HEADER HYDROLASE 29-JAN-18 6CA4 TITLE CRYSTAL STRUCTURE OF HUMANIZED D. RERIO TDP2 BY 14 MUTATIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSYL-DNA PHOSPHODIESTERASE 2; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: TYR-DNA PHOSPHODIESTERASE 2,5'-TYROSYL-DNA COMPND 5 PHOSPHODIESTERASE,5'-TYR-DNA PHOSPHODIESTERASE,TRAF AND TNF RECEPTOR- COMPND 6 ASSOCIATED PROTEIN HOMOLOG; COMPND 7 EC: 3.1.4.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: TDP2, TTRAP, TTRAPL, SI:CH211-81E5.5, SI:DKEY-218N20.5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TDP2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.SHI,H.AIHRARA REVDAT 4 04-OCT-23 6CA4 1 LINK REVDAT 3 01-JAN-20 6CA4 1 REMARK REVDAT 2 20-FEB-19 6CA4 1 REMARK REVDAT 1 02-MAY-18 6CA4 0 JRNL AUTH C.J.A.RIBEIRO,J.KANKANALA,K.SHI,K.KURAHASHI,E.KISELEV, JRNL AUTH 2 A.RAVJI,Y.POMMIER,H.AIHARA,Z.WANG JRNL TITL NEW FLUORESCENCE-BASED HIGH-THROUGHPUT SCREENING ASSAY FOR JRNL TITL 2 SMALL MOLECULE INHIBITORS OF TYROSYL-DNA PHOSPHODIESTERASE 2 JRNL TITL 3 (TDP2). JRNL REF EUR J PHARM SCI V. 118 67 2018 JRNL REFN ISSN 1879-0720 JRNL PMID 29574079 JRNL DOI 10.1016/J.EJPS.2018.03.021 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 94686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4748 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 79.4865 - 5.0434 1.00 3294 175 0.2043 0.2209 REMARK 3 2 5.0434 - 4.0031 1.00 3163 151 0.1443 0.1657 REMARK 3 3 4.0031 - 3.4971 1.00 3115 176 0.1533 0.1800 REMARK 3 4 3.4971 - 3.1773 1.00 3069 168 0.1622 0.1965 REMARK 3 5 3.1773 - 2.9496 1.00 3080 171 0.1707 0.2074 REMARK 3 6 2.9496 - 2.7757 1.00 3052 172 0.1668 0.1691 REMARK 3 7 2.7757 - 2.6367 1.00 3054 170 0.1616 0.1757 REMARK 3 8 2.6367 - 2.5219 1.00 3020 188 0.1633 0.1916 REMARK 3 9 2.5219 - 2.4248 1.00 3080 161 0.1682 0.1967 REMARK 3 10 2.4248 - 2.3411 1.00 3038 171 0.1670 0.1958 REMARK 3 11 2.3411 - 2.2679 1.00 3027 148 0.1677 0.2283 REMARK 3 12 2.2679 - 2.2031 1.00 3052 148 0.1911 0.2263 REMARK 3 13 2.2031 - 2.1451 1.00 3057 145 0.1669 0.2047 REMARK 3 14 2.1451 - 2.0927 1.00 3021 173 0.1710 0.1911 REMARK 3 15 2.0927 - 2.0451 1.00 3058 132 0.1760 0.2167 REMARK 3 16 2.0451 - 2.0016 1.00 3024 150 0.1795 0.1806 REMARK 3 17 2.0016 - 1.9616 1.00 3021 154 0.1778 0.2302 REMARK 3 18 1.9616 - 1.9246 1.00 3026 159 0.1936 0.2336 REMARK 3 19 1.9246 - 1.8902 1.00 3004 184 0.2114 0.2329 REMARK 3 20 1.8902 - 1.8581 1.00 3042 139 0.2289 0.2592 REMARK 3 21 1.8581 - 1.8282 0.99 3026 137 0.2812 0.3252 REMARK 3 22 1.8282 - 1.8000 1.00 2992 159 0.2828 0.2923 REMARK 3 23 1.8000 - 1.7736 1.00 3019 143 0.2738 0.3083 REMARK 3 24 1.7736 - 1.7486 1.00 3003 182 0.2862 0.3069 REMARK 3 25 1.7486 - 1.7249 1.00 2998 148 0.2951 0.3358 REMARK 3 26 1.7249 - 1.7025 1.00 3026 157 0.3059 0.3215 REMARK 3 27 1.7025 - 1.6813 0.98 2926 164 0.3328 0.3706 REMARK 3 28 1.6813 - 1.6610 0.96 2896 158 0.3629 0.4070 REMARK 3 29 1.6610 - 1.6417 0.91 2710 152 0.3787 0.4016 REMARK 3 30 1.6417 - 1.6232 0.68 2045 113 0.3881 0.3991 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5917 REMARK 3 ANGLE : 0.723 7985 REMARK 3 CHIRALITY : 0.050 890 REMARK 3 PLANARITY : 0.004 1019 REMARK 3 DIHEDRAL : 15.077 3547 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 21 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7840 11.1874 12.2373 REMARK 3 T TENSOR REMARK 3 T11: 0.2088 T22: 0.2031 REMARK 3 T33: 0.2355 T12: 0.0320 REMARK 3 T13: -0.0438 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 0.2547 L22: 0.5145 REMARK 3 L33: 0.3854 L12: 0.0835 REMARK 3 L13: -0.5335 L23: 0.0778 REMARK 3 S TENSOR REMARK 3 S11: 0.2078 S12: 0.1623 S13: -0.2291 REMARK 3 S21: 0.0721 S22: -0.0179 S23: -0.0312 REMARK 3 S31: 0.3320 S32: 0.1118 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.9466 4.8806 8.3186 REMARK 3 T TENSOR REMARK 3 T11: 0.3089 T22: 0.1951 REMARK 3 T33: 0.2773 T12: 0.0637 REMARK 3 T13: -0.0716 T23: -0.0507 