HEADER REPLICATION 05-FEB-18 6CBS TITLE DNAG PRIMASE C-TERMINAL DOMAIN COMPLEX WITH SSB C-TERMINAL PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA PRIMASE, SINGLE-STRANDED DNA-BINDING PROTEIN CHIMERA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DNAG C-TERMINAL DOMAIN (UNP RESIDUES 434-581), LINKER COMPND 5 PEPTIDE, SSB C-TERMINAL PEPTIDE (UNP RESIDUES 130-139); COMPND 6 SYNONYM: DNAGC-SSB CHIMERA; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DNAG, DNAP, PARB, B3066, JW3038, SSB_1, BUE81_14300, SOURCE 6 ERS085374_00666; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PAL1402 KEYWDS PRIMASE, DNAG, SINGLE-STRAND DNA-BINDING PROTEIN, SSB, COMPLEX, KEYWDS 2 REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR A.J.OAKLEY,A.T.Y.LO REVDAT 3 04-OCT-23 6CBS 1 LINK REVDAT 2 01-JAN-20 6CBS 1 REMARK REVDAT 1 06-FEB-19 6CBS 0 JRNL AUTH A.J.OAKLEY,A.T.Y.LO JRNL TITL DNAG PRIMASE C-TERMINAL DOMAIN COMPLEX WITH SSB C-TERMINAL JRNL TITL 2 PEPTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 30076 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 1556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.5850 - 4.1133 0.99 2958 157 0.1871 0.2147 REMARK 3 2 4.1133 - 3.2652 0.67 1897 107 0.1741 0.1970 REMARK 3 3 3.2652 - 2.8526 1.00 2798 169 0.1901 0.2393 REMARK 3 4 2.8526 - 2.5918 1.00 2786 151 0.1848 0.1968 REMARK 3 5 2.5918 - 2.4061 0.99 2738 151 0.1868 0.2489 REMARK 3 6 2.4061 - 2.2642 0.99 2617 154 0.1947 0.1983 REMARK 3 7 2.2642 - 2.1508 0.99 2087 110 0.1893 0.2174 REMARK 3 8 2.1508 - 2.0572 0.98 2690 128 0.1952 0.2389 REMARK 3 9 2.0572 - 1.9780 0.97 2671 166 0.2009 0.2608 REMARK 3 10 1.9780 - 1.9097 0.97 2637 133 0.2429 0.2630 REMARK 3 11 1.9097 - 1.8500 0.96 2641 130 0.2726 0.3262 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2268 REMARK 3 ANGLE : 0.641 3079 REMARK 3 CHIRALITY : 0.036 365 REMARK 3 PLANARITY : 0.004 407 REMARK 3 DIHEDRAL : 5.253 1654 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 445 THROUGH 530 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3150 41.8802 1.9275 REMARK 3 T TENSOR REMARK 3 T11: 0.1598 T22: 0.1321 REMARK 3 T33: 0.1236 T12: 0.0136 REMARK 3 T13: 0.0456 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.8465 L22: 2.8673 REMARK 3 L33: 1.6311 L12: -0.0966 REMARK 3 L13: -0.2992 L23: 0.4185 REMARK 3 S TENSOR REMARK 3 S11: -0.1507 S12: 0.0114 S13: -0.2098 REMARK 3 S21: -0.1619 S22: 0.0412 S23: -0.1859 REMARK 3 S31: 0.1966 S32: 0.1120 S33: 0.0553 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 531 THROUGH 561 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8959 42.1706 5.8976 REMARK 3 T TENSOR REMARK 3 T11: 0.1841 T22: 0.1506 REMARK 3 T33: 0.1339 T12: -0.0295 REMARK 3 T13: -0.0054 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 4.2042 L22: 2.0925 REMARK 3 L33: 0.3846 L12: 2.7455 REMARK 3 L13: 0.5453 L23: 0.1823 REMARK 3 S TENSOR REMARK 3 S11: 0.0127 S12: 0.1744 S13: 0.0226 REMARK 3 S21: -0.0761 S22: 0.0689 S23: 0.0721 REMARK 3 S31: 0.1485 S32: -0.0202 S33: 0.0168 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 562 THROUGH 599 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.6238 40.4004 7.4616 