data_6CAB # _entry.id 6CAB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6CAB pdb_00006cab 10.2210/pdb6cab/pdb WWPDB D_1000232409 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-05-30 2 'Structure model' 1 1 2018-10-31 3 'Structure model' 1 2 2019-11-20 4 'Structure model' 1 3 2023-10-04 5 'Structure model' 2 0 2024-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Author supporting evidence' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Atomic model' 9 5 'Structure model' 'Data collection' 10 5 'Structure model' 'Derived calculations' 11 5 'Structure model' 'Non-polymer description' 12 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' pdbx_audit_support 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_initial_refinement_model 8 4 'Structure model' pdbx_struct_conn_angle 9 4 'Structure model' struct_conn 10 5 'Structure model' atom_site 11 5 'Structure model' chem_comp 12 5 'Structure model' chem_comp_atom 13 5 'Structure model' chem_comp_bond 14 5 'Structure model' pdbx_entity_nonpoly 15 5 'Structure model' pdbx_entry_details 16 5 'Structure model' pdbx_nonpoly_scheme 17 5 'Structure model' pdbx_struct_conn_angle 18 5 'Structure model' struct_conn 19 5 'Structure model' struct_site 20 5 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.page_first' 2 2 'Structure model' '_citation.pdbx_database_id_PubMed' 3 2 'Structure model' '_citation.title' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 3 'Structure model' '_pdbx_audit_support.funding_organization' 6 4 'Structure model' '_database_2.pdbx_DOI' 7 4 'Structure model' '_database_2.pdbx_database_accession' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 24 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 25 4 'Structure model' '_pdbx_struct_conn_angle.value' 26 4 'Structure model' '_struct_conn.conn_type_id' 27 4 'Structure model' '_struct_conn.id' 28 4 'Structure model' '_struct_conn.pdbx_dist_value' 29 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 30 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 31 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 32 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 33 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 34 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 35 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 36 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 37 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 38 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 39 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 40 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 41 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 42 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 43 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 44 4 'Structure model' '_struct_conn.ptnr2_symmetry' 45 5 'Structure model' '_atom_site.B_iso_or_equiv' 46 5 'Structure model' '_atom_site.Cartn_x' 47 5 'Structure model' '_atom_site.Cartn_y' 48 5 'Structure model' '_atom_site.Cartn_z' 49 5 'Structure model' '_atom_site.auth_atom_id' 50 5 'Structure model' '_atom_site.auth_comp_id' 51 5 'Structure model' '_atom_site.label_atom_id' 52 5 'Structure model' '_atom_site.label_comp_id' 53 5 'Structure model' '_atom_site.type_symbol' 54 5 'Structure model' '_chem_comp.formula' 55 5 'Structure model' '_chem_comp.formula_weight' 56 5 'Structure model' '_chem_comp.id' 57 5 'Structure model' '_chem_comp.mon_nstd_flag' 58 5 'Structure model' '_chem_comp.name' 59 5 'Structure model' '_chem_comp.type' 60 5 'Structure model' '_pdbx_entity_nonpoly.comp_id' 61 5 'Structure model' '_pdbx_nonpoly_scheme.mon_id' 62 5 'Structure model' '_pdbx_nonpoly_scheme.pdb_mon_id' 63 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 64 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 65 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 66 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 67 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 68 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 69 5 'Structure model' '_struct_site.details' 70 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 71 5 'Structure model' '_struct_site_gen.auth_comp_id' 72 5 'Structure model' '_struct_site_gen.label_comp_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6CAB _pdbx_database_status.recvd_initial_deposition_date 2018-01-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, W.' 1 ? 