HEADER RNA 29-JAN-18 6CAB TITLE RNA-DGMP COMPLEX WITH SR ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG) COMPND 3 P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3'); COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS RNA, ACTIVATED MONOMER EXPDTA X-RAY DIFFRACTION AUTHOR W.ZHANG,J.W.SZOSTAK REVDAT 5 16-OCT-24 6CAB 1 REMARK HET HETNAM FORMUL REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 04-OCT-23 6CAB 1 LINK REVDAT 3 20-NOV-19 6CAB 1 REMARK REVDAT 2 31-OCT-18 6CAB 1 JRNL REVDAT 1 30-MAY-18 6CAB 0 JRNL AUTH W.ZHANG,T.WALTON,L.LI,J.W.SZOSTAK JRNL TITL CRYSTALLOGRAPHIC OBSERVATION OF NONENZYMATIC RNA PRIMER JRNL TITL 2 EXTENSION. JRNL REF ELIFE V. 7 2018 JRNL REFN ESSN 2050-084X JRNL PMID 29851379 JRNL DOI 10.7554/ELIFE.36422 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 3729 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 176 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 238 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE SET COUNT : 11 REMARK 3 BIN FREE R VALUE : 0.4010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 598 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.491 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.316 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.302 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.392 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 762 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 308 ; 0.043 ; 0.025 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1164 ; 2.668 ; 2.222 REMARK 3 BOND ANGLES OTHERS (DEGREES): 772 ; 4.212 ; 3.297 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 142 ; 0.167 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 356 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 104 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 759 ; 6.306 ; 8.141 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 755 ; 6.125 ; 8.095 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1158 ; 8.801 ;12.142 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1130 ;10.495 ;78.508 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1131 ;10.573 ;78.634 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6CAB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000232409. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 99 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4047 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.960 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5DHC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% V/V (+/-)-2-METHYL-2,4 REMARK 280 -PENTANEDIOL, 0.040 M SODIUM CACODYLATE TRIHYDRATE PH 7.0, 0.012 REMARK 280 M SPERMINE TETRAHYDROCHLORIDE, 0.080 M SODIUM CHLORIDE, 0.020 M REMARK 280 STRONTIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 SR SR A 104 LIES ON A SPECIAL POSITION. REMARK 375 SR SR B 104 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 203 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LCC