REMARK 3 T TENSOR REMARK 3 T11: 0.2231 T22: 0.1775 REMARK 3 T33: 0.0926 T12: -0.0814 REMARK 3 T13: -0.0195 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 3.3928 L22: 1.3484 REMARK 3 L33: 1.0082 L12: 0.1721 REMARK 3 L13: -1.8514 L23: -0.4793 REMARK 3 S TENSOR REMARK 3 S11: 0.0881 S12: 0.0307 S13: 0.0879 REMARK 3 S21: -0.1243 S22: 0.0419 S23: 0.1223 REMARK 3 S31: -0.1285 S32: 0.0842 S33: -0.0396 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 445 THROUGH 494 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4788 98.1244 17.9536 REMARK 3 T TENSOR REMARK 3 T11: 0.1705 T22: 0.1495 REMARK 3 T33: 0.1685 T12: -0.0148 REMARK 3 T13: 0.0251 T23: -0.0670 REMARK 3 L TENSOR REMARK 3 L11: 2.0160 L22: 1.5961 REMARK 3 L33: 1.4456 L12: 0.0338 REMARK 3 L13: -0.0068 L23: -0.1442 REMARK 3 S TENSOR REMARK 3 S11: -0.0977 S12: 0.1737 S13: -0.2523 REMARK 3 S21: -0.1828 S22: 0.0366 S23: -0.0913 REMARK 3 S31: 0.2361 S32: 0.0905 S33: 0.0479 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 495 THROUGH 530 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7374 101.6363 12.9810 REMARK 3 T TENSOR REMARK 3 T11: 0.1929 T22: 0.2796 REMARK 3 T33: 0.2903 T12: -0.0202 REMARK 3 T13: 0.1087 T23: -0.0520 REMARK 3 L TENSOR REMARK 3 L11: 1.0127 L22: 1.6050 REMARK 3 L33: 2.0170 L12: -0.2439 REMARK 3 L13: -0.1501 L23: -0.1050 REMARK 3 S TENSOR REMARK 3 S11: -0.1134 S12: 0.2700 S13: -0.1495 REMARK 3 S21: -0.3797 S22: 0.0014 S23: -0.6748 REMARK 3 S31: 0.1654 S32: 0.2654 S33: 0.0304 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 531 THROUGH 559 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6397 100.3991 20.3522 REMARK 3 T TENSOR REMARK 3 T11: 0.1317 T22: 0.1688 REMARK 3 T33: 0.1264 T12: -0.0352 REMARK 3 T13: 0.0243 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 4.1161 L22: 4.4565 REMARK 3 L33: 0.7277 L12: 3.8314 REMARK 3 L13: 0.4969 L23: 0.3745 REMARK 3 S TENSOR REMARK 3 S11: -0.1154 S12: 0.2578 S13: 0.1919 REMARK 3 S21: -0.0551 S22: 0.1675 S23: 0.2472 REMARK 3 S31: 0.0799 S32: -0.1056 S33: -0.0094 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 560 THROUGH 564 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.2346 87.4081 20.5724 REMARK 3 T TENSOR REMARK 3 T11: 0.5665 T22: 0.3237 REMARK 3 T33: 0.7755 T12: -0.1927 REMARK 3 T13: -0.0717 T23: -0.2361 REMARK 3 L TENSOR REMARK 3 L11: 2.1457 L22: 0.6195 REMARK 3 L33: 7.0085 L12: 0.4973 REMARK 3 L13: 1.1254 L23: -0.5884 REMARK 3 S TENSOR REMARK 3 S11: -0.2272 S12: 0.4006 S13: 0.0520 REMARK 3 S21: -0.8389 S22: 0.1543 S23: 0.8394 REMARK 3 S31: 0.3545 S32: -0.3843 S33: 0.3261 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 565 THROUGH 579 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.5577 96.9253 27.0386 REMARK 3 T TENSOR REMARK 3 T11: 0.3121 T22: 0.2551 REMARK 3 T33: 0.1806 T12: -0.1473 REMARK 3 T13: 0.0400 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 5.0337 L22: 6.6000 REMARK 3 L33: 4.2136 L12: -0.8325 REMARK 3 L13: -0.7680 L23: 0.5153 REMARK 3 S TENSOR REMARK 3 S11: -0.0307 S12: 0.0479 S13: -0.2019 REMARK 3 S21: 0.2753 S22: -0.3285 S23: 0.3264 REMARK 3 S31: -0.2988 S32: 0.4547 S33: 0.3733 