HEADER RNA 25-JAN-18 6C8L TITLE RNA-ACTIVATED 2-AIPG MONOMER COMPLEX, 1H SOAKING COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG) COMPND 3 P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3'); COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS RNA, ACTIVATED MONOMER EXPDTA X-RAY DIFFRACTION AUTHOR W.ZHANG,J.W.SZOSTAK REVDAT 5 01-MAY-24 6C8L 1 COMPND HETNAM FORMUL REVDAT 4 04-OCT-23 6C8L 1 LINK REVDAT 3 20-NOV-19 6C8L 1 REMARK REVDAT 2 31-OCT-18 6C8L 1 JRNL REVDAT 1 30-MAY-18 6C8L 0 JRNL AUTH W.ZHANG,T.WALTON,L.LI,J.W.SZOSTAK JRNL TITL CRYSTALLOGRAPHIC OBSERVATION OF NONENZYMATIC RNA PRIMER JRNL TITL 2 EXTENSION. JRNL REF ELIFE V. 7 2018 JRNL REFN ESSN 2050-084X JRNL PMID 29851379 JRNL DOI 10.7554/ELIFE.36422 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 88.4 REMARK 3 NUMBER OF REFLECTIONS : 4687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 243 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 178 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 45.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.1790 REMARK 3 BIN FREE R VALUE SET COUNT : 6 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 598 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.255 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.236 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.389 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 780 ; 0.025 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): 348 ; 0.042 ; 0.024 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1210 ; 2.984 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): 834 ; 4.180 ; 3.273 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 138 ; 0.189 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 408 ; 0.016 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 152 ; 0.002 ; 0.022 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 776 ; 6.883 ; 6.661 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 777 ; 6.879 ; 6.659 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1210 ; 8.848 ; 9.983 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1192 ;10.560 ;67.580 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1184 ;10.530 ;67.608 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6C8L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000232282. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 99 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5038 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 47.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.42600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5DHC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% V/V (+/-)-2-METHYL-2,4 REMARK 280 -PENTANEDIOL, 0.040 M SODIUM CACODYLATE TRIHYDRATE PH 7.0, 0.012 REMARK 280 M SPERMINE TETRAHYDROCHLORIDE, 0.080 M SODIUM CHLORIDE, 0.020 M REMARK 280 MAGNESIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 102 LIES ON A SPECIAL POSITION. REMARK 375 MG MG B 102 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 202 