REMARK 3 L TENSOR REMARK 3 L11: 0.0039 L22: 0.0423 REMARK 3 L33: 0.0692 L12: 0.0348 REMARK 3 L13: -0.0118 L23: -0.0214 REMARK 3 S TENSOR REMARK 3 S11: 0.1236 S12: 0.0624 S13: -0.1636 REMARK 3 S21: 0.1606 S22: -0.0173 S23: -0.0481 REMARK 3 S31: 0.6014 S32: 0.1764 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 153 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1025 13.9386 7.1348 REMARK 3 T TENSOR REMARK 3 T11: 0.1601 T22: 0.2462 REMARK 3 T33: 0.2440 T12: 0.0385 REMARK 3 T13: -0.0047 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 0.0709 L22: 0.2876 REMARK 3 L33: 0.2075 L12: 0.1101 REMARK 3 L13: 0.1206 L23: -0.1599 REMARK 3 S TENSOR REMARK 3 S11: 0.0392 S12: 0.0951 S13: -0.0694 REMARK 3 S21: -0.0308 S22: -0.0179 S23: -0.1401 REMARK 3 S31: 0.2794 S32: 0.2248 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 174 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2411 24.1880 8.7319 REMARK 3 T TENSOR REMARK 3 T11: 0.1243 T22: 0.1757 REMARK 3 T33: 0.1958 T12: -0.0070 REMARK 3 T13: -0.0043 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.9151 L22: 0.8801 REMARK 3 L33: 0.7144 L12: 0.0491 REMARK 3 L13: -0.2925 L23: 0.1526 REMARK 3 S TENSOR REMARK 3 S11: -0.0493 S12: 0.0655 S13: 0.0581 REMARK 3 S21: -0.0470 S22: 0.0105 S23: 0.0083 REMARK 3 S31: -0.0544 S32: 0.1004 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4106 28.8065 24.3291 REMARK 3 T TENSOR REMARK 3 T11: 0.1750 T22: 0.3222 REMARK 3 T33: 0.2213 T12: 0.0198 REMARK 3 T13: -0.0141 T23: -0.0426 REMARK 3 L TENSOR REMARK 3 L11: 0.3627 L22: 0.2270 REMARK 3 L33: 0.1962 L12: 0.1715 REMARK 3 L13: -0.2177 L23: 0.2447 REMARK 3 S TENSOR REMARK 3 S11: -0.2941 S12: -0.5348 S13: 0.1357 REMARK 3 S21: 0.2620 S22: 0.1278 S23: 0.0769 REMARK 3 S31: -0.3488 S32: -0.4971 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 260 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7610 24.6807 19.8732 REMARK 3 T TENSOR REMARK 3 T11: 0.1431 T22: 0.2938 REMARK 3 T33: 0.2152 T12: -0.0070 REMARK 3 T13: 0.0113 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 0.5692 L22: 0.3858 REMARK 3 L33: 0.0951 L12: 0.2275 REMARK 3 L13: -0.1410 L23: 0.2468 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: -0.2509 S13: 0.0324 REMARK 3 S21: 0.1171 S22: -0.0839 S23: 0.0880 REMARK 3 S31: -0.0105 S32: -0.1685 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 289 THROUGH 324 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0268 10.1032 23.3774 REMARK 3 T TENSOR REMARK 3 T11: 0.2862 T22: 0.2969 REMARK 3 T33: 0.2880 T12: -0.0474 REMARK 3 T13: 0.0043 T23: 0.0943 REMARK 3 L TENSOR REMARK 3 L11: 0.1216 L22: 0.1596 REMARK 3 L33: 0.2066 L12: 0.0650 REMARK 3 L13: -0.1937 L23: 0.0312 REMARK 3 S TENSOR REMARK 3 S11: -0.0303 S12: -0.4944 S13: -0.1701 REMARK 3 S21: 0.3916 S22: -0.0683 S23: 0.0390 REMARK 3 S31: 0.3822 S32: -0.2969 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 325 THROUGH 346 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8431 18.2789 11.5737 REMARK 3 T TENSOR REMARK 3 T11: 0.1512 T22: 0.2387 REMARK 3 T33: 0.2386 T12: -0.0254 REMARK 3 T13: -0.0132 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.3709 L22: 0.1376 REMARK 3 L33: 0.2208 L12: 0.1516 REMARK 3 L13: -0.1578 L23: 0.1485 REMARK 3 S TENSOR REMARK 3 S11: 0.0206 S12: -0.1118 S13: -0.0960 REMARK 3 S21: 0.0929 S22: -0.0217 S23: 0.1332 REMARK 3 S31: 0.0900 S32: -0.2739 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 347 THROUGH 369 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0078 5.5535 14.3724 REMARK 3 T TENSOR REMARK 3 T11: 0.2854 T22: 0.1636 REMARK 3 T33: 0.3129 T12: -0.0012 REMARK 3 T13: -0.0605 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 0.2487 L22: 0.2079 REMARK 3 L33: 0.2132 L12: 0.1436 REMARK 3 L13: -0.1740 L23: 0.2582 REMARK 3 S TENSOR REMARK 3 S11: 0.1474 S12: -0.1367 S13: -0.3213 REMARK 3 S21: -0.0307 S22: -0.0342 S23: 0.0557 REMARK 3 S31: 0.3755 S32: -0.1534 