A 1 C3' - O3' - P ANGL. DEV. = 25.1 DEGREES REMARK 500 LCC A 2 O3' - P - O5' ANGL. DEV. = -23.9 DEGREES REMARK 500 LCC A 2 C3' - O3' - P ANGL. DEV. = 11.1 DEGREES REMARK 500 LCC A 3 O3' - P - O5' ANGL. DEV. = -17.2 DEGREES REMARK 500 LCG A 4 O3' - P - O5' ANGL. DEV. = -13.2 DEGREES REMARK 500 A A 5 O3' - P - OP2 ANGL. DEV. = 12.1 DEGREES REMARK 500 LCC B 1 C3' - O3' - P ANGL. DEV. = 28.2 DEGREES REMARK 500 LCC B 2 O3' - P - O5' ANGL. DEV. = 21.4 DEGREES REMARK 500 LCC B 2 C3' - O3' - P ANGL. DEV. = 8.5 DEGREES REMARK 500 LCC B 3 C3' - O3' - P ANGL. DEV. = 9.3 DEGREES REMARK 500 LCG B 4 O3' - P - O5' ANGL. DEV. = 33.5 DEGREES REMARK 500 A B 5 O3' - P - OP1 ANGL. DEV. = -20.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR A 103 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 14 O6 REMARK 620 2 5GP A 101 N7 64.0 REMARK 620 3 5GP A 101 O6 74.3 63.3 REMARK 620 4 HOH B 201 O 148.0 84.6 86.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR A 104 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 5GP A 101 O3' REMARK 620 2 5GP A 101 O3' 0.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR B 103 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 202 O REMARK 620 2 G B 14 O6 136.9 REMARK 620 3 5GP B 102 O6 68.6 69.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR B 104 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 5GP B 102 O3' REMARK 620 2 5GP B 102 O3' 0.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5GP A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5GP A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5GP B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5GP B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SR B 104 DBREF 6CAB A 1 14 PDB 6CAB 6CAB 1 14 DBREF 6CAB B 1 14 PDB 6CAB 6CAB 1 14 SEQRES 1 A 14 LCC LCC LCC LCG A C U U A A G U C SEQRES 2 A 14 G SEQRES 1 B 14 LCC LCC LCC LCG A C U U A A G U C SEQRES 2 B 14 G HET LCC A 1 19 HET LCC A 2 22 HET LCC A 3 22 HET LCG A 4 24 HET LCC B 1 19 HET LCC B 2 22 HET LCC B 3 22 HET LCG B 4 24 HET 5GP A 101 24 HET 5GP A 102 24 HET SR A 103 1 HET SR A 104 1 HET 5GP B 101 24 HET 5GP B 102 24 HET SR B 103 1 HET SR B 104 1 HETNAM LCC [(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5- HETNAM 2 LCC DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCC PHOSPHATE HETNAM LCG [(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5- HETNAM 2 LCG DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCG PHOSPHATE HETNAM 5GP GUANOSINE-5'-MONOPHOSPHATE HETNAM SR STRONTIUM ION FORMUL 1 LCC 6(C11 H16 N3 O8 P) FORMUL 1 LCG 2(C11 H14 N5 O8 P) FORMUL 3 5GP 4(C10 H14 N5 O8 P) FORMUL 5 SR 4(SR 2+) FORMUL 11 HOH *8(H2 O) LINK O3' LCC A 1 P LCC A 2 1555 1555 1.59 LINK O3' LCC A 2 P LCC A 3 1555 1555 1.64 LINK O3' LCC A 3 P LCG A 4 1555 1555 1.63 LINK O3' LCG A 4 P A A 5 1555 1555 1.64 LINK O3' LCC B 1 P LCC B 2 1555 1555 1.62 LINK O3' LCC B 2 P LCC B 3 1555 1555 1.67 LINK O3' LCC B 3 P