'Szostak, J.W.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Elife _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2050-084X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 7 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystallographic observation of nonenzymatic RNA primer extension.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.7554/eLife.36422 _citation.pdbx_database_id_PubMed 29851379 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, W.' 1 0000-0003-4811-4384 primary 'Walton, T.' 2 0000-0001-6812-1579 primary 'Li, L.' 3 0000-0003-4766-5782 primary 'Szostak, J.W.' 4 0000-0003-4131-1203 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') ; 4512.804 2 ? ? ? ? 2 non-polymer syn "GUANOSINE-5'-MONOPHOSPHATE" 363.221 4 ? ? ? ? 3 non-polymer syn 'STRONTIUM ION' 87.620 4 ? ? ? ? 4 water nat water 18.015 8 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(LCC)(LCC)(LCC)(LCG)ACUUAAGUCG' _entity_poly.pdbx_seq_one_letter_code_can NNNGACUUAAGUCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-MONOPHOSPHATE" 5GP 3 'STRONTIUM ION' SR 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LCC n 1 2 LCC n 1 3 LCC n 1 4 LCG n 1 5 A n 1 6 C n 1 7 U n 1 8 U n 1 9 A n 1 10 A n 1 11 G n 1 12 U n 1 13 C n 1 14 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 14 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5GP non-polymer . "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 LCC 'RNA linking' . '[(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H16 N3 O8 P' 349.234 LCG 'RNA linking' n '[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H14 N5 O8 P' 375.231 SR non-polymer . 'STRONTIUM ION' ? 'Sr 2' 87.620 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LCC 1 1 1 LCC LCC A . n A 1 2 LCC 2 2 2 LCC LCC A . n A 1 3 LCC 3 3 3 LCC LCC A . n A 1 4 LCG 4 4 4 LCG LCG A . n A 1 5 A 5 5 5 A A A . n A 1 6 C 6 6 6 C C A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 G 14 14 14 G G A . n B 1 1 LCC 1 1 1 LCC LCC B . n B 1 2 LCC 2 2 2 LCC LCC B . n B 1 3 LCC 3 3 3 LCC LCC B . n B 1 4 LCG 4 4 4 LCG LCG B . n B 1 5 A 5 5 5 A A B . n B 1 6 C 6 6 6 C C B . n B 1 7 U 7 7 7 U U B . n B 1 8 U 8 8 8 U U B . n B 1 9 A 9 9 9 A A B . n B 1 10 A 10 10 10 A A B . n B 1 11 G 11 11 11 G G B . n B 1 12 U 12 12 12 U U B . n B 1 13 C 13 13 13 C C B . n B 1 14 G 14 14 14 G G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5GP 1 101 101 5GP G A . D 2 5GP 1 102 102 5GP G A . E 3 SR 1 103 103 SR SR A . F 3 SR 1 104 105 SR SR A . G 2 5GP 1 101 101 5GP G B . H 2 5GP 1 102 102 5GP G B . I 3 SR 1 103 103 SR SR B . J 3 SR 1 104 106 SR SR B . K 4 HOH 1 201 201 HOH HOH A . K 4 HOH 2 202 202 HOH HOH A . K 4 HOH 3 203 203 HOH HOH A . L 4 HOH 1 201 201 HOH HOH B . L 4 HOH 2 202 202 HOH HOH B . L 4 HOH 3 203 203 HOH HOH B . L 4 HOH 4 204 204 HOH HOH B . L 4 HOH 5 205 205 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0158 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.entry_id 6CAB _cell.length_a 48.707 _cell.length_b 48.707 _cell.length_c 80.580 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CAB _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6CAB _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.8 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 56.3 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;10% v/v (+/-)-2-Methyl-2,4-pentanediol, 0.040 M Sodium cacodylate trihydrate pH 7.0, 0.012 M Spermine tetrahydrochloride, 0.080 M Sodium chloride, 0.020 M Strontium chloride ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 99 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MAR CCD 130 mm' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-10-25 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 6CAB _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.500 _reflns.number_obs 4047 _reflns.number_all ? _reflns.percent_possible_obs 97.5 _reflns.pdbx_Rmerge_I_obs 0.09600 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.1000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.500 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_all 82.0 _reflns_shell.Rmerge_I_obs 