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 580 THROUGH 599 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0720 103.4450 8.4354 REMARK 3 T TENSOR REMARK 3 T11: 0.3522 T22: 0.2981 REMARK 3 T33: 0.2076 T12: -0.0677 REMARK 3 T13: -0.0514 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 5.0403 L22: 2.9355 REMARK 3 L33: 5.1598 L12: -1.7212 REMARK 3 L13: -2.9255 L23: 2.0666 REMARK 3 S TENSOR REMARK 3 S11: 0.2952 S12: 0.6880 S13: 0.2824 REMARK 3 S21: -0.4720 S22: 0.1453 S23: -0.2914 REMARK 3 S31: -0.2290 S32: -0.1222 S33: -0.4564 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CBS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1000232427. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953715 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 6.2.6 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30129 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.46300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 9.4.09 REMARK 200 STARTING MODEL: PDB ENTRY 6CBT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7.5% W/V PEG3000, 15 MM ZINC ACETATE, REMARK 280 100 MM SODIUM ACETATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 34.94750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.60100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.94750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.60100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 434 REMARK 465 ALA A 435 REMARK 465 GLU A 436 REMARK 465 SER A 437 REMARK 465 GLY A 438 REMARK 465 VAL A 439 REMARK 465 SER A 440 REMARK 465 ARG A 441 REMARK 465 PRO A 442 REMARK 465 VAL A 443 REMARK 465 PRO A 444 REMARK 465 LYS A 581 REMARK 465 THR A 582 REMARK 465 ARG A 583 REMARK 465 GLU A 584 REMARK 465 SER A 585 REMARK 465 GLY A 586 REMARK 465 SER A 587 REMARK 465 ILE A 588 REMARK 465 GLY A 589 REMARK 465 SER A 590 REMARK 465 MET A 591 REMARK 465 ASP A 592 REMARK 465 PHE A 593 REMARK 465 ASP A 594 REMARK 465 ALA B 434 REMARK 465 ALA B 435 REMARK 465 GLU B 436 REMARK 465 SER B 437 REMARK 465 GLY B 438 REMARK 465 VAL B 439 REMARK 465 SER B 440 REMARK 465 ARG B 441 REMARK 465 PRO B 442 REMARK 465 VAL B 443 REMARK 465 PRO B 444 REMARK 465 LYS B 581 REMARK 465 THR B 582 REMARK 465 ARG B 583 REMARK 465 GLU B 584 REMARK 465 SER B 585 REMARK 465 GLY B 586 REMARK 465 SER B 587 REMARK 465 ILE B 588 REMARK 465 GLY B 589 REMARK 465 SER B 590 REMARK 465 MET B 591 REMARK 465 ASP B 592 REMARK 465 PHE B 593 REMARK 465 ASP B 594 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 445 CG CD OE1 NE2 REMARK 470 GLU A 472 CG CD OE1 OE2 REMARK 470 ARG A 508 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 577 CG CD OE1 OE2 REMARK 470 LEU A 578 CG CD1 CD2 REMARK 470 LYS A 580 CG CD CE NZ REMARK 470 GLN B 445 CG CD OE1 NE2 REMARK 470 LYS B 447 CD CE NZ REMARK 470 ARG B 508 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 559 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 578 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 726 O HOH B 806 1.83 REMARK 500 O HOH B 793 O HOH B 829 1.84 REMARK 500 O HOH A 839 O HOH A 853 1.88 REMARK 500 O HOH B 703 O HOH B 705 1.97 REMARK 500 O HOH A 722 O HOH A 863 1.98 REMARK 