S33: -0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 120 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4403 -10.2751 -11.7039 REMARK 3 T TENSOR REMARK 3 T11: 0.2179 T22: 0.2519 REMARK 3 T33: 0.2333 T12: 0.0283 REMARK 3 T13: 0.0235 T23: -0.0344 REMARK 3 L TENSOR REMARK 3 L11: 0.4327 L22: 0.4475 REMARK 3 L33: 0.5590 L12: -0.4776 REMARK 3 L13: -0.4679 L23: -0.4130 REMARK 3 S TENSOR REMARK 3 S11: 0.0204 S12: -0.0653 S13: -0.0277 REMARK 3 S21: -0.1040 S22: 0.0189 S23: -0.1289 REMARK 3 S31: 0.1986 S32: 0.3445 S33: -0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 153 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1898 -4.3483 -14.8548 REMARK 3 T TENSOR REMARK 3 T11: 0.2658 T22: 0.2053 REMARK 3 T33: 0.2127 T12: -0.0135 REMARK 3 T13: 0.0163 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 0.1951 L22: 0.2035 REMARK 3 L33: 0.2068 L12: -0.2058 REMARK 3 L13: 0.0583 L23: -0.1248 REMARK 3 S TENSOR REMARK 3 S11: -0.0227 S12: 0.0320 S13: 0.0503 REMARK 3 S21: -0.1670 S22: -0.0063 S23: -0.0923 REMARK 3 S31: -0.0110 S32: 0.2056 S33: 0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 174 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6809 -4.1791 -13.5047 REMARK 3 T TENSOR REMARK 3 T11: 0.2608 T22: 0.2024 REMARK 3 T33: 0.1897 T12: 0.0165 REMARK 3 T13: -0.0049 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.9403 L22: 0.9747 REMARK 3 L33: 0.6265 L12: -0.2053 REMARK 3 L13: -0.5264 L23: -0.3500 REMARK 3 S TENSOR REMARK 3 S11: 0.0430 S12: 0.1415 S13: -0.0055 REMARK 3 S21: -0.1418 S22: -0.0262 S23: 0.0823 REMARK 3 S31: -0.1743 S32: -0.1713 S33: 0.0000 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 240 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7810 -6.7662 1.9269 REMARK 3 T TENSOR REMARK 3 T11: 0.2874 T22: 0.2787 REMARK 3 T33: 0.2321 T12: 0.0077 REMARK 3 T13: 0.0433 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.2100 L22: 0.4319 REMARK 3 L33: 0.1922 L12: -0.0324 REMARK 3 L13: -0.3374 L23: -0.0044 REMARK 3 S TENSOR REMARK 3 S11: 0.0663 S12: -0.2780 S13: -0.0993 REMARK 3 S21: 0.3416 S22: -0.0913 S23: 0.1683 REMARK 3 S31: 0.2644 S32: -0.3350 S33: 0.0000 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 260 THROUGH 346 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7193 -18.3989 -3.6598 REMARK 3 T TENSOR REMARK 3 T11: 0.3206 T22: 0.1501 REMARK 3 T33: 0.2403 T12: -0.0087 REMARK 3 T13: 0.0277 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 0.7542 L22: 1.5671 REMARK 3 L33: 0.9893 L12: -0.2990 REMARK 3 L13: -1.3597 L23: 0.2438 REMARK 3 S TENSOR REMARK 3 S11: -0.1473 S12: -0.0990 S13: -0.2195 REMARK 3 S21: 0.1283 S22: -0.0143 S23: 0.0454 REMARK 3 S31: 0.3667 S32: 0.0108 S33: -0.0000 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 347 THROUGH 369 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3752 -15.7556 -8.0016 REMARK 3 T TENSOR REMARK 3 T11: 0.2404 T22: 0.2548 REMARK 3 T33: 0.2873 T12: 0.0691 REMARK 3 T13: 0.0080 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.1878 L22: 0.3695 REMARK 3 L33: 0.3535 L12: -0.2137 REMARK 3 L13: -0.2993 L23: -0.0496 REMARK 3 S TENSOR REMARK 3 S11: 0.0972 S12: -0.0870 S13: -0.1861 REMARK 3 S21: 0.1327 S22: -0.0287 S23: -0.1997 REMARK 3 S31: 0.3383 S32: 0.1575 S33: 0.0000 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 120 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6738 -30.6682 34.7695 REMARK 3 T TENSOR REMARK 3 T11: 0.2732 T22: 0.2080 REMARK 3 T33: 0.2408 T12: 0.0583 REMARK 3 T13: -0.0807 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 0.8523 L22: 0.1885 REMARK 3 L33: 0.4545 L12: -0.4601 REMARK 3 L13: -0.1572 L23: -0.4827 REMARK 3 S TENSOR REMARK 3 S11: 0.1056 S12: 0.0908 S13: -0.1959 REMARK 3 S21: -0.0382 S22: 0.0936 S23: 0.0152 REMARK 3 S31: 0.2743 S32: 0.2638 S33: 0.0000 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 153 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5283 -23.2042 36.3694 REMARK 3 T TENSOR REMARK 3 T11: 0.1938 T22: 0.2104 REMARK 3 T33: 0.1875 T12: -0.0462 REMARK 3 T13: -0.0217 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 1.3163 L22: 0.8828 REMARK 3 L33: 0.9768 L12: -0.1178 REMARK 3 L13: 0.5284 L23: -0.4052 REMARK 3 S TENSOR REMARK 3 S11: 0.0706 S12: -0.2163 S13: -0.0403 REMARK 3 S21: -0.0129 S22: 0.0067 S23: 0.0622 REMARK 3 S31: 0.2177 S32: -0.2108 S33: 0.0000 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 240 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4801 -13.8096 19.9522 REMARK 3 T TENSOR REMARK 3 T11: 0.3141 T22: 0.2169 REMARK 3 T33: 0.2153 T12: -0.0302 REMARK 3 T13: -0.0355 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 0.3853 L22: 0.1813 REMARK 3 L33: 0.1907 L12: 0.1807 REMARK 3 L13: 0.2288 L23: -0.2394 REMARK 3 S TENSOR REMARK 3 S11: -0.2079 S12: 0.0766 S13: 0.1189 REMARK 3 S21: -0.2094 S22: 0.0278 S23: 0.1437 REMARK 3 S31: -0.1141 S32: 0.1921 S33: 0.0000 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 259 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3176 -10.9894 26.2547 REMARK 3 T TENSOR REMARK 3 T11: 0.2732 T22: 0.2347 REMARK 3 T33: 0.2199 T12: -0.0548 REMARK 3 T13: -0.0087 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.7586 L22: 0.7348 REMARK 3 L33: 0.6493 L12: 0.5156 REMARK 3 L13: 1.1393 L23: -0.2915 REMARK 3 S TENSOR REMARK 3 S11: -0.1251 S12: 0.2513 S13: 0.0625 REMARK 3 S21: -0.2595 S22: 0.0545 S23: -0.0734 REMARK 3 S31: -0.1396 S32: 0.2847 S33: -0.0000 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 331 THROUGH 346 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6950 -9.0931 36.7638 REMARK 3 T TENSOR REMARK 3 T11: 0.2455 T22: 0.2585 REMARK 3 T33: 0.2771 T12: -0.0272 REMARK 3 T13: -0.0352 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 0.0490 L22: 0.0674 REMARK 3 L33: 0.2456 L12: -0.0597 REMARK 3 L13: 0.1280 L23: -0.1591 REMARK 3 S TENSOR REMARK 3 S11: -0.1694 S12: -0.1283 S13: 0.1308 REMARK 3 S21: -0.0538 S22: 0.1658 S23: -0.2263 REMARK 3 S31: -0.1262 S32: 0.1506 S33: 0.0000 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 347 THROUGH 369 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6593 -27.9962 31.3110 REMARK 3 T TENSOR REMARK 3 T11: 0.2823 T22: 0.3018 REMARK 3 T33: 0.2958 T12: 0.0824 REMARK 3 T13: -0.0452 T23: -0.0669 REMARK 3 L TENSOR REMARK 3 L11: 0.5505 L22: 0.0746 REMARK 3 L33: 0.2524 L12: 0.0211 REMARK 3 L13: 0.1330 L23: -0.1273 REMARK 3 S TENSOR REMARK 3 S11: 0.2154 S12: 0.1211 S13: -0.0284 REMARK 3 S21: -0.2823 S22: -0.0485 S23: -0.4330 REMARK 3 S31: 0.1360 S32: 0.0297 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CA4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000231431. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95228 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 134.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 1.86400 REMARK 200 R SYM FOR SHELL (I) : 1.86400 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4FPV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, SODIUM MALONATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.51700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.37000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.13000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.37000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.51700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.13000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 312 REMARK 465 ASN A 313 REMARK 465 LEU A 314 REMARK 465 GLY A 315 REMARK 465 ILE A 316 REMARK 465 THR A 317 REMARK 465 ALA A 318 REMARK 465 SER B 312 REMARK 465 ASN B 313 REMARK 465 LEU B 314 REMARK 465 GLY B 315 REMARK 465 ILE B 316 REMARK 465 THR B 317 REMARK 465 GLU C 300 REMARK 465 HIS C 301 REMARK 465 CYS C 302 REMARK 465 ARG C 303 REMARK 465 TYR C 304 REMARK 465 THR C 305 REMARK 465 TRP C 306 REMARK 465 ASP C 307 REMARK 465 THR C 308 