0.44000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.960 _reflns_shell.pdbx_redundancy 3.10 _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 328 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 6CAB _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 3729 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.00 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 93.9 _refine.ls_R_factor_obs 0.218 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.215 _refine.ls_R_factor_R_free 0.280 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.500 _refine.ls_number_reflns_R_free 176 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.961 _refine.correlation_coeff_Fo_to_Fc_free 0.942 _refine.B_iso_mean 73.72 _refine.aniso_B[1][1] 0.05000 _refine.aniso_B[2][2] 0.05000 _refine.aniso_B[3][3] -0.16000 _refine.aniso_B[1][2] 0.03000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS ; _refine.pdbx_starting_model 5DHC _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.491 _refine.pdbx_overall_ESU_R_Free 0.316 _refine.overall_SU_ML 0.302 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 15.392 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 598 _refine_hist.pdbx_number_atoms_ligand 100 _refine_hist.number_atoms_solvent 8 _refine_hist.number_atoms_total 706 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 50.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.021 0.019 ? 762 'X-RAY DIFFRACTION' ? r_bond_other_d 0.043 0.025 ? 308 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.668 2.222 ? 1164 'X-RAY DIFFRACTION' ? r_angle_other_deg 4.212 3.297 ? 772 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.167 0.200 ? 142 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 356 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 104 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 6.306 8.141 ? 759 'X-RAY DIFFRACTION' ? r_scbond_other 6.125 8.095 ? 755 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 8.801 12.142 ? 1158 'X-RAY DIFFRACTION' ? r_long_range_B_refined 10.495 78.508 ? 1130 'X-RAY DIFFRACTION' ? r_long_range_B_other 10.573 78.634 ? 1131 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.56 _refine_ls_shell.number_reflns_R_work 238 _refine_ls_shell.R_factor_R_work 0.3570 _refine_ls_shell.percent_reflns_obs 80.32 _refine_ls_shell.R_factor_R_free 0.4010 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 11 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 6CAB _struct.title 'RNA-dGMP complex with Sr ion' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6CAB _struct_keywords.text 'RNA, activated monomer' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 4 ? L N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6CAB _struct_ref.pdbx_db_accession 6CAB _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6CAB A 1 ? 14 ? 6CAB 1 ? 14 ? 1 14 2 1 6CAB B 1 ? 14 ? 6CAB 1 ? 14 ? 1 14 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3410 ? 1 MORE -66 ? 1 'SSA (A^2)' 5670 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LCC 1 "O3'" ? ? ? 1_555 A LCC 2 P ? ? A LCC 1 A LCC 2 1_555 ? ? ? ? ? ? ? 1.585 ? ? covale2 covale both ? A LCC 2 "O3'" ? ? ? 1_555 A LCC 3 P ? ? A LCC 2 A LCC 3 1_555 ? ? ? ? ? ? ? 1.642 ? ? covale3 covale both ? A LCC 3 "O3'" ? ? ? 1_555 A LCG 4 P ? ? A LCC 3 A LCG 4 1_555 ? ? ? ? ? ? ? 1.629 ? ? covale4 covale both ? A LCG 4 "O3'" ? ? ? 1_555 A A 5 P ? ? A LCG 4 A A 5 1_555 ? ? ? ? ? ? ? 1.640 ? ? covale5 covale both ? B LCC 1 "O3'" ? ? ? 1_555 B LCC 2 P ? ? B LCC 1 B LCC 2 1_555 ? ? ? ? ? ? ? 1.622 ? ? covale6 covale both ? B LCC 2 "O3'" ? ? ? 1_555 B LCC 3 P ? ? B LCC 2 B LCC 3 1_555 ? ? ? ? ? ? ? 1.670 ? ? covale7 covale both ? B LCC 3 "O3'" ? ? ? 1_555 B LCG 4 P ? ? B LCC 3 B LCG 4 1_555 ? ? ? ? ? ? ? 1.673 ? ? covale8 covale both ? B LCG 4 "O3'" ? ? ? 1_555 B A 5 P ? ? B LCG 4 B A 5 1_555 ? ? ? ? ? ? ? 1.676 ? ? metalc1 metalc ? ? A G 14 O6 ? ? ? 1_555 E SR . SR ? ? A G 14 A SR 103 1_555 ? ? ? ? ? ? ? 2.860 ? ? metalc2 metalc ? ? C 5GP . N7 ? ? ? 1_555 E SR . SR ? ? A 5GP 101 A SR 103 1_555 ? ? ? ? ? ? ? 2.934 ? ? metalc3 metalc ? ? C 5GP . O6 ? ? ? 1_555 E SR . SR ? ? A 5GP 101 A SR 103 1_555 ? ? ? ? ? ? ? 2.952 ? ? metalc4 metalc ? ? C 5GP . "O3'" ? ? ? 1_555 F SR . SR ? ? A 5GP 101 A SR 104 1_555 ? ? ? ? ? ? ? 