HEADER IMMUNE SYSTEM 03-FEB-18 6CBP TITLE CRYSTAL STRUCTURE OF THE SINGLE CHAIN VARIABLE FRAGMENT OF THE DH270.6 TITLE 2 BNAB IN COMPLEX WITH THE MAN9-V3 GLYCOPEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAN9-V3 GLYCOPEPTIDE; COMPND 3 CHAIN: P; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DH270.6 SINGLE CHAIN VARIABLE FRAGMENT; COMPND 7 CHAIN: A; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 4 ORGANISM_TAXID: 11676; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS FAB FRAGMENT, HIV-1, ANTIBODY, GLYCOPEPTIDE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.FERA,S.C.HARRISON REVDAT 8 04-OCT-23 6CBP 1 HETSYN LINK REVDAT 7 29-JUL-20 6CBP 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE ATOM REVDAT 6 18-DEC-19 6CBP 1 REMARK REVDAT 5 17-APR-19 6CBP 1 JRNL REVDAT 4 04-APR-18 6CBP 1 JRNL REVDAT 3 28-MAR-18 6CBP 1 JRNL REVDAT 2 28-FEB-18 6CBP 1 REMARK REVDAT 1 21-FEB-18 6CBP 0 JRNL AUTH D.FERA,M.S.LEE,K.WIEHE,R.R.MEYERHOFF,A.PIAI,M.BONSIGNORI, JRNL AUTH 2 B.AUSSEDAT,W.E.WALKOWICZ,T.TON,J.O.ZHOU,S.DANISHEFSKY, JRNL AUTH 3 B.F.HAYNES,S.C.HARRISON JRNL TITL HIV ENVELOPE V3 REGION MIMIC EMBODIES KEY FEATURES OF A JRNL TITL 2 BROADLY NEUTRALIZING ANTIBODY LINEAGE EPITOPE. JRNL REF NAT COMMUN V. 9 1111 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29549260 JRNL DOI 10.1038/S41467-018-03565-6 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 15873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 60.1640 - 3.9431 0.92 2607 127 0.1918 0.2243 REMARK 3 2 3.9431 - 3.1298 0.94 2500 131 0.1918 0.2429 REMARK 3 3 3.1298 - 2.7342 0.95 2462 162 0.2175 0.3235 REMARK 3 4 2.7342 - 2.4842 0.96 2514 134 0.2597 0.3039 REMARK 3 5 2.4842 - 2.3061 0.97 2515 119 0.3001 0.3643 REMARK 3 6 2.3061 - 2.1702 0.96 2462 140 0.2957 0.3593 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2226 REMARK 3 ANGLE : 0.934 3020 REMARK 3 CHIRALITY : 0.063 354 REMARK 3 PLANARITY : 0.004 368 REMARK 3 DIHEDRAL : 16.992 835 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 12.8754 -21.8135 -16.5555 REMARK 3 T TENSOR REMARK 3 T11: 0.2233 T22: 0.1902 REMARK 3 T33: 0.2447 T12: -0.0254 REMARK 3 T13: -0.0286 T23: 0.0367 REMARK 3 L TENSOR REMARK 3 L11: 1.4609 L22: 0.7317 REMARK 3 L33: 1.2211 L12: 0.0542 REMARK 3 L13: -0.3764 L23: -0.0153 REMARK 3 S TENSOR REMARK 3 S11: -0.0552 S12: 0.0467 S13: 0.2240 REMARK 3 S21: -0.0297 S22: 0.0423 S23: 0.1460 REMARK 3 S31: 0.0391 S32: -0.1192 S33: 0.0162 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CBP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1000232505. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97925 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(220) SIDE REMARK 200 BOUNCE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15878 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 60.141 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5TQA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG8000, 10 MM CHES, 1 M SODIUM REMARK 280 CHLORIDE, PH 9.