500 O HOH B 772 O HOH B 885 1.99 REMARK 500 NZ LYS B 518 O HOH B 701 2.02 REMARK 500 OE1 GLU B 487 O HOH B 702 2.02 REMARK 500 OE1 GLU B 548 O HOH B 703 2.05 REMARK 500 O HOH B 761 O HOH B 825 2.07 REMARK 500 OE1 GLU B 567 O HOH B 704 2.07 REMARK 500 O HOH B 880 O HOH B 894 2.07 REMARK 500 O HOH A 892 O HOH A 895 2.10 REMARK 500 OE2 GLU A 552 O HOH A 701 2.11 REMARK 500 O HOH B 872 O HOH B 895 2.11 REMARK 500 OE2 GLU B 552 O HOH B 705 2.13 REMARK 500 O HOH A 736 O HOH A 863 2.15 REMARK 500 O HOH A 894 O HOH A 896 2.18 REMARK 500 O ACY B 604 O HOH B 706 2.18 REMARK 500 O HOH A 867 O HOH A 889 2.18 REMARK 500 O HOH B 717 O HOH B 832 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 875 O HOH B 918 3446 1.93 REMARK 500 O HOH B 839 O HOH B 853 4466 1.98 REMARK 500 O HOH B 878 O HOH B 893 4466 2.09 REMARK 500 O HOH B 765 O HOH B 765 2575 2.15 REMARK 500 O HOH A 881 O HOH B 868 3445 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 598 36.07 -84.22 REMARK 500 PRO B 598 33.22 -85.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 894 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A 895 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A 896 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH B 916 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B 917 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B 918 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH B 919 DISTANCE = 6.40 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 603 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 476 OE1 REMARK 620 2 HOH A 725 O 88.7 REMARK 620 3 HOH A 787 O 93.5 85.9 REMARK 620 4 HOH A 845 O 98.3 172.9 94.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 506 NE2 REMARK 620 2 HIS A 561 NE2 140.1 REMARK 620 3 ACY A 604 OXT 110.5 84.9 REMARK 620 4 ACY A 604 O 86.3 71.0 57.5 REMARK 620 5 HOH A 844 O 117.7 99.0 87.3 143.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 527 OD2 REMARK 620 2 ASP A 537 OD1 69.4 REMARK 620 3 ASP A 537 OD2 62.6 6.8 REMARK 620 4 HIS A 541 NE2 62.7 7.5 3.0 REMARK 620 5 ACY A 605 O 70.6 8.6 11.5 9.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 603 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 773 O REMARK 620 2 GLU B 472 OE1 105.8 REMARK 620 3 HIS B 561 ND1 97.6 40.6 REMARK 620 4 ACY B 604 O 122.2 108.1 80.4 REMARK 620 5 ACY B 604 OXT 80.6 158.4 118.9 53.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 506 NE2 REMARK 620 2 GLU B 566 OE1 77.2 REMARK 620 3 HOH B 769 O 79.2 142.6 REMARK 620 4 HOH B 841 O 170.0 112.4 91.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 527 OD2 REMARK 620 2 ASP B 537 OD1 67.4 REMARK 620 3 ASP B 537 OD2 60.5 6.8 REMARK 620 4 HIS B 541 NE2 60.5 7.4 2.9 REMARK 620 5 ACY B 605 O 67.9 8.8 11.4 9.