2.583 ? ? metalc5 metalc ? ? C 5GP . "O3'" ? ? ? 1_555 F SR . SR ? ? A 5GP 101 A SR 104 2_545 ? ? ? ? ? ? ? 2.553 ? ? metalc6 metalc ? ? E SR . SR ? ? ? 1_555 L HOH . O ? ? A SR 103 B HOH 201 1_555 ? ? ? ? ? ? ? 2.810 ? ? metalc7 metalc ? ? K HOH . O ? ? ? 1_555 I SR . SR ? ? A HOH 202 B SR 103 1_555 ? ? ? ? ? ? ? 2.774 ? ? metalc8 metalc ? ? B G 14 O6 ? ? ? 1_555 I SR . SR ? ? B G 14 B SR 103 1_555 ? ? ? ? ? ? ? 2.996 ? ? metalc9 metalc ? ? H 5GP . O6 ? ? ? 1_555 I SR . SR ? ? B 5GP 102 B SR 103 1_555 ? ? ? ? ? ? ? 2.921 ? ? metalc10 metalc ? ? H 5GP . "O3'" ? ? ? 1_555 J SR . SR ? ? B 5GP 102 B SR 104 1_555 ? ? ? ? ? ? ? 2.378 ? ? metalc11 metalc ? ? H 5GP . "O3'" ? ? ? 1_555 J SR . SR ? ? B 5GP 102 B SR 104 2_545 ? ? ? ? ? ? ? 2.376 ? ? hydrog1 hydrog ? ? A LCG 4 N1 ? ? ? 1_555 B C 13 N3 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A LCG 4 N2 ? ? ? 1_555 B C 13 O2 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A LCG 4 O6 ? ? ? 1_555 B C 13 N4 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 5 N1 ? ? ? 1_555 B U 12 N3 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 5 N6 ? ? ? 1_555 B U 12 O4 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 10 N1 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 10 N6 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 8 N3 ? ? ? 1_555 B A 9 N1 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 8 O4 ? ? ? 1_555 B A 9 N6 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 9 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 9 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 10 N1 ? ? ? 1_555 B U 7 N3 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 10 N6 ? ? ? 1_555 B U 7 O4 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 11 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 11 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 11 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 12 N3 ? ? ? 1_555 B A 5 N1 ? ? A U 12 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 12 O4 ? ? ? 1_555 B A 5 N6 ? ? A U 12 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 13 N3 ? ? ? 1_555 B LCG 4 N1 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 13 N4 ? ? ? 1_555 B LCG 4 O6 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 13 O2 ? ? ? 1_555 B LCG 4 N2 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 14 ? A G 14 ? 1_555 SR ? E SR . ? A SR 103 ? 1_555 N7 ? C 5GP . ? A 5GP 101 ? 1_555 64.0 ? 2 O6 ? A G 14 ? A G 14 ? 1_555 SR ? E SR . ? A SR 103 ? 1_555 O6 ? C 5GP . ? A 5GP 101 ? 1_555 74.3 ? 3 N7 ? C 5GP . ? A 5GP 101 ? 1_555 SR ? E SR . ? A SR 103 ? 1_555 O6 ? C 5GP . ? A 5GP 101 ? 1_555 63.3 ? 4 O6 ? A G 14 ? A G 14 ? 1_555 SR ? E SR . ? A SR 103 ? 1_555 O ? L HOH . ? B HOH 201 ? 1_555 148.0 ? 5 N7 ? C 5GP . ? A 5GP 101 ? 1_555 SR ? E SR . ? A SR 103 ? 1_555 O ? L HOH . ? B HOH 201 ? 1_555 84.6 ? 6 O6 ? C 5GP . ? A 5GP 101 ? 1_555 SR ? E SR . ? A SR 103 ? 1_555 O ? L HOH . ? B HOH 201 ? 1_555 86.7 ? 7 "O3'" ? C 5GP . ? A 5GP 101 ? 1_555 SR ? F SR . ? A SR 104 ? 1_555 "O3'" ? C 5GP . ? A 5GP 101 ? 1_555 0.0 ? 8 O ? K HOH . ? A HOH 202 ? 1_555 SR ? I SR . ? B SR 103 ? 1_555 O6 ? B G 14 ? B G 14 ? 1_555 136.9 ? 9 O ? K HOH . ? A HOH 202 ? 1_555 SR ? I SR . ? B SR 103 ? 1_555 O6 ? H 5GP . ? B 5GP 102 ? 1_555 68.6 ? 10 O6 ? B G 14 ? B G 14 ? 1_555 SR ? I SR . ? B SR 103 ? 1_555 O6 ? H 5GP . ? B 5GP 102 ? 1_555 69.1 ? 11 "O3'" ? H 5GP . ? B 5GP 102 ? 1_555 SR ? J SR . ? B SR 104 ? 1_555 "O3'" ? H 5GP . ? B 5GP 102 ? 1_555 0.0 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 5GP 101 ? 8 'binding site for residue 5GP A 101' AC2 Software A 5GP 102 ? 4 'binding site for residue 5GP A 102' AC3 Software A SR 103 ? 3 'binding site for residue SR A 103' AC4 Software A SR 104 ? 3 'binding site for residue SR A 104' AC5 Software B 5GP 101 ? 4 'binding site for residue 5GP B 101' AC6 Software B 5GP 102 ? 8 'binding site for residue 5GP B 102' AC7 Software B SR 103 ? 3 'binding site for residue SR B 103' AC8 Software B SR 104 ? 3 'binding site for residue SR B 104' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 G A 14 ? G A 14 . ? 1_555 ? 2 AC1 8 G A 14 ? G A 14 . ? 3_655 ? 3 AC1 8 SR E . ? SR A 103 . ? 1_555 ? 4 AC1 8 SR F . ? SR A 104 . ? 2_545 ? 5 AC1 8 SR F . ? SR A 104 . ? 