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 203 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 207 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LCC A 2 O3' LCC A 3 P 0.089 REMARK 500 LCC B 1 O3' LCC B 2 P 0.082 REMARK 500 LCG B 4 O3' A B 5 P -0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LCC A 1 C3' - O3' - P ANGL. DEV. = 13.8 DEGREES REMARK 500 LCC A 2 O3' - P - O5' ANGL. DEV. = -18.4 DEGREES REMARK 500 LCC A 2 C3' - O3' - P ANGL. DEV. = 17.5 DEGREES REMARK 500 LCC A 3 O3' - P - O5' ANGL. DEV. = -18.3 DEGREES REMARK 500 LCC A 3 C3' - O3' - P ANGL. DEV. = -22.8 DEGREES REMARK 500 LCG A 4 O3' - P - O5' ANGL. DEV. = 13.7 DEGREES REMARK 500 LCG A 4 O3' - P - OP2 ANGL. DEV. = 10.6 DEGREES REMARK 500 LCG A 4 C3' - O3' - P ANGL. DEV. = 12.9 DEGREES REMARK 500 A A 5 O3' - P - OP1 ANGL. DEV. = 9.8 DEGREES REMARK 500 LCC B 1 C3' - O3' - P ANGL. DEV. = 13.9 DEGREES REMARK 500 LCC B 3 C3' - O3' - P ANGL. DEV. = 21.1 DEGREES REMARK 500 LCG B 4 O3' - P - O5' ANGL. DEV. = -16.6 DEGREES REMARK 500 LCG B 4 O3' - P - OP1 ANGL. DEV. = 15.6 DEGREES REMARK 500 LCG B 4 C3' - O3' - P ANGL. DEV. = 20.5 DEGREES REMARK 500 A B 5 O3' - P - O5' ANGL. DEV. = -23.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 EQ1 A 101 O3D REMARK 620 2 EQ1 A 101 O3D 0.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 EQ1 B 101 O2D REMARK 620 2 EQ1 B 101 O2D 114.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 201 O REMARK 620 2 HOH A 204 O 135.7 REMARK 620 3 HOH B 202 O 100.5 101.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 203 O REMARK 620 2 HOH A 206 O 102.4 REMARK 620 3 HOH B 201 O 164.9 86.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EQ1 A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EQ1 B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 103 DBREF 6C8L A 1 14 PDB 6C8L 6C8L 1 14 DBREF 6C8L B 1 14 PDB 6C8L 6C8L 1 14 SEQRES 1 A 14 LCC LCC LCC LCG A C U U A A G U C SEQRES 2 A 14 G SEQRES 1 B 14 LCC LCC LCC LCG A C U U A A G U C SEQRES 2 B 14 G HET LCC A 1 19 HET LCC A 2 22 HET LCC A 3 22 HET LCG A 4 24 HET LCC B 1 19 HET LCC B 2 22 HET LCC B 3 22 HET LCG B 4 24 HET EQ1 A 101 52 HET MG A 102 1 HET MG A 103 1 HET EQ1 B 101 52 HET MG B 102 1 HET MG B 103 1 HETNAM LCC [(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5- HETNAM 2 LCC DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCC PHOSPHATE HETNAM LCG [(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5- HETNAM 2 LCG DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCG PHOSPHATE HETNAM EQ1 2-AMINO-1-[(R)-{[(2R,3S,4R,5R)-5-(2-AMINO-6-OXO-1,6- HETNAM 2 EQ1 DIHYDRO-9H-PURIN-9-YL)-3,4-DIHYDROXYOXOLAN-2- HETNAM 3 EQ1 YL]METHOXY}(HYDROXY)PHOSPHORYL]-3-[(S)-{[(2R,3S,4R, HETNAM 4 EQ1 5R)-5-(2-AMINO-6-OXO-1,6-DIHYDRO-9H-PURIN-9-YL)-3,4- HETNAM 5 EQ1 DIHYDROXYOXOLAN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]-1H- HETNAM 6 EQ1 IMIDAZOL-3-IUM HETNAM MG MAGNESIUM ION FORMUL 1 LCC 6(C11 H16 N3 O8 P) FORMUL 1 LCG 2(C11 H14 N5 O8 P) FORMUL 3 EQ1 2(C23 H30 N13 O14 P2 1+) FORMUL 4 MG 4(MG 2+) FORMUL 9 