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.41750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.20875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 96.62625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.41750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 96.62625 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 32.20875 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 129 REMARK 465 SER A 130 REMARK 465 GLY A 131 REMARK 465 GLY A 132 REMARK 465 GLY A 133 REMARK 465 GLY A 134 REMARK 465 SER A 135 REMARK 465 GLY A 136 REMARK 465 GLY A 137 REMARK 465 GLY A 138 REMARK 465 GLY A 139 REMARK 465 SER A 140 REMARK 465 GLY A 141 REMARK 465 GLY A 142 REMARK 465 THR A 143 REMARK 465 SER A 144 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 62 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 MAN D 1 C1 MAN E 1 1.99 REMARK 500 OG1 THR A 69 NH1 ARG A 84 2.03 REMARK 500 NH2 ARG A 205 OD2 ASP A 226 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG P 304 148.79 65.47 REMARK 500 GLN A 65 -59.32 -15.53 REMARK 500 PRO A 112 44.04 -77.66 REMARK 500 SER A 126 -79.40 -108.53 REMARK 500 ASP A 170 -97.29 -108.00 REMARK 500 HIS A 174 140.18 63.95 REMARK 500 VAL A 195 -59.83 72.36 REMARK 500 LEU A 222 109.69 -59.76 REMARK 500 ALA A 228 -175.95 -170.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG C 1 REMARK 610 MAN D 1 REMARK 610 MAN E 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6CBJ RELATED DB: PDB REMARK 900 CLONAL LINEAGE MEMBER IN COMPLEX WITH GLYCAN DBREF 6CBP P 293 304 UNP Q74448 Q74448_9HIV1 24 35 DBREF 6CBP P 320 336 UNP Q74448 Q74448_9HIV1 48 64 DBREF 6CBP A 1 257 PDB 6CBP 6CBP 1 257 SEQADV 6CBP PRO P 305 UNP Q74448 LINKER SEQRES 1 P 30 GLU ILE ASN CYS THR ARG PRO ASN ASN ASN THR ARG PRO SEQRES 2 P 30 GLY GLU ILE ILE GLY ASP ILE ARG GLN ALA HIS CYS ASN SEQRES 3 P 30 ILE SER ARG ALA SEQRES 1 A 256 GLN VAL GLN LEU VAL GLN SER GLY ALA GLN MET LYS ASN SEQRES 2 A 256 PRO GLY ALA SER VAL LYS VAL SER CYS ALA PRO SER GLY SEQRES 3 A 256 TYR THR PHE THR ASP PHE TYR ILE HIS TRP LEU ARG GLN SEQRES 4 A 256 ALA PRO GLY GLN GLY LEU GLN TRP MET GLY TRP MET ASN SEQRES 5 A 256 PRO GLN THR GLY ARG THR ASN THR ALA ARG ASN PHE GLN SEQRES 6 A 256 GLY ARG VAL THR MET THR ARG ASP THR SER ILE GLY THR SEQRES 7 A 256 ALA TYR MET GLU LEU ARG SER LEU THR SER ASP ASP THR SEQRES 8 A 256 ALA ILE TYR TYR CYS THR THR GLY GLY TRP ILE SER LEU SEQRES 9 A 256 TYR TYR ASP SER SER TYR TYR PRO ASN PHE ASP HIS TRP SEQRES 10 A 256 GLY GLN GLY THR LEU LEU THR VAL SER GLY GLY SER GLY SEQRES 11 A 256 GLY GLY GLY SER GLY GLY GLY GLY SER GLY GLY THR SER SEQRES 12 A 256 ALA LEU THR GLN PRO ALA SER VAL SER GLY SER PRO GLY SEQRES 13 A 256 GLN SER ILE THR ILE SER CYS THR GLY