3_655 ? 6 AC1 8 SR F . ? SR A 104 . ? 1_555 ? 7 AC1 8 5GP G . ? 5GP B 101 . ? 1_555 ? 8 AC1 8 5GP G . ? 5GP B 101 . ? 2_545 ? 9 AC2 4 HOH K . ? HOH A 202 . ? 1_555 ? 10 AC2 4 G B 14 ? G B 14 . ? 2_545 ? 11 AC2 4 5GP H . ? 5GP B 102 . ? 2_545 ? 12 AC2 4 5GP H . ? 5GP B 102 . ? 1_555 ? 13 AC3 3 G A 14 ? G A 14 . ? 1_555 ? 14 AC3 3 5GP C . ? 5GP A 101 . ? 1_555 ? 15 AC3 3 HOH L . ? HOH B 201 . ? 1_555 ? 16 AC4 3 5GP C . ? 5GP A 101 . ? 3_655 ? 17 AC4 3 5GP C . ? 5GP A 101 . ? 1_555 ? 18 AC4 3 5GP C . ? 5GP A 101 . ? 2_545 ? 19 AC5 4 G A 14 ? G A 14 . ? 3_655 ? 20 AC5 4 5GP C . ? 5GP A 101 . ? 3_655 ? 21 AC5 4 5GP C . ? 5GP A 101 . ? 1_555 ? 22 AC5 4 HOH L . ? HOH B 201 . ? 1_555 ? 23 AC6 8 5GP D . ? 5GP A 102 . ? 3_655 ? 24 AC6 8 5GP D . ? 5GP A 102 . ? 1_555 ? 25 AC6 8 G B 14 ? G B 14 . ? 1_555 ? 26 AC6 8 G B 14 ? G B 14 . ? 2_545 ? 27 AC6 8 SR I . ? SR B 103 . ? 1_555 ? 28 AC6 8 SR J . ? SR B 104 . ? 3_655 ? 29 AC6 8 SR J . ? SR B 104 . ? 2_545 ? 30 AC6 8 SR J . ? SR B 104 . ? 1_555 ? 31 AC7 3 HOH K . ? HOH A 202 . ? 1_555 ? 32 AC7 3 G B 14 ? G B 14 . ? 1_555 ? 33 AC7 3 5GP H . ? 5GP B 102 . ? 1_555 ? 34 AC8 3 5GP H . ? 5GP B 102 . ? 3_655 ? 35 AC8 3 5GP H . ? 5GP B 102 . ? 1_555 ? 36 AC8 3 5GP H . ? 5GP B 102 . ? 2_545 ? # _pdbx_entry_details.entry_id 6CAB _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A LCC 1 ? ? "O3'" A LCC 1 ? ? P A LCC 2 ? ? 144.83 119.70 25.13 1.20 Y 2 1 "O3'" A LCC 1 ? ? P A LCC 2 ? ? "O5'" A LCC 2 ? ? 80.05 104.00 -23.95 1.90 Y 3 1 "C3'" A LCC 2 ? ? "O3'" A LCC 2 ? ? P A LCC 3 ? ? 130.80 119.70 11.10 1.20 Y 4 1 "O3'" A LCC 2 ? ? P A LCC 3 ? ? "O5'" A LCC 3 ? ? 86.75 104.00 -17.25 1.90 Y 5 1 "O3'" A LCC 3 ? ? P A LCG 4 ? ? "O5'" A LCG 4 ? ? 90.85 104.00 -13.15 1.90 Y 6 1 "O3'" A LCG 4 ? ? P A A 5 ? ? OP2 A A 5 ? ? 122.55 110.50 12.05 1.10 Y 7 1 "C3'" B LCC 1 ? ? "O3'" B LCC 1 ? ? P B LCC 2 ? ? 147.89 119.70 28.19 1.20 Y 8 1 "O3'" B LCC 1 ? ? P B LCC 2 ? ? "O5'" B LCC 2 ? ? 125.36 104.00 21.36 1.90 Y 9 1 "C3'" B LCC 2 ? ? "O3'" B LCC 2 ? ? P B LCC 3 ? ? 128.24 119.70 8.54 1.20 Y 10 1 "C3'" B LCC 3 ? ? "O3'" B LCC 3 ? ? P B LCG 4 ? ? 129.05 119.70 9.35 1.20 Y 11 1 "O3'" B LCC 3 ? ? P B LCG 4 ? ? "O5'" B LCG 4 ? ? 137.47 104.00 33.47 1.90 Y 12 1 "O3'" B LCG 4 ? ? P B A 5 ? ? OP1 B A 5 ? ? 85.18 105.20 -20.02 2.20 Y # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A SR 104 ? F SR . 2 1 B SR 104 ? J SR . 3 1 B HOH 203 ? L HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5GP P P N N 1 5GP O1P O N N 2 5GP O2P O N N 3 5GP O3P O N N 4 5GP "O5'" O N N 5 5GP "C5'" C N N 6 5GP "C4'" C N R 7 5GP "O4'" O N N 8 5GP "C3'" C N S 9 5GP "O3'" O N N 10 5GP "C2'" C N R 11 5GP "O2'" O N N 12 5GP "C1'" C N R 13 5GP N9 N Y N 14 5GP C8 C Y N 15 5GP N7 N Y N 16 5GP C5 C Y N 17 5GP C6 C N N 18 5GP O6 O N N 19 5GP N1 N N N 20 5GP C2 C N N 21 5GP N2 N N N 22 5GP N3 N N N 23 5GP C4 C Y N 24 5GP HOP2 H N N 25 5GP HOP3 H N N 26 5GP "H5'1" H N N 27 5GP "H5'2" H N N 28 5GP "H4'" H N N 29 5GP "H3'" H N N 30 5GP "HO3'" H N N 31 5GP "H2'" H N N 32 5GP "HO2'" H N N 33 5GP "H1'" H N N 34 5GP H8 H N N 35 5GP HN1 H N N 36 5GP HN21 H N N 37 5GP HN22 H N N 38 A OP3 O N N 39 A P P N N 40 A OP1 O N N 41 A OP2 O N N 42 A "O5'" O N N 43 A "C5'" C N N 44 A "C4'" C N R 45 A "O4'" O N N 46 A "C3'" C N S 47 A "O3'" O N N 48 A "C2'" C N R 49 A "O2'" O N N 50 A "C1'" C N R 51 A N9 N Y N 52 A C8 C Y N 53 A N7 N Y N 54 A C5 C Y N 55 A C6 C Y N 56 A N6 N N N 57 A N1 N Y N 58 A C2 C Y N 59 A N3 N Y N 60 A C4 C Y N 61 A HOP3 H N N 62 A HOP2 H N N 63 A "H5'" H N N 64 A "H5''" H N N 65 A "H4'" H N N 66 A "H3'" H N N 67 A "HO3'" H N N 68 A "H2'" H N N 69 A "HO2'" H N N 70 A "H1'" H N N 71 A H8 H N N 72 A H61 H N N 73 A H62 H N N 74 A H2 H N N 75 C OP3 O N N 76 C P P N N 77 C OP1 O N N 78 C OP2 O N N 79 C "O5'" O N N 80 C "C5'" C N N 81 C "C4'" C N R 82 C "O4'" O N N 83 C "C3'" C N S 84 C "O3'" O N N 85 C "C2'" C N R 86 C "O2'" O N N 87 C "C1'" C N R 88 C N1 N N N 89 C C2 C N N 90 C O2 O N N 91 C N3 N N N 92 C C4 C N N 93 C N4 N N N 94 C C5 C N N 95 C C6 C N N 96 C HOP3 H N N 97 C HOP2 H N N 98 C "H5'" H N N 99 C "H5''" H N N 100 C "H4'" H N N 101 C "H3'" H N N 102 C "HO3'" H N N 103 C "H2'" H N N 104 C "HO2'" H N N 105 C "H1'" H N N 106 C H41 H N N 107 C H42 H N N 108 C H5 H N N 109 C H6 H N N 110 G OP3 