REMARK 465 GLN C 309 REMARK 465 ALA C 310 REMARK 465 ASN C 311 REMARK 465 SER C 312 REMARK 465 ASN C 313 REMARK 465 LEU C 314 REMARK 465 GLY C 315 REMARK 465 ILE C 316 REMARK 465 THR C 317 REMARK 465 ALA C 318 REMARK 465 ALA C 319 REMARK 465 CYS C 320 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 341 HO1 EDO A 402 1.51 REMARK 500 HH TYR A 230 O HOH A 502 1.53 REMARK 500 OE2 GLU A 202 HO2 EDO A 403 1.55 REMARK 500 OD1 ASP C 140 HH11 ARG C 143 1.58 REMARK 500 OE2 GLU C 349 O HOH C 501 1.86 REMARK 500 O HOH B 599 O HOH B 614 1.89 REMARK 500 O HOH B 505 O HOH B 613 1.92 REMARK 500 O HOH C 514 O HOH C 628 1.92 REMARK 500 O HOH A 594 O HOH A 644 1.94 REMARK 500 O HOH C 646 O HOH C 649 1.95 REMARK 500 O HOH B 607 O HOH B 622 1.96 REMARK 500 O HOH C 604 O HOH C 623 1.96 REMARK 500 O HOH C 646 O HOH C 650 1.97 REMARK 500 O HOH A 643 O HOH A 651 1.98 REMARK 500 OD1 ASP C 341 O HOH C 502 1.99 REMARK 500 O HOH B 607 O HOH B 611 1.99 REMARK 500 O HOH B 611 O HOH B 614 2.02 REMARK 500 O HOH C 512 O HOH C 579 2.08 REMARK 500 OD2 ASP A 341 O1 EDO A 402 2.08 REMARK 500 O HOH C 620 O HOH C 632 2.09 REMARK 500 O HOH A 575 O HOH A 633 2.10 REMARK 500 O HOH A 502 O HOH A 538 2.12 REMARK 500 OD1 ASP B 341 O HOH B 501 2.13 REMARK 500 O HOH C 586 O HOH C 628 2.14 REMARK 500 OD2 ASP B 276 O HOH B 502 2.15 REMARK 500 O GLY A 283 O HOH A 501 2.15 REMARK 500 O HOH B 529 O HOH B 628 2.17 REMARK 500 O HOH C 605 O HOH C 613 2.18 REMARK 500 O HOH B 504 O HOH B 579 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 591 O HOH C 634 3555 1.89 REMARK 500 O HOH A 583 O HOH C 624 3655 1.96 REMARK 500 O HOH B 624 O HOH C 559 4545 1.96 REMARK 500 O HOH A 515 O HOH C 624 3655 2.12 REMARK 500 O HOH A 622 O HOH C 627 3655 2.13 REMARK 500 O HOH B 633 O HOH C 645 2554 2.14 REMARK 500 O HOH A 610 O HOH A 638 4455 2.18 REMARK 500 OG SER C 203 O HOH A 501 3545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 174 61.27 -108.71 REMARK 500 THR A 239 147.02 81.40 REMARK 500 ASP A 276 -129.64 51.18 REMARK 500 ARG A 323 75.70 -101.13 REMARK 500 THR B 153 61.98 36.20 REMARK 500 THR B 239 147.91 84.02 REMARK 500 THR C 153 59.20 39.58 REMARK 500 THR C 239 146.55 82.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 131 OD1 REMARK 620 2 GLU A 161 OE1 91.1 REMARK 620 3 HOH A 513 O 169.6 94.3 REMARK 620 4 HOH A 526 O 89.6 179.1 85.1 REMARK 620 5 HOH A 553 O 86.6 93.9 84.1 86.7 REMARK 620 6 HOH A 652 O 119.1 102.6 68.4 76.5 148.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 131 OD1 REMARK 620 2 GLU B 161 OE1 86.2 REMARK 620 3 GLU B 161 OE2 129.4 55.3 REMARK 620 4 HOH B 505 O 156.6 113.3 61.5 REMARK 620 5 HOH B 525 O 84.0 167.2 137.5 78.2 REMARK 620 6 HOH B 575 O 86.3 106.9 77.0 76.0 80.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 131 OD1 REMARK 620 2 GLU C 161 OE1 92.5 REMARK 620 3 HOH C 510 O 177.7 86.0 REMARK 620 4 HOH C 524 O 93.2 173.1 88.3 REMARK 620 5 HOH C 592 O 91.9 100.0 86.6 83.7 REMARK 620 6 HOH C 629 O 99.8 106.2 82.4 69.0 150.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 403 DBREF 6CA4 A 121 369 UNP Q5XJA0 TYDP2_DANRE 121 369 DBREF 6CA4 B 121 369 UNP Q5XJA0 TYDP2_DANRE 121 369 DBREF 6CA4 C 121 369 UNP Q5XJA0 TYDP2_DANRE 121 369 SEQADV 6CA4 SER A 120 UNP Q5XJA0 EXPRESSION TAG SEQADV 6CA4 ASN A 136 UNP Q5XJA0 LEU 136 ENGINEERED MUTATION SEQADV 6CA4 SER A 139 UNP Q5XJA0 ALA 139 ENGINEERED MUTATION SEQADV 6CA4 THR A 239 UNP Q5XJA0 CYS 239 ENGINEERED MUTATION SEQADV 6CA4 ARG A 240 UNP Q5XJA0 LYS 240 ENGINEERED MUTATION SEQADV 6CA4 GLN A 309 UNP Q5XJA0 LYS 309 ENGINEERED MUTATION SEQADV 6CA4 LEU A 314 UNP Q5XJA0 LYS 314 ENGINEERED MUTATION SEQADV 6CA4 GLY A 315 UNP Q5XJA0 THR 315 ENGINEERED MUTATION SEQADV 6CA4 ILE A 316 UNP Q5XJA0 VAL 316 ENGINEERED MUTATION SEQADV 6CA4 THR A 317 UNP Q5XJA0 PRO 317 ENGINEERED MUTATION SEQADV 6CA4 ALA A 318 UNP Q5XJA0 TYR 318 ENGINEERED MUTATION SEQADV 6CA4 ALA A 319 UNP Q5XJA0 VAL 319 ENGINEERED