THR LYS TYR ASP SEQRES 14 A 256 VAL GLY SER HIS ASP LEU VAL SER TRP TYR GLN GLN TYR SEQRES 15 A 256 PRO GLY LYS VAL PRO LYS TYR MET ILE TYR GLU VAL ASN SEQRES 16 A 256 LYS ARG PRO SER GLY VAL SER ASN ARG PHE SER GLY SER SEQRES 17 A 256 LYS SER GLY ASN THR ALA SER LEU THR ILE SER GLY LEU SEQRES 18 A 256 ARG ALA GLU ASP GLU ALA ASP TYR TYR CYS CYS SER PHE SEQRES 19 A 256 GLY GLY SER ALA THR VAL VAL CYS GLY GLY GLY THR LYS SEQRES 20 A 256 VAL THR VAL HIS HIS HIS HIS HIS HIS HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET MAN C 6 11 HET MAN D 1 11 HET MAN D 2 11 HET MAN D 3 11 HET MAN E 1 11 HET MAN E 2 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 4 MAN 8(C6 H12 O6) FORMUL 7 HOH *95(H2 O) HELIX 1 AA1 THR A 28 THR A 30 5 3 HELIX 2 AA2 ARG A 62 GLN A 65 5 4 HELIX 3 AA3 THR A 87 THR A 91 5 5 HELIX 4 AA4 ARG A 223 GLU A 227 5 5 SHEET 1 AA1 2 ILE P 294 THR P 297 0 SHEET 2 AA1 2 HIS P 330 ILE P 333 -1 O ASN P 332 N ASN P 295 SHEET 1 AA2 4 GLN A 3 GLN A 6 0 SHEET 2 AA2 4 VAL A 18 SER A 25 -1 O ALA A 23 N VAL A 5 SHEET 3 AA2 4 THR A 78 LEU A 83 -1 O MET A 81 N VAL A 20 SHEET 4 AA2 4 VAL A 68 ASP A 73 -1 N THR A 71 O TYR A 80 SHEET 1 AA3 6 GLN A 10 LYS A 12 0 SHEET 2 AA3 6 THR A 121 VAL A 125 1 O THR A 124 N GLN A 10 SHEET 3 AA3 6 ALA A 92 TRP A 101 -1 N ALA A 92 O LEU A 123 SHEET 4 AA3 6 PHE A 32 GLN A 39 -1 N GLN A 39 O ILE A 93 SHEET 5 AA3 6 LEU A 45 MET A 51 -1 O MET A 48 N TRP A 36 SHEET 6 AA3 6 THR A 58 THR A 60 -1 O ASN A 59 N TRP A 50 SHEET 1 AA4 5 SER A 151 GLY A 154 0 SHEET 2 AA4 5 THR A 247 VAL A 251 1 O LYS A 248 N VAL A 152 SHEET 3 AA4 5 ASP A 229 GLY A 237 -1 N TYR A 230 O THR A 247 SHEET 4 AA4 5 VAL A 177 GLN A 182 -1 N GLN A 182 O ASP A 229 SHEET 5 AA4 5 LYS A 189 ILE A 192 -1 O MET A 191 N TRP A 179 SHEET 1 AA5 4 SER A 151 GLY A 154 0 SHEET 2 AA5 4 THR A 247 VAL A 251 1 O LYS A 248 N VAL A 152 SHEET 3 AA5 4 ASP A 229 GLY A 237 -1 N TYR A 230 O THR A 247 SHEET 4 AA5 4 THR A 240 CYS A 243 -1 O THR A 240 N GLY A 236 SHEET 1 AA6 3 ILE A 160 THR A 165 0 SHEET 2 AA6 3 THR A 214 ILE A 219 -1 O ALA A 215 N CYS A 164 SHEET 3 AA6 3 PHE A 206 SER A 211 -1 N SER A 211 O THR A 214 SSBOND 1 CYS P 296 CYS P 331 1555 1555 2.04 SSBOND 2 CYS A 22 CYS A 96 1555 1555 2.04 SSBOND 3 CYS A 164 CYS A 232 1555 1555 2.03 SSBOND 4 CYS A 233 CYS A 243 1555 1555 2.04 LINK ND2 ASN P 301 C1 NAG B 1 1555 1555 1.46 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.44 LINK O2 MAN C 4 C1 MAN C 5 1555 1555 1.44 LINK O2 MAN C 5 C1 MAN C 6 1555 1555 1.44 LINK O3 MAN D 1 C1 MAN D 2 1555 1555 1.44 LINK O2 MAN D 2 C1 MAN D 3 1555 1555 1.44 LINK O2 MAN E 1 C1 MAN E 2 1555 1555 1.44 CRYST1 68.005 68.005 128.835 90.00 90.00 90.00 P 41 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014705 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014705 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007762 0.00000