LCG B 4 1555 1555 1.67 LINK O3' LCG B 4 P A B 5 1555 1555 1.68 LINK O6 G A 14 SR SR A 103 1555 1555 2.86 LINK N7 5GP A 101 SR SR A 103 1555 1555 2.93 LINK O6 5GP A 101 SR SR A 103 1555 1555 2.95 LINK O3' 5GP A 101 SR SR A 104 1555 1555 2.58 LINK O3' 5GP A 101 SR SR A 104 1555 2545 2.55 LINK SR SR A 103 O HOH B 201 1555 1555 2.81 LINK O HOH A 202 SR SR B 103 1555 1555 2.77 LINK O6 G B 14 SR SR B 103 1555 1555 3.00 LINK O6 5GP B 102 SR SR B 103 1555 1555 2.92 LINK O3' 5GP B 102 SR SR B 104 1555 1555 2.38 LINK O3' 5GP B 102 SR SR B 104 1555 2545 2.38 SITE 1 AC1 4 G A 14 SR A 103 SR A 104 5GP B 101 SITE 1 AC2 3 HOH A 202 G B 14 5GP B 102 SITE 1 AC3 3 G A 14 5GP A 101 HOH B 201 SITE 1 AC4 1 5GP A 101 SITE 1 AC5 3 G A 14 5GP A 101 HOH B 201 SITE 1 AC6 4 5GP A 102 G B 14 SR B 103 SR B 104 SITE 1 AC7 3 HOH A 202 G B 14 5GP B 102 SITE 1 AC8 1 5GP B 102 CRYST1 48.707 48.707 80.580 90.00 90.00 120.00 P 3 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020531 0.011854 0.000000 0.00000 SCALE2 0.000000 0.023707 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012410 0.00000 HETATM 1 O5' LCC A 1 32.113 5.210 83.902 1.00 91.26 O HETATM 2 C5' LCC A 1 31.173 4.703 84.852 1.00 95.01 C HETATM 3 C4' LCC A 1 30.049 4.042 84.036 1.00 94.33 C HETATM 4 O4' LCC A 1 30.436 3.558 82.749 1.00 92.06 O HETATM 5 C1' LCC A 1 29.652 2.329 82.585 1.00 80.79 C HETATM 6 N1 LCC A 1 30.573 1.147 82.509 1.00 75.02 N HETATM 7 C6 LCC A 1 31.982 1.344 82.592 1.00 66.85 C HETATM 8 C5 LCC A 1 32.826 0.255 82.447 1.00 72.09 C HETATM 9 C5M LCC A 1 34.217 0.415 82.545 1.00 76.50 C HETATM 10 C4 LCC A 1 32.226 -0.987 82.197 1.00 70.54 C HETATM 11 N4 LCC A 1 33.002 -2.051 82.056 1.00 76.35 N HETATM 12 N3 LCC A 1 30.894 -1.141 82.110 1.00 64.26 N HETATM 13 C2 LCC A 1 30.070 -0.094 82.264 1.00 68.13 C HETATM 14 O2 LCC A 1 28.859 -0.303 82.179 1.00 69.79 O HETATM 15 C3' LCC A 1 29.597 2.788 84.703 1.00 88.63 C HETATM 16 C2' LCC A 1 28.670 2.398 83.692 1.00 79.47 C HETATM 17 O2' LCC A 1 27.830 3.626 83.553 1.00 81.58 O HETATM 18 O3' LCC A 1 29.037 2.793 85.816 1.00 96.15 O HETATM 19 C6' LCC A 1 28.723 4.829 83.838 1.00 89.89 C HETATM 20 O5' LCC A 2 28.341 1.557 87.106 1.00 70.76 O HETATM 21 C5' LCC A 2 27.176 0.986 87.484 1.00 77.67 C HETATM 22 C4' LCC A 2 26.513 -0.070 86.586 1.00 77.86 C HETATM 23 O4' LCC A 2 27.009 -0.382 85.283 1.00 68.64 O HETATM 24 C1' LCC A 2 26.642 -1.771 85.093 1.00 69.42 C HETATM 25 N1 LCC A 2 27.886 -2.564 84.990 1.00 71.77 N HETATM 26 C6 LCC A 2 29.110 -1.900 85.180 1.00 60.92 C HETATM 27 C5 LCC A 2 30.273 -2.608 85.048 1.00 66.62 C HETATM 28 C5M LCC A 2 31.497 -1.934 85.251 1.00 66.42 C HETATM 29 C4 LCC A 2 30.168 -3.968 84.728 1.00 63.65 C HETATM 30 N4 LCC A 2 31.278 -4.677 84.587 1.00 62.81 N HETATM 31 N3 LCC A 2 28.993 -4.575 84.566 1.00 66.66 N HETATM 32 C2 LCC A 2 27.845 -3.899 84.681 1.00 71.47 C HETATM 33 O2 LCC A 2 26.795 -4.533 84.474 1.00 60.44 O HETATM 34 C3' LCC A 2 26.587 -1.423 87.245 1.00 74.70 C