MUTATION SEQADV 6CA4 CYS A 320 UNP Q5XJA0 SER 320 ENGINEERED MUTATION SEQADV 6CA4 LYS A 321 UNP Q5XJA0 ARG 321 ENGINEERED MUTATION SEQADV 6CA4 LEU A 322 UNP Q5XJA0 CYS 322 ENGINEERED MUTATION SEQADV 6CA4 SER B 120 UNP Q5XJA0 EXPRESSION TAG SEQADV 6CA4 ASN B 136 UNP Q5XJA0 LEU 136 ENGINEERED MUTATION SEQADV 6CA4 SER B 139 UNP Q5XJA0 ALA 139 ENGINEERED MUTATION SEQADV 6CA4 THR B 239 UNP Q5XJA0 CYS 239 ENGINEERED MUTATION SEQADV 6CA4 ARG B 240 UNP Q5XJA0 LYS 240 ENGINEERED MUTATION SEQADV 6CA4 GLN B 309 UNP Q5XJA0 LYS 309 ENGINEERED MUTATION SEQADV 6CA4 LEU B 314 UNP Q5XJA0 LYS 314 ENGINEERED MUTATION SEQADV 6CA4 GLY B 315 UNP Q5XJA0 THR 315 ENGINEERED MUTATION SEQADV 6CA4 ILE B 316 UNP Q5XJA0 VAL 316 ENGINEERED MUTATION SEQADV 6CA4 THR B 317 UNP Q5XJA0 PRO 317 ENGINEERED MUTATION SEQADV 6CA4 ALA B 318 UNP Q5XJA0 TYR 318 ENGINEERED MUTATION SEQADV 6CA4 ALA B 319 UNP Q5XJA0 VAL 319 ENGINEERED MUTATION SEQADV 6CA4 CYS B 320 UNP Q5XJA0 SER 320 ENGINEERED MUTATION SEQADV 6CA4 LYS B 321 UNP Q5XJA0 ARG 321 ENGINEERED MUTATION SEQADV 6CA4 LEU B 322 UNP Q5XJA0 CYS 322 ENGINEERED MUTATION SEQADV 6CA4 SER C 120 UNP Q5XJA0 EXPRESSION TAG SEQADV 6CA4 ASN C 136 UNP Q5XJA0 LEU 136 ENGINEERED MUTATION SEQADV 6CA4 SER C 139 UNP Q5XJA0 ALA 139 ENGINEERED MUTATION SEQADV 6CA4 THR C 239 UNP Q5XJA0 CYS 239 ENGINEERED MUTATION SEQADV 6CA4 ARG C 240 UNP Q5XJA0 LYS 240 ENGINEERED MUTATION SEQADV 6CA4 GLN C 309 UNP Q5XJA0 LYS 309 ENGINEERED MUTATION SEQADV 6CA4 LEU C 314 UNP Q5XJA0 LYS 314 ENGINEERED MUTATION SEQADV 6CA4 GLY C 315 UNP Q5XJA0 THR 315 ENGINEERED MUTATION SEQADV 6CA4 ILE C 316 UNP Q5XJA0 VAL 316 ENGINEERED MUTATION SEQADV 6CA4 THR C 317 UNP Q5XJA0 PRO 317 ENGINEERED MUTATION SEQADV 6CA4 ALA C 318 UNP Q5XJA0 TYR 318 ENGINEERED MUTATION SEQADV 6CA4 ALA C 319 UNP Q5XJA0 VAL 319 ENGINEERED MUTATION SEQADV 6CA4 CYS C 320 UNP Q5XJA0 SER 320 ENGINEERED MUTATION SEQADV 6CA4 LYS C 321 UNP Q5XJA0 ARG 321 ENGINEERED MUTATION SEQADV 6CA4 LEU C 322 UNP Q5XJA0 CYS 322 ENGINEERED MUTATION SEQRES 1 A 250 SER SER LYS LEU SER ILE ILE SER TRP ASN VAL ASP GLY SEQRES 2 A 250 LEU ASP THR ASN ASN LEU SER ASP ARG ALA ARG GLY LEU SEQRES 3 A 250 CYS SER TYR LEU ALA LEU TYR THR PRO ASP VAL VAL PHE SEQRES 4 A 250 LEU GLN GLU LEU ILE PRO ALA TYR VAL GLN TYR LEU LYS SEQRES 5 A 250 LYS ARG ALA VAL SER TYR LEU PHE PHE GLU GLY SER ASP SEQRES 6 A 250 ASP GLY TYR PHE THR GLY ILE MET LEU ARG LYS SER ARG SEQRES 7 A 250 VAL LYS PHE LEU GLU SER GLU ILE ILE CYS PHE PRO THR SEQRES 8 A 250 THR GLN MET MET ARG ASN LEU LEU ILE ALA GLN VAL THR SEQRES 9 A 250 PHE SER GLY GLN LYS LEU TYR LEU MET THR SER HIS LEU SEQRES 10 A 250 GLU SER THR ARG ASN GLN SER GLN GLU ARG THR LYS GLN SEQRES 11 A 250 LEU ARG VAL VAL LEU GLN LYS ILE LYS GLU ALA PRO GLU SEQRES 12 A 250 ASP ALA ILE VAL ILE PHE ALA GLY ASP THR ASN LEU ARG SEQRES 13 A 250 ASP ALA GLU VAL ALA ASN VAL GLY GLY LEU PRO ALA GLY SEQRES 14 A 250 VAL CYS ASP VAL TRP GLU GLN LEU GLY LYS GLN GLU HIS SEQRES 15 A 250 CYS ARG TYR THR TRP ASP THR GLN ALA ASN SER ASN LEU SEQRES 16 A 250 GLY ILE THR ALA ALA CYS LYS LEU ARG PHE ASP ARG ILE SEQRES 17 A 250 PHE LEU ARG SER ALA LYS THR ALA PRO PRO VAL THR PRO SEQRES 18 A 250 ASP HIS MET ALA LEU ILE GLY MET GLU LYS LEU ASP CYS SEQRES 19 A 250 GLY ARG TYR THR SER ASP HIS TRP GLY ILE TYR CYS THR SEQRES 20 A 250 PHE ASN THR SEQRES 1 B 250 SER SER LYS LEU SER ILE ILE SER TRP ASN VAL ASP GLY SEQRES 2 B 250 LEU ASP THR ASN ASN LEU SER ASP ARG ALA ARG GLY LEU SEQRES 3 B 250 CYS SER TYR LEU ALA LEU TYR THR PRO ASP VAL VAL PHE SEQRES 4 B 250 LEU GLN GLU LEU ILE PRO ALA TYR VAL GLN TYR LEU LYS SEQRES 5 B 250 LYS ARG ALA VAL SER TYR LEU PHE PHE GLU GLY SER ASP SEQRES 6 B 250 ASP GLY TYR PHE THR GLY ILE MET LEU ARG LYS SER ARG SEQRES 7 B 250 VAL LYS PHE LEU GLU SER GLU ILE ILE CYS PHE PRO THR SEQRES 8 B 250 THR GLN MET MET ARG ASN LEU LEU ILE ALA GLN VAL THR SEQRES 9 B 250 PHE SER GLY GLN LYS LEU TYR