HOH *14(H2 O) LINK O3' LCC A 1 P LCC A 2 1555 1555 1.68 LINK O3' LCC A 2 P LCC A 3 1555 1555 1.70 LINK O3' LCC A 3 P LCG A 4 1555 1555 1.63 LINK O3' LCG A 4 P A A 5 1555 1555 1.64 LINK O3' LCC B 1 P LCC B 2 1555 1555 1.69 LINK O3' LCC B 2 P LCC B 3 1555 1555 1.60 LINK O3' LCC B 3 P LCG B 4 1555 1555 1.59 LINK O3' LCG B 4 P A B 5 1555 1555 1.51 LINK O3D EQ1 A 101 MG MG B 102 1555 1555 2.63 LINK O3D EQ1 A 101 MG MG B 102 1555 2655 2.62 LINK MG MG A 102 O2D EQ1 B 101 1555 1555 2.05 LINK MG MG A 102 O2D EQ1 B 101 1555 3665 2.01 LINK MG MG A 103 O HOH A 201 1555 1555 1.85 LINK MG MG A 103 O HOH A 204 1555 1555 1.82 LINK MG MG A 103 O HOH B 202 1555 1555 1.86 LINK O HOH A 203 MG MG B 103 3665 1555 1.87 LINK O HOH A 206 MG MG B 103 3665 1555 1.91 LINK MG MG B 103 O HOH B 201 1555 1555 2.11 SITE 1 AC1 5 LCC A 1 LCC A 2 LCC A 3 G B 14 SITE 2 AC1 5 MG B 102 SITE 1 AC2 1 EQ1 B 101 SITE 1 AC3 4 A A 5 HOH A 201 HOH A 204 HOH B 202 SITE 1 AC4 5 G A 14 MG A 102 LCC B 1 LCC B 2 SITE 2 AC4 5 LCC B 3 SITE 1 AC5 1 EQ1 A 101 SITE 1 AC6 3 HOH A 203 HOH A 206 HOH B 201 CRYST1 47.948 47.948 82.388 90.00 90.00 120.00 P 3 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020856 0.012041 0.000000 0.00000 SCALE2 0.000000 0.024082 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012138 0.00000 HETATM 1 O5' LCC A 1 31.518 -5.109 79.456 1.00 52.65 O HETATM 2 C5' LCC A 1 30.222 -5.479 78.930 1.00 59.13 C HETATM 3 C4' LCC A 1 29.208 -4.386 79.266 1.00 60.24 C HETATM 4 O4' LCC A 1 29.347 -3.789 80.525 1.00 62.07 O HETATM 5 C1' LCC A 1 28.801 -2.430 80.412 1.00 65.49 C HETATM 6 N1 LCC A 1 29.883 -1.407 80.601 1.00 64.63 N HETATM 7 C6 LCC A 1 31.239 -1.787 80.560 1.00 58.51 C HETATM 8 C5 LCC A 1 32.218 -0.834 80.737 1.00 63.77 C HETATM 9 C5M LCC A 1 33.552 -1.267 80.727 1.00 68.62 C HETATM 10 C4 LCC A 1 31.778 0.503 80.946 1.00 67.65 C HETATM 11 N4 LCC A 1 32.669 1.479 81.097 1.00 61.31 N HETATM 12 N3 LCC A 1 30.463 0.835 80.934 1.00 61.18 N HETATM 13 C2 LCC A 1 29.547 -0.114 80.772 1.00 59.16 C HETATM 14 O2 LCC A 1 28.370 0.217 80.768 1.00 72.36 O HETATM 15 C3' LCC A 1 29.332 -3.179 78.368 1.00 69.95 C HETATM 16 C2' LCC A 1 28.260 -2.395 79.000 1.00 64.53 C HETATM 17 O2' LCC A 1 27.143 -3.357 78.735 1.00 69.73 O HETATM 18 O3' LCC A 1 28.847 -3.514 77.139 1.00 52.67 O HETATM 19 C6' LCC A 1 27.660 -4.781 79.020 1.00 61.75 C HETATM 20 O5' LCC A 2 27.757 -1.714 76.187 1.00 53.21 O HETATM 21 C5' LCC A 2 26.491 -1.472 75.573 1.00 53.31 C HETATM 22 C4' LCC A 2 25.983 -0.175 76.149 1.00 55.91 C HETATM 23 O4' LCC A 2 26.275 0.186 77.441 1.00 52.61 O HETATM 24 C1' LCC A 2 26.220 1.675 77.423 1.00 49.72 C HETATM 25 N1 LCC A 2 27.480 2.347 77.657 1.00 54.26 N HETATM 26 C6 LCC A 2 28.710 1.607 77.576 1.00 56.98 C HETATM 27 C5 LCC A 2 29.903 2.293 77.805 1.00 55.12 C HETATM 28 C5M LCC A 2 31.076 1.563 77.750 1.00 54.09 C HETATM 29 C4 LCC A 2 29.824 3.674 78.162 1.00 49.40 C HETATM 30 N4 LCC A 2 30.927 4.401 78.342 1.00 49.91 N HETATM 31 N3 LCC A 2 28.677 4.338 78.131 1.00 47.37 N HETATM 32 C2 LCC A 2 27.516 3.702 77.930 