HETATM 35 C2' LCC A 2 25.818 -2.108 86.271 1.00 74.51 C HETATM 36 O2' LCC A 2 24.561 -1.305 86.283 1.00 85.15 O HETATM 37 O3' LCC A 2 25.981 -1.440 88.477 1.00 67.95 O HETATM 38 C6' LCC A 2 24.973 0.150 86.436 1.00 79.48 C HETATM 39 P LCC A 2 29.245 2.575 87.372 1.00 76.75 P HETATM 40 O1P LCC A 2 28.832 3.571 88.393 1.00 98.58 O HETATM 41 O2P LCC A 2 30.529 1.838 87.517 1.00 87.15 O HETATM 42 O5' LCC A 3 26.452 -3.274 89.843 1.00 64.13 O HETATM 43 C5' LCC A 3 25.118 -3.745 90.047 1.00 57.80 C HETATM 44 C4' LCC A 3 25.086 -5.084 89.277 1.00 67.44 C HETATM 45 O4' LCC A 3 25.772 -5.231 87.986 1.00 61.95 O HETATM 46 C1' LCC A 3 26.063 -6.640 87.966 1.00 61.38 C HETATM 47 N1 LCC A 3 27.498 -6.811 87.883 1.00 60.62 N HETATM 48 C6 LCC A 3 28.367 -5.707 88.061 1.00 63.76 C HETATM 49 C5 LCC A 3 29.736 -5.908 87.905 1.00 69.17 C HETATM 50 C5M LCC A 3 30.618 -4.852 88.083 1.00 68.67 C HETATM 51 C4 LCC A 3 30.176 -7.201 87.555 1.00 75.49 C HETATM 52 N4 LCC A 3 31.477 -7.413 87.405 1.00 68.51 N HETATM 53 N3 LCC A 3 29.304 -8.220 87.381 1.00 76.11 N HETATM 54 C2 LCC A 3 27.981 -8.027 87.527 1.00 67.16 C HETATM 55 O2 LCC A 3 27.253 -9.000 87.348 1.00 62.32 O HETATM 56 C3' LCC A 3 25.699 -6.165 90.095 1.00 68.90 C HETATM 57 C2' LCC A 3 25.431 -7.218 89.174 1.00 61.91 C HETATM 58 O2' LCC A 3 23.952 -7.100 89.064 1.00 59.38 O HETATM 59 O3' LCC A 3 25.038 -6.328 91.417 1.00 71.01 O HETATM 60 C6' LCC A 3 23.636 -5.633 89.103 1.00 63.55 C HETATM 61 P LCC A 3 26.621 -1.532 89.986 1.00 69.62 P HETATM 62 O1P LCC A 3 25.761 -0.699 90.881 1.00 63.89 O HETATM 63 O2P LCC A 3 28.082 -1.193 89.934 1.00 75.84 O HETATM 64 P LCG A 4 25.870 -6.487 92.808 1.00 67.06 P HETATM 65 OP1 LCG A 4 24.969 -6.105 93.907 1.00 72.03 O HETATM 66 O5' LCG A 4 26.173 -8.095 92.472 1.00 70.19 O HETATM 67 C5' LCG A 4 25.241 -9.113 92.931 1.00 68.69 C HETATM 68 C3' LCG A 4 26.936 -10.834 93.162 1.00 74.23 C HETATM 69 C6' LCG A 4 24.999 -11.800 92.367 1.00 95.19 C HETATM 70 N9 LCG A 4 28.602 -10.592 90.735 1.00 63.52 N HETATM 71 C8 LCG A 4 28.861 -9.275 90.745 1.00 60.61 C HETATM 72 C4 LCG A 4 29.652 -11.257 90.307 1.00 65.88 C HETATM 73 N7 LCG A 4 30.104 -9.100 90.356 1.00 66.10 N HETATM 74 C5 LCG A 4 30.581 -10.322 90.069 1.00 71.13 C HETATM 75 C6 LCG A 4 31.756 -10.690 89.612 1.00 66.66 C HETATM 76 C2' LCG A 4 27.333 -12.032 92.320 1.00 64.99 C HETATM 77 O6 LCG A 4 32.603 -9.840 89.395 1.00 67.96 O HETATM 78 C4' LCG A 4 25.846 -10.431 92.356 1.00 75.04 C HETATM 79 C1' LCG A 4 27.384 -11.348 91.025 1.00 64.66 C HETATM 80 C2 LCG A 4 31.037 -13.011 89.670 1.00 70.42 C HETATM 81 N1 LCG A 4 32.024 -12.035 89.404 1.00 69.15 N HETATM 82 O4' LCG A 4 26.352 -10.347 91.032 1.00 69.97 O HETATM 83 OP2 LCG A 4 27.168 -5.823 92.581 1.00 70.93 O HETATM 84 N2 LCG A 4 31.275 -14.311 89.471 1.00 61.96 N HETATM 85 N3 LCG A 4 29.843 -12.586 90.114 1.00 64.42 N HETATM 86 O2' LCG A 4 26.168 -12.846 92.399 1.00 71.09 O HETATM 87 O3' LCG A 4 26.345 -11.210 94.435 1.00 65.81 O