O N N 111 G P P N N 112 G OP1 O N N 113 G OP2 O N N 114 G "O5'" O N N 115 G "C5'" C N N 116 G "C4'" C N R 117 G "O4'" O N N 118 G "C3'" C N S 119 G "O3'" O N N 120 G "C2'" C N R 121 G "O2'" O N N 122 G "C1'" C N R 123 G N9 N Y N 124 G C8 C Y N 125 G N7 N Y N 126 G C5 C Y N 127 G C6 C N N 128 G O6 O N N 129 G N1 N N N 130 G C2 C N N 131 G N2 N N N 132 G N3 N N N 133 G C4 C Y N 134 G HOP3 H N N 135 G HOP2 H N N 136 G "H5'" H N N 137 G "H5''" H N N 138 G "H4'" H N N 139 G "H3'" H N N 140 G "HO3'" H N N 141 G "H2'" H N N 142 G "HO2'" H N N 143 G "H1'" H N N 144 G H8 H N N 145 G H1 H N N 146 G H21 H N N 147 G H22 H N N 148 HOH O O N N 149 HOH H1 H N N 150 HOH H2 H N N 151 LCC "O5'" O N N 152 LCC "C5'" C N N 153 LCC "C4'" C N R 154 LCC "O4'" O N N 155 LCC "C1'" C N R 156 LCC N1 N N N 157 LCC C6 C N N 158 LCC C5 C N N 159 LCC C5M C N N 160 LCC C4 C N N 161 LCC N4 N N N 162 LCC N3 N N N 163 LCC C2 C N N 164 LCC O2 O N N 165 LCC "C3'" C N S 166 LCC "C2'" C N R 167 LCC "O2'" O N N 168 LCC "O3'" O N N 169 LCC "C6'" C N N 170 LCC P P N N 171 LCC O1P O N N 172 LCC O2P O N N 173 LCC OXT O N N 174 LCC "H5'1" H N N 175 LCC "H5'2" H N N 176 LCC "H1'" H N N 177 LCC H6 H N N 178 LCC H5M1 H N N 179 LCC H5M2 H N N 180 LCC H5M3 H N N 181 LCC H41 H N N 182 LCC H42 H N N 183 LCC "H3'" H N N 184 LCC "H2'1" H N N 185 LCC H3T H N N 186 LCC "H6'1" H N N 187 LCC "H6'2" H N N 188 LCC H1P H N N 189 LCC HXT H N N 190 LCG P P N N 191 LCG OP1 O N N 192 LCG "O5'" O N N 193 LCG "C5'" C N N 194 LCG "C3'" C N S 195 LCG "C6'" C N N 196 LCG N9 N Y N 197 LCG C8 C Y N 198 LCG C4 C Y N 199 LCG N7 N Y N 200 LCG C5 C Y N 201 LCG C6 C N N 202 LCG "C2'" C N R 203 LCG O6 O N N 204 LCG "C4'" C N R 205 LCG "C1'" C N R 206 LCG C2 C N N 207 LCG N1 N N N 208 LCG "O4'" O N N 209 LCG OP2 O N N 210 LCG N2 N N N 211 LCG N3 N N N 212 LCG "O2'" O N N 213 LCG "O3'" O N N 214 LCG OP3 O N N 215 LCG "H5'" H N N 216 LCG "H5''" H N N 217 LCG "H3'" H N N 218 LCG "H6'1" H N N 219 LCG "H6'2" H N N 220 LCG H8 H N N 221 LCG "H2'" H N N 222 LCG "H1'" H N N 223 LCG H1 H N N 224 LCG HOP2 H N N 225 LCG H21 H N N 226 LCG H22 H N N 227 LCG "HO3'" H N N 228 LCG HOP3 H N N 229 SR SR SR N N 230 U OP3 O N N 231 U P P N N 232 U OP1 O N N 233 U OP2 O N N 234 U "O5'" O N N 235 U "C5'" C N N 236 U "C4'" C N R 237 U "O4'" O N N 238 U "C3'" C N S 239 U "O3'" O N N 240 U "C2'" C N R 241 U "O2'" O N N 242 U "C1'" C N R 243 U N1 N N N 244 U C2 C N N 245 U O2 O N N 246 U N3 N N N 247 U C4 C N N 248 U O4 O N N 249 U C5 C N N 250 U C6 C N N 251 U HOP3 H N N 252 U HOP2 H N N 253 U "H5'" H N N 254 U "H5''" H N N 255 U "H4'" H N N 256 U "H3'" H N N 257 U "HO3'" H N N 258 U "H2'" H N N 259 U "HO2'" H N N 260 U "H1'" H N N 261 U H3 H N N 262 U H5 H N N 263 U H6 H N N 264 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5GP P O1P doub N N 1 5GP P O2P sing N N 2 5GP P O3P sing N N 3 5GP P "O5'" sing N N 4 5GP O2P HOP2 sing N N 5 5GP O3P HOP3 sing N N 6 5GP "O5'" "C5'" sing N N 7 5GP "C5'" "C4'" sing N N 8 5GP "C5'" "H5'1" sing N N 9 5GP "C5'" "H5'2" sing N N 10 5GP "C4'" "O4'" sing N N 11 5GP "C4'" "C3'" sing N N 12 5GP "C4'" "H4'" sing N N 13 5GP "O4'" "C1'" sing N N 14 5GP "C3'" "O3'" sing N N 15 5GP "C3'" "C2'" sing N N 16 5GP "C3'" "H3'" sing N N 17 5GP "O3'" "HO3'" sing N N 18 5GP "C2'" "O2'" sing N N 19 5GP "C2'" "C1'" sing N N 20 5GP "C2'" "H2'" sing N N 21 5GP "O2'" "HO2'" sing N N 22 5GP "C1'" N9 sing N N 23 5GP "C1'" "H1'" sing N N 24 5GP N9 C8 sing Y N 25 5GP N9 C4 sing Y N 26 5GP C8 N7 doub Y N 27 5GP C8 H8 sing N N 28 5GP N7 C5 sing Y N 29 5GP C5 C6 sing N N 30 5GP C5 C4 doub Y N 31 5GP C6 O6 doub N N 32 5GP C6 N1 sing N N 33 5GP N1 C2 sing N N 34 5GP N1 HN1 sing N N 35 5GP C2 N2 sing N N 36 5GP C2 N3 doub N N 37 5GP N2 HN21 sing N N 38 5GP N2 HN22 sing N N 39 5GP N3 C4 sing N N 40 A OP3 P sing N N 41 A OP3 HOP3 sing N N 42 A P OP1 doub N N 43 A P OP2 sing N N 44 A P "O5'" sing N N 45 A OP2 HOP2 sing N N 46 A "O5'" "C5'" sing N N 47 A "C5'" "C4'" sing N N 48 A "C5'" "H5'" sing N N 49 A "C5'" "H5''" sing N N 50 A "C4'" "O4'" sing N N 51 A "C4'" "C3'" sing N N 52 A "C4'" "H4'" sing N N 53 A "O4'" "C1'" sing N N 54 A "C3'" "O3'" sing N N 55 A "C3'" "C2'" sing N N 56 A "C3'" "H3'" sing N N 57 A "O3'" "HO3'" sing N N 58 A "C2'" "O2'" sing N N 59 A "C2'" "C1'" sing N N 60 A "C2'" "H2'" sing N N 61 A "O2'" "HO2'" sing N N 62 A "C1'" N9 sing N N 63 A "C1'" "H1'" sing N N 64 A N9 C8 sing Y N 65 A N9 C4 sing Y N 66 A C8 N7 doub Y N 67 A C8 H8 sing N N 68 A N7 C5 sing Y N 69 A C5 C6 sing Y N 70 A C5 C4 doub Y N 71 A C6 N6 sing N N 72 A C6 N1 doub Y N 73 A N6 H61 sing N N 74 A N6 H62 sing N N 75 A N1 C2 sing Y N 76 A C2 N3 doub Y N 77 A C2 H2 sing N N 78 A N3 C4 sing Y N 79 C OP3 P sing N N 80 C OP3 HOP3 sing N N 81 C P OP1 doub N N 82 C P OP2 sing N N 83 C P "O5'" sing N N 84 C OP2 HOP2 sing N N 85 C "O5'" "C5'" sing N N 86 C "C5'" "C4'" sing N N 87 C "C5'" "H5'" sing N N 88 C "C5'" "H5''" sing N N 89 C "C4'" "O4'" sing N N 90 C "C4'" "C3'" sing N N 91 C "C4'" "H4'" sing N N 92 C "O4'" "C1'" sing N N 93 C "C3'" "O3'" sing N N 94 C "C3'" "C2'" sing N N 95 C "C3'" "H3'" sing N N 96 C "O3'" "HO3'" sing N N 97 C "C2'" "O2'" sing N N 98 C "C2'" "C1'" sing N N 99 C "C2'" "H2'" sing N N 100 C "O2'" "HO2'" sing N N 101 C "C1'" N1 sing N N 102 C "C1'" "H1'" sing N N 103 C N1 C2 sing N N 104 C N1 C6 sing N N 105 C C2 O2 doub N N 106 C C2 N3 sing N N 107 C N3 C4 doub N N 108 C C4 N4 sing N N 109 C C4 C5 sing N N 110 C N4 H41 sing N N 111 C N4 H42 sing N N 112 C C5 C6 doub N N 113 C C5 H5 sing N N 114 C C6 H6 sing N N 115 G OP3 P sing N N 116 G OP3 HOP3 sing N N 117 G P OP1 doub N N 118 G P OP2 sing N N 119 G P "O5'" sing N N 120 G OP2 HOP2 sing N N 121 G "O5'" "C5'" sing N N 122 G "C5'" "C4'" sing N N 123 G "C5'" "H5'" sing N N 124 G "C5'" "H5''" sing N N 125 G "C4'" "O4'" sing N N 126 G "C4'" "C3'" sing N N 127 G "C4'" "H4'" sing N N 128 G "O4'" "C1'" sing N N 129 G "C3'" "O3'" sing N N 130 G "C3'" "C2'" sing N N 131 G "C3'" "H3'" sing N N 132 G "O3'" "HO3'" sing N N 133 G "C2'" "O2'" sing N N 134 G "C2'" "C1'" sing N N 135 G "C2'" "H2'" sing N N 136 G "O2'" "HO2'" sing N N 137 G "C1'" N9 sing N N 138 G "C1'" "H1'" sing N N 139 G N9 C8 sing Y N 140 G N9 C4 sing Y N 141 G C8 N7 doub Y N 142 G C8 H8 sing N N 143 G N7 C5 sing Y N 144 G C5 C6 sing N N 145 G C5 C4 doub Y N 146 G C6 O6 doub N N 147 G C6 N1 sing N N 148 G N1 C2 sing N N 149 G N1 H1 sing N N 150 G C2 N2 sing N N 151 G C2 N3 doub N N 152 G N2 H21 sing N N 153 G N2 H22 sing N N 154 G N3 C4 sing N N 155 HOH O H1 sing N N 156 HOH O H2 sing N N 157 LCC "O5'" "C5'" sing N N 158 LCC "O5'" P sing N N 159 LCC "C5'" "C4'" sing N N 160 LCC "C5'" "H5'1" sing N N 161 LCC "C5'" "H5'2" sing N N 162 LCC "C4'" "O4'" sing N N 163 LCC "C4'" "C3'" sing N N 164 LCC "C4'" "C6'" sing N N 165 LCC "O4'" "C1'" sing N N 166 LCC "C1'" N1 sing N N 167 LCC "C1'" "C2'" sing N N 168 LCC "C1'" "H1'" sing N N 169 LCC N1 C6 sing N N 170 LCC N1 C2 sing N N 171 LCC C6 C5 doub N N 172 LCC C6 H6 sing N N 173 LCC C5 C5M sing N N 174 LCC C5 C4 sing N N 175 LCC C5M H5M1 sing N N 176 LCC C5M H5M2 sing N N 177 LCC C5M H5M3 sing N N 178 LCC C4 N4 sing N N 179 LCC C4 N3 doub N N 180 LCC N4 H41 sing N N 181 LCC N4 H42 sing N N 182 LCC N3 C2 sing N N 183 LCC C2 O2 doub N N 184 LCC "C3'" "C2'" sing N N 185 LCC "C3'" "O3'" sing N N 186 LCC "C3'" "H3'" sing N N 187 LCC "C2'" "O2'" sing N N 188 LCC "C2'" "H2'1" sing N N 189 LCC "O2'" "C6'" sing N N 190 LCC "O3'" H3T sing N N 191 LCC "C6'" "H6'1" sing N N 192 LCC "C6'" "H6'2" sing N N 193 LCC P O1P sing N N 194 LCC P O2P doub N N 195 LCC P OXT sing N N 196 LCC O1P H1P sing N N 197 LCC OXT HXT sing N N 198 LCG P OP1 doub N N 199 LCG P "O5'" sing N N 200 LCG P OP2 sing N N 201 LCG P OP3 sing N N 202 LCG "O5'" "C5'" sing N N 203 LCG "C5'" "C4'" sing N N 204 LCG "C5'" "H5'" sing N N 205 LCG "C5'" "H5''" sing N N 206 LCG "C3'" "C2'" sing N N 207 LCG "C3'" "C4'" sing N N 208 LCG "C3'" "O3'" sing N N 209 LCG "C3'" "H3'" sing N N 210 LCG "C6'" "C4'" sing N N 211 LCG "C6'" "O2'" sing N N 212 LCG "C6'" "H6'1" sing N N 213 LCG "C6'" "H6'2" sing N N 214 LCG N9 C8 sing Y N 215 LCG N9 C4 sing Y N 216 LCG N9 "C1'" sing N N 217 LCG C8 N7 doub Y N 218 LCG C8 H8 sing N N 219 LCG C4 C5 doub Y N 220 LCG C4 N3 sing N N 221 LCG N7 C5 sing Y N 222 LCG C5 C6 sing N N 223 LCG C6 O6 doub N N 224 LCG C6 N1 sing N N 225 LCG "C2'" "C1'" sing N N 226 LCG "C2'" "O2'" sing N N 227 LCG "C2'" "H2'" sing N N 228 LCG "C4'" "O4'" sing N N 229 LCG "C1'" "O4'" sing N N 230 LCG "C1'" "H1'" sing N N 231 LCG C2 N1 sing N N 232 LCG C2 N2 sing N N 233 LCG C2 N3 doub