1.00 55.84 C HETATM 33 O2 LCC A 2 26.515 4.419 78.012 1.00 60.35 O HETATM 34 C3' LCC A 2 26.463 1.029 75.394 1.00 49.83 C HETATM 35 C2' LCC A 2 25.735 1.968 76.091 1.00 49.80 C HETATM 36 O2' LCC A 2 24.395 1.411 75.974 1.00 59.92 O HETATM 37 O3' LCC A 2 25.904 0.991 74.197 1.00 48.94 O HETATM 38 C6' LCC A 2 24.483 -0.111 76.040 1.00 58.01 C HETATM 39 P LCC A 2 28.960 -2.807 75.621 1.00 62.75 P HETATM 40 O1P LCC A 2 30.203 -2.006 75.377 1.00 65.73 O HETATM 41 O2P LCC A 2 28.457 -3.460 74.378 1.00 78.84 O HETATM 42 O5' LCC A 3 25.802 2.886 73.030 1.00 49.96 O HETATM 43 C5' LCC A 3 24.555 3.452 72.503 1.00 50.78 C HETATM 44 C4' LCC A 3 24.350 4.828 73.230 1.00 57.39 C HETATM 45 O4' LCC A 3 24.926 4.985 74.510 1.00 48.58 O HETATM 46 C1' LCC A 3 25.248 6.328 74.606 1.00 55.50 C HETATM 47 N1 LCC A 3 26.693 6.480 74.796 1.00 51.35 N HETATM 48 C6 LCC A 3 27.582 5.421 74.614 1.00 49.81 C HETATM 49 C5 LCC A 3 28.969 5.672 74.787 1.00 53.20 C HETATM 50 C5M LCC A 3 29.885 4.652 74.612 1.00 51.38 C HETATM 51 C4 LCC A 3 29.407 6.947 75.215 1.00 56.14 C HETATM 52 N4 LCC A 3 30.686 7.148 75.495 1.00 48.21 N HETATM 53 N3 LCC A 3 28.538 7.950 75.394 1.00 62.40 N HETATM 54 C2 LCC A 3 27.202 7.716 75.187 1.00 66.95 C HETATM 55 O2 LCC A 3 26.492 8.712 75.379 1.00 53.11 O HETATM 56 C3' LCC A 3 24.978 5.853 72.490 1.00 56.13 C HETATM 57 C2' LCC A 3 24.694 6.924 73.338 1.00 50.38 C HETATM 58 O2' LCC A 3 23.222 6.852 73.384 1.00 53.21 O HETATM 59 O3' LCC A 3 24.278 6.008 71.163 1.00 52.61 O HETATM 60 C6' LCC A 3 22.871 5.365 73.282 1.00 58.68 C HETATM 61 P LCC A 3 26.313 1.451 72.617 1.00 48.91 P HETATM 62 O1P LCC A 3 27.726 1.766 72.332 1.00 58.59 O HETATM 63 O2P LCC A 3 25.639 0.786 71.484 1.00 49.95 O HETATM 64 P LCG A 4 25.615 6.252 70.263 1.00 47.43 P HETATM 65 OP1 LCG A 4 25.163 5.937 68.890 1.00 49.56 O HETATM 66 O5' LCG A 4 26.069 7.871 69.933 1.00 50.65 O HETATM 67 C5' LCG A 4 24.929 8.786 70.106 1.00 53.60 C HETATM 68 C3' LCG A 4 26.663 10.507 69.615 1.00 53.80 C HETATM 69 C6' LCG A 4 24.637 11.449 70.348 1.00 76.54 C HETATM 70 N9 LCG A 4 28.185 10.469 72.074 1.00 51.18 N HETATM 71 C8 LCG A 4 28.379 9.144 72.135 1.00 49.08 C HETATM 72 C4 LCG A 4 29.310 11.078 72.295 1.00 50.51 C HETATM 73 N7 LCG A 4 29.640 8.936 72.529 1.00 53.03 N HETATM 74 C5 LCG A 4 30.207 10.117 72.625 1.00 57.97 C HETATM 75 C6 LCG A 4 31.445 10.427 73.011 1.00 59.32 C HETATM 76 C2' LCG A 4 26.925 11.822 70.335 1.00 53.93 C HETATM 77 O6 LCG A 4 32.266 9.551 73.260 1.00 70.94 O HETATM 78 C4' LCG A 4 25.544 10.139 70.498 1.00 55.95 C HETATM 79 C1' LCG A 4 27.011 11.256 71.742 1.00 54.60 C HETATM 80 C2 LCG A 4 30.850 12.751 72.755 1.00 58.73 C HETATM 81 N1 LCG A 4 31.811 11.759 73.073 1.00 62.03 N HETATM 82 O4' LCG A 4 26.120 10.166 71.802 1.00 50.57 O HETATM 83 OP2 LCG A 4 26.933 5.679 70.668 1.00 48.24 O HETATM 84 N2 LCG A 4 31.218 14.019 72.830 1.00 66.05 N HETATM 85 N3 LCG A 4 29.593 12.396 72.387 1.00 55.27 N HETATM 86 O2' LCG A 4 25.718 12.574 70.144 1.00 56.28 O HETATM 87 O3' LCG A 4 26.083 10.628 68.359 1.00 54.52 O