LEU MET THR SER HIS LEU SEQRES 10 B 250 GLU SER THR ARG ASN GLN SER GLN GLU ARG THR LYS GLN SEQRES 11 B 250 LEU ARG VAL VAL LEU GLN LYS ILE LYS GLU ALA PRO GLU SEQRES 12 B 250 ASP ALA ILE VAL ILE PHE ALA GLY ASP THR ASN LEU ARG SEQRES 13 B 250 ASP ALA GLU VAL ALA ASN VAL GLY GLY LEU PRO ALA GLY SEQRES 14 B 250 VAL CYS ASP VAL TRP GLU GLN LEU GLY LYS GLN GLU HIS SEQRES 15 B 250 CYS ARG TYR THR TRP ASP THR GLN ALA ASN SER ASN LEU SEQRES 16 B 250 GLY ILE THR ALA ALA CYS LYS LEU ARG PHE ASP ARG ILE SEQRES 17 B 250 PHE LEU ARG SER ALA LYS THR ALA PRO PRO VAL THR PRO SEQRES 18 B 250 ASP HIS MET ALA LEU ILE GLY MET GLU LYS LEU ASP CYS SEQRES 19 B 250 GLY ARG TYR THR SER ASP HIS TRP GLY ILE TYR CYS THR SEQRES 20 B 250 PHE ASN THR SEQRES 1 C 250 SER SER LYS LEU SER ILE ILE SER TRP ASN VAL ASP GLY SEQRES 2 C 250 LEU ASP THR ASN ASN LEU SER ASP ARG ALA ARG GLY LEU SEQRES 3 C 250 CYS SER TYR LEU ALA LEU TYR THR PRO ASP VAL VAL PHE SEQRES 4 C 250 LEU GLN GLU LEU ILE PRO ALA TYR VAL GLN TYR LEU LYS SEQRES 5 C 250 LYS ARG ALA VAL SER TYR LEU PHE PHE GLU GLY SER ASP SEQRES 6 C 250 ASP GLY TYR PHE THR GLY ILE MET LEU ARG LYS SER ARG SEQRES 7 C 250 VAL LYS PHE LEU GLU SER GLU ILE ILE CYS PHE PRO THR SEQRES 8 C 250 THR GLN MET MET ARG ASN LEU LEU ILE ALA GLN VAL THR SEQRES 9 C 250 PHE SER GLY GLN LYS LEU TYR LEU MET THR SER HIS LEU SEQRES 10 C 250 GLU SER THR ARG ASN GLN SER GLN GLU ARG THR LYS GLN SEQRES 11 C 250 LEU ARG VAL VAL LEU GLN LYS ILE LYS GLU ALA PRO GLU SEQRES 12 C 250 ASP ALA ILE VAL ILE PHE ALA GLY ASP THR ASN LEU ARG SEQRES 13 C 250 ASP ALA GLU VAL ALA ASN VAL GLY GLY LEU PRO ALA GLY SEQRES 14 C 250 VAL CYS ASP VAL TRP GLU GLN LEU GLY LYS GLN GLU HIS SEQRES 15 C 250 CYS ARG TYR THR TRP ASP THR GLN ALA ASN SER ASN LEU SEQRES 16 C 250 GLY ILE THR ALA ALA CYS LYS LEU ARG PHE ASP ARG ILE SEQRES 17 C 250 PHE LEU ARG SER ALA LYS THR ALA PRO PRO VAL THR PRO SEQRES 18 C 250 ASP HIS MET ALA LEU ILE GLY MET GLU LYS LEU ASP CYS SEQRES 19 C 250 GLY ARG TYR THR SER ASP HIS TRP GLY ILE TYR CYS THR SEQRES 20 C 250 PHE ASN THR HET MG A 401 1 HET EDO A 402 10 HET EDO A 403 10 HET EDO A 404 10 HET EDO A 405 10 HET EDO A 406 10 HET EDO A 407 10 HET EDO A 408 10 HET EDO A 409 10 HET MG B 401 1 HET EDO B 402 10 HET EDO B 403 10 HET MLI B 404 9 HET MG C 401 1 HET EDO C 402 10 HET EDO C 403 10 HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM MLI MALONATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 4 MG 3(MG 2+) FORMUL 5 EDO 12(C2 H6 O2) FORMUL 16 MLI C3 H2 O4 2- FORMUL 20 HOH *465(H2 O) HELIX 1 AA1 ASN A 137 THR A 153 1 17 HELIX 2 AA2 ILE A 163 ALA A 174 1 12 HELIX 3 AA3 THR A 239 ASN A 241 5 3 HELIX 4 AA4 GLN A 242 ALA A 260 1 19 HELIX 5 AA5 ALA A 277 VAL A 282 1 6 HELIX 6 AA6 VAL A 292 LEU A 296 1 5 HELIX 7 AA7 GLN A 299 ARG A 303 5 5 HELIX 8 AA8 ASN B 137 THR B 153 1 17 HELIX 9 AA9 ILE B 163 ALA B 174 1 12 HELIX 10 AB1 THR B 239 ASN B 241 5 3 HELIX 11 AB2 GLN B 242 ALA B 260 1 19 HELIX 12 AB3 ALA B 277 VAL B 282 1 6 HELIX 13 AB4 VAL B 292 LEU B 296 1 5 HELIX 14 AB5 GLN B 299 ARG B 303 5 5 HELIX 15 AB6 ASN C 137 THR C 153 1 17 HELIX 16 AB7 ILE C 163 ALA C 174 1 12 HELIX 17 AB8 THR C 239 ASN C 241 5 3 HELIX 18 AB9 GLN C 242 ALA C 260 1 19 HELIX 19 AC1 ARG C 275 VAL C 282 1 8 HELIX 20 AC2 VAL C 292 GLN C 299 1 8 SHEET 1 AA1 6 TYR A 177 GLU A 181 0 SHEET 2 AA1 6 PHE A 188 ARG A 194 -1 O ILE A 191 N PHE A 180 SHEET 3 AA1 6 VAL A 156 LEU A 162 -1 N LEU A 162 O PHE A 188 SHEET 4 AA1 6 LEU A 123 ASN A 129 1 N ILE A 126 O PHE A 158 SHEET 5 AA1 6 GLY A 362 ASN A 368 -1 O CYS A 365 N ILE A 125 SHEET 6 AA1 6 THR A 339 ILE A 346 -1 N ALA A 344 O TYR A 364 SHEET 1 AA2 6 LYS A 199 CYS A 207 0 SHEET 2 AA2 6 ASN A 216 PHE A 224 -1 O GLN A 221 N GLU A 202 SHEET 3 AA2 6 GLN A 227 THR A 233 -1 O LEU A 231 N ALA A 220 SHEET 4 AA2 6 ALA A 264 ASP A 271 1 O ILE A 265 N TYR A 230 SHEET 5 AA2 6 ASP A 325 ARG A 330 -1 O PHE A 328 N PHE A 268 SHEET 