N N 234 LCG N1 H1 sing N N 235 LCG OP2 HOP2 sing N N 236 LCG N2 H21 sing N N 237 LCG N2 H22 sing N N 238 LCG "O3'" "HO3'" sing N N 239 LCG OP3 HOP3 sing N N 240 U OP3 P sing N N 241 U OP3 HOP3 sing N N 242 U P OP1 doub N N 243 U P OP2 sing N N 244 U P "O5'" sing N N 245 U OP2 HOP2 sing N N 246 U "O5'" "C5'" sing N N 247 U "C5'" "C4'" sing N N 248 U "C5'" "H5'" sing N N 249 U "C5'" "H5''" sing N N 250 U "C4'" "O4'" sing N N 251 U "C4'" "C3'" sing N N 252 U "C4'" "H4'" sing N N 253 U "O4'" "C1'" sing N N 254 U "C3'" "O3'" sing N N 255 U "C3'" "C2'" sing N N 256 U "C3'" "H3'" sing N N 257 U "O3'" "HO3'" sing N N 258 U "C2'" "O2'" sing N N 259 U "C2'" "C1'" sing N N 260 U "C2'" "H2'" sing N N 261 U "O2'" "HO2'" sing N N 262 U "C1'" N1 sing N N 263 U "C1'" "H1'" sing N N 264 U N1 C2 sing N N 265 U N1 C6 sing N N 266 U C2 O2 doub N N 267 U C2 N3 sing N N 268 U N3 C4 sing N N 269 U N3 H3 sing N N 270 U C4 O4 doub N N 271 U C4 C5 sing N N 272 U C5 C6 doub N N 273 U C5 H5 sing N N 274 U C6 H6 sing N N 275 # _ndb_struct_conf_na.entry_id 6CAB _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A LCG 4 1_555 B C 13 1_555 -0.287 -0.468 0.047 5.180 -11.881 -1.120 1 A_LCG4:C13_B A 4 ? B 13 ? 19 1 1 A A 5 1_555 B U 12 1_555 -0.400 -0.104 -0.085 1.842 -14.185 4.976 2 A_A5:U12_B A 5 ? B 12 ? 20 1 1 A C 6 1_555 B G 11 1_555 -0.066 -0.011 0.495 3.840 -15.899 5.986 3 A_C6:G11_B A 6 ? B 11 ? 19 1 1 A U 7 1_555 B A 10 1_555 0.072 -0.143 -0.074 -6.172 -20.845 10.291 4 A_U7:A10_B A 7 ? B 10 ? 20 1 1 A U 8 1_555 B A 9 1_555 0.566 -0.282 0.329 -4.255 -18.597 5.279 5 A_U8:A9_B A 8 ? B 9 ? 20 1 1 A A 9 1_555 B U 8 1_555 -0.311 -0.265 0.265 -2.549 -12.016 2.887 6 A_A9:U8_B A 9 ? B 8 ? 20 1 1 A A 10 1_555 B U 7 1_555 -0.267 -0.124 0.071 11.112 -20.542 5.898 7 A_A10:U7_B A 10 ? B 7 ? 20 1 1 A G 11 1_555 B C 6 1_555 0.347 0.183 0.530 -10.985 -23.525 9.541 8 A_G11:C6_B A 11 ? B 6 ? 19 1 1 A U 12 1_555 B A 5 1_555 0.159 -0.091 0.038 -1.271 -13.542 1.390 9 A_U12:A5_B A 12 ? B 5 ? 20 1 1 A C 13 1_555 B LCG 4 1_555 0.277 -0.466 0.256 -4.931 -9.577 0.485 10 A_C13:LCG4_B A 13 ? B 4 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A LCG 4 1_555 B C 13 1_555 A A 5 1_555 B U 12 1_555 -0.052 -1.377 3.318 1.464 8.649 31.583 -3.873 0.334 2.847 15.520 -2.626 32.749 1 AA_LCG4A5:U12C13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 A A 5 1_555 B U 12 1_555 A C 6 1_555 B G 11 1_555 0.147 -1.400 3.226 -6.170 6.012 33.855 -3.196 -1.130 2.873 10.121 10.387 34.903 2 AA_A5C6:G11U12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 A C 6 1_555 B G 11 1_555 A U 7 1_555 B A 10 1_555 -0.423 -1.593 3.429 2.852 10.269 28.768 -4.964 1.341 2.663 19.830 -5.508 30.640 3 AA_C6U7:A10G11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 A U 7 1_555 B A 10 1_555 A U 8 1_555 B A 9 1_555 -0.222 -0.797 3.341 -4.125 8.766 34.539 -2.551 -0.231 3.060 14.416 6.783 35.832 4 AA_U7U8:A9A10_BB A 7 ? B 10 ? A 8 ? B 9 ? 1 A U 8 1_555 B A 9 1_555 A A 9 1_555 B U 8 1_555 -0.023 -1.456 2.788 -1.052 15.565 26.202 -5.069 -0.112 1.677 31.077 2.099 30.424 5 AA_U8A9:U8A9_BB A 8 ? B 9 ? A 9 ? B 8 ? 1 A A 9 1_555 B U 8 1_555 A A 10 1_555 B U 7 1_555 0.182 -1.080 2.889 4.892 6.241 33.499 -2.663 0.347 2.650 10.644 -8.343 34.398 6 AA_A9A10:U7U8_BB A 9 ? B 8 ? A 10 ? B 7 ? 1 A A 10 1_555 B U 7 1_555 A G 11 1_555 B C 6 1_555 0.854 -1.451 3.862 0.563 12.742 30.657 -4.903 -1.392 3.049 22.896 -1.012 33.146 7 AA_A10G11:C6U7_BB A 10 ? B 7 ? A 11 ? B 6 ? 1 A G 11 1_555 B C 6 1_555 A U 12 1_555 B A 5 1_555 -0.473 -1.397 3.010 3.557 4.751 31.144 -3.329 1.443 2.704 8.749 -6.550 31.690 8 AA_G11U12:A5C6_BB A 11 ? B 6 ? A 12 ? B 5 ? 1 A U 12 1_555 B A 5 1_555 A C 13 1_555 B LCG 4 1_555 0.271 -1.398 3.277 -1.629 7.522 32.710 -3.596 -0.724 2.877 13.130 2.844 33.579 9 AA_U12C13:LCG4A5_BB A 12 ? B 5 ? A 13 ? B 4 ? # _pdbx_audit_support.funding_organization 'Howard Hughes Medical Institute (HHMI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5DHC _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 6CAB _atom_sites.fract_transf_matrix[1][1] 0.020531 _atom_sites.fract_transf_matrix[1][2] 0.011854 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023707 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012410 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P SR # loop_