6 AA2 6 VAL A 289 ASP A 291 -1 N CYS A 290 O LEU A 329 SHEET 1 AA3 2 TRP A 306 ASP A 307 0 SHEET 2 AA3 2 LYS A 321 LEU A 322 -1 O LEU A 322 N TRP A 306 SHEET 1 AA4 6 TYR B 177 GLU B 181 0 SHEET 2 AA4 6 PHE B 188 ARG B 194 -1 O LEU B 193 N LEU B 178 SHEET 3 AA4 6 VAL B 156 LEU B 162 -1 N LEU B 159 O GLY B 190 SHEET 4 AA4 6 LEU B 123 ASN B 129 1 N ILE B 126 O PHE B 158 SHEET 5 AA4 6 GLY B 362 ASN B 368 -1 O CYS B 365 N ILE B 125 SHEET 6 AA4 6 THR B 339 ILE B 346 -1 N THR B 339 O ASN B 368 SHEET 1 AA5 6 LYS B 199 CYS B 207 0 SHEET 2 AA5 6 ASN B 216 PHE B 224 -1 O GLN B 221 N GLU B 202 SHEET 3 AA5 6 GLN B 227 THR B 233 -1 O LEU B 231 N ALA B 220 SHEET 4 AA5 6 ALA B 264 ASP B 271 1 O ILE B 265 N TYR B 230 SHEET 5 AA5 6 ASP B 325 ARG B 330 -1 O ARG B 330 N VAL B 266 SHEET 6 AA5 6 VAL B 289 ASP B 291 -1 N CYS B 290 O LEU B 329 SHEET 1 AA6 2 TRP B 306 ASP B 307 0 SHEET 2 AA6 2 LYS B 321 LEU B 322 -1 O LEU B 322 N TRP B 306 SHEET 1 AA7 6 TYR C 177 GLU C 181 0 SHEET 2 AA7 6 PHE C 188 ARG C 194 -1 O ILE C 191 N PHE C 180 SHEET 3 AA7 6 VAL C 156 LEU C 162 -1 N LEU C 159 O GLY C 190 SHEET 4 AA7 6 LYS C 122 ASN C 129 1 N ILE C 126 O PHE C 158 SHEET 5 AA7 6 GLY C 362 ASN C 368 -1 O ILE C 363 N SER C 127 SHEET 6 AA7 6 THR C 339 ILE C 346 -1 N THR C 339 O ASN C 368 SHEET 1 AA8 6 LYS C 199 CYS C 207 0 SHEET 2 AA8 6 ASN C 216 PHE C 224 -1 O GLN C 221 N GLU C 202 SHEET 3 AA8 6 GLN C 227 SER C 234 -1 O GLN C 227 N PHE C 224 SHEET 4 AA8 6 ALA C 264 ASP C 271 1 O ILE C 265 N TYR C 230 SHEET 5 AA8 6 ASP C 325 ARG C 330 -1 O ARG C 330 N VAL C 266 SHEET 6 AA8 6 VAL C 289 ASP C 291 -1 N CYS C 290 O LEU C 329 LINK OD1 ASP A 131 MG MG A 401 1555 1555 2.22 LINK OE1 GLU A 161 MG MG A 401 1555 1555 2.24 LINK MG MG A 401 O HOH A 513 1555 1555 2.57 LINK MG MG A 401 O HOH A 526 1555 1555 2.44 LINK MG MG A 401 O HOH A 553 1555 1555 2.36 LINK MG MG A 401 O HOH A 652 1555 1555 2.34 LINK OD1 ASP B 131 MG MG B 401 1555 1555 2.36 LINK OE1 GLU B 161 MG MG B 401 1555 1555 2.17 LINK OE2 GLU B 161 MG MG B 401 1555 1555 2.51 LINK MG MG B 401 O HOH B 505 1555 1555 2.17 LINK MG MG B 401 O HOH B 525 1555 1555 2.48 LINK MG MG B 401 O HOH B 575 1555 1555 2.29 LINK OD1 ASP C 131 MG MG C 401 1555 1555 2.19 LINK OE1 GLU C 161 MG MG C 401 1555 1555 2.31 LINK MG MG C 401 O HOH C 510 1555 1555 2.95 LINK MG MG C 401 O HOH C 524 1555 1555 2.46 LINK MG MG C 401 O HOH C 592 1555 1555 2.32 LINK MG MG C 401 O HOH C 629 1555 1555 2.27 SITE 1 AC1 6 ASP A 131 GLU A 161 HOH A 513 HOH A 526 SITE 2 AC1 6 HOH A 553 HOH A 652 SITE 1 AC2 5 LYS A 122 ASP A 341 THR A 366 THR B 210 SITE 2 AC2 5 THR B 211 SITE 1 AC3 6 GLU A 202 GLU A 204 ILE A 219 GLN A 221 SITE 2 AC3 6 TYR A 230 HOH A 502 SITE 1 AC4 6 GLU A 300 HIS A 301 ARG A 303 TYR A 304 SITE 2 AC4 6 MET A 348 HOH A 532 SITE 1 AC5 6 PHE A 208 PRO A 209 THR A 210 THR A 211 SITE 2 AC5 6 GLU A 245 LYS A 248 SITE 1 AC6 5 LYS A 195 ALA A 332 LYS A 333 ALA A 335 SITE 2 AC6 5 HOH A 605 SITE 1 AC7 3 GLU A 181 SER A 203 HOH A 520 SITE 1 AC8 4 ARG A 173 ALA A 174 EDO A 409 HOH A 519 SITE 1 AC9 4 THR A 153 EDO A 408 HOH A 519 HOH A 606 SITE 1 AD1 5 ASP B 131 GLU B 161 HOH B 505 HOH B 525 SITE 2 AD1 5 HOH B 575 SITE 1 AD2 6 PHE B 208 PRO B 209 THR B 210 GLU B 245 SITE 2 AD2 6 GLN B 249 VAL B 252 SITE 1 AD3 6 LEU B 274 LEU B 322 ARG B 323 ARG B 326 SITE 2 AD3 6 MLI B 404 HOH B 538 SITE 1 AD4 9 ASP B 276 ALA B 277 ARG B 323 ARG B 326 SITE 2 AD4 9 EDO B 403 HOH B 512 HOH B 538 HOH B 548 SITE 3 AD4 9 HOH B 559 SITE 1 AD5 6 ASP C 131 GLU C 161 HOH C 510 HOH C 524 SITE 2 AD5 6 HOH C 592 HOH C 629 SITE 1 AD6 7 GLY A 283 HOH A 501 GLU C 181 SER C 203 SITE 2 AD6 7 GLU C 204 LEU C 218 HOH C 573 SITE 1 AD7 4 ARG C 330 SER C 331 LYS C 333 HOH C 522 CRYST1 57.034 98.260 134.740 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017533 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010177 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007422 0.00000