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY B 605 DBREF 6CBS A 434 581 UNP P0ABS5 DNAG_ECOLI 434 581 DBREF1 6CBS A 590 599 UNP A0A0K3FKM0_ECOLX DBREF2 6CBS A A0A0K3FKM0 130 139 DBREF 6CBS B 434 581 UNP P0ABS5 DNAG_ECOLI 434 581 DBREF1 6CBS B 590 599 UNP A0A0K3FKM0_ECOLX DBREF2 6CBS B A0A0K3FKM0 130 139 SEQADV 6CBS THR A 582 UNP P0ABS5 LINKER SEQADV 6CBS ARG A 583 UNP P0ABS5 LINKER SEQADV 6CBS GLU A 584 UNP P0ABS5 LINKER SEQADV 6CBS SER A 585 UNP P0ABS5 LINKER SEQADV 6CBS GLY A 586 UNP P0ABS5 LINKER SEQADV 6CBS SER A 587 UNP P0ABS5 LINKER SEQADV 6CBS ILE A 588 UNP P0ABS5 LINKER SEQADV 6CBS GLY A 589 UNP P0ABS5 LINKER SEQADV 6CBS THR B 582 UNP P0ABS5 LINKER SEQADV 6CBS ARG B 583 UNP P0ABS5 LINKER SEQADV 6CBS GLU B 584 UNP P0ABS5 LINKER SEQADV 6CBS SER B 585 UNP P0ABS5 LINKER SEQADV 6CBS GLY B 586 UNP P0ABS5 LINKER SEQADV 6CBS SER B 587 UNP P0ABS5 LINKER SEQADV 6CBS ILE B 588 UNP P0ABS5 LINKER SEQADV 6CBS GLY B 589 UNP P0ABS5 LINKER SEQRES 1 A 166 ALA ALA GLU SER GLY VAL SER ARG PRO VAL PRO GLN LEU SEQRES 2 A 166 LYS ARG THR THR MET ARG ILE LEU ILE GLY LEU LEU VAL SEQRES 3 A 166 GLN ASN PRO GLU LEU ALA THR LEU VAL PRO PRO LEU GLU SEQRES 4 A 166 ASN LEU ASP GLU ASN LYS LEU PRO GLY LEU GLY LEU PHE SEQRES 5 A 166 ARG GLU LEU VAL ASN THR CYS LEU SER GLN PRO GLY LEU SEQRES 6 A 166 THR THR GLY GLN LEU LEU GLU HIS TYR ARG GLY THR ASN SEQRES 7 A 166 ASN ALA ALA THR LEU GLU LYS LEU SER MET TRP ASP ASP SEQRES 8 A 166 ILE ALA ASP LYS ASN ILE ALA GLU GLN THR PHE THR ASP SEQRES 9 A 166 SER LEU ASN HIS MET PHE ASP SER LEU LEU GLU LEU ARG SEQRES 10 A 166 GLN GLU GLU LEU ILE ALA ARG GLU ARG THR HIS GLY LEU SEQRES 11 A 166 SER ASN GLU GLU ARG LEU GLU LEU TRP THR LEU ASN GLN SEQRES 12 A 166 GLU LEU ALA LYS LYS THR ARG GLU SER GLY SER ILE GLY SEQRES 13 A 166 SER MET ASP PHE ASP ASP ASP ILE PRO PHE SEQRES 1 B 166 ALA ALA GLU SER GLY VAL SER ARG PRO VAL PRO GLN LEU SEQRES 2 B 166 LYS ARG THR THR MET ARG ILE LEU ILE GLY LEU LEU VAL SEQRES 3 B 166 GLN ASN PRO GLU LEU ALA THR LEU VAL PRO PRO LEU GLU SEQRES 4 B 166 ASN LEU ASP GLU ASN LYS LEU PRO GLY LEU GLY LEU PHE SEQRES 5 B 166 ARG GLU LEU VAL ASN THR CYS LEU SER GLN PRO GLY LEU SEQRES 6 B 166 THR THR GLY GLN LEU LEU GLU HIS TYR ARG GLY THR ASN SEQRES 7 B 166 ASN ALA ALA THR LEU GLU LYS LEU SER MET TRP ASP ASP SEQRES 8 B 166 ILE ALA ASP LYS ASN ILE ALA GLU GLN THR PHE THR ASP SEQRES 9 B 166 SER LEU ASN HIS MET PHE ASP SER LEU LEU GLU LEU ARG SEQRES 10 B 166 GLN GLU GLU LEU ILE ALA ARG GLU ARG THR HIS GLY LEU SEQRES 11 B 166 SER ASN GLU GLU ARG LEU GLU LEU TRP THR LEU ASN GLN SEQRES 12 B 166 GLU LEU ALA LYS LYS THR ARG GLU SER GLY SER ILE GLY SEQRES 13 B 166 SER MET ASP PHE ASP ASP ASP ILE PRO PHE HET ZN A 601 1 HET ZN A 602 1 HET ZN A 603 1 HET ACY A 604 4 HET ACY A 605 4 HET ZN B 601 1 HET ZN B 602 1 HET ZN B 603 1 HET ACY B 604 4 HET ACY B 605 4 HETNAM ZN ZINC ION HETNAM ACY ACETIC ACID FORMUL 3 ZN 6(ZN 2+) FORMUL 6 ACY 4(C2 H4 O2) FORMUL 13 HOH *415(H2 O) HELIX 1 AA1 THR A 449 ASN A 461 1 13 HELIX 2 AA2 PRO A 462 VAL A 468 5 7 HELIX 3 AA3 ASP A 475 LEU A 479 5 5 HELIX 4 AA4 GLY A 481 GLN A 495 1 15 HELIX 5 AA5 THR A 499 TYR A 507 1 9 HELIX 6 AA6 ASN A 512 MET A 521 1 10 HELIX 7 AA7 TRP A 522 ALA A 526 5 5 HELIX 8 AA8 ILE A 530 GLY A 562 1 33 HELIX 9 AA9 SER A 564 LYS A 580 1 17 HELIX 10 AB1 THR B 449 ASN B 461 1 13 HELIX 11 AB2 PRO B 462 VAL B 468 5 7 HELIX 12 AB3 ASP B 475 LEU B 479 5 5 HELIX 13 AB4 GLY B 481 GLN B 495 1 15 HELIX 14 AB5 THR B 499 HIS B 506 1 8 HELIX 15 AB6 ASN B 512 MET B 521 1 10 HELIX 16 AB7 TRP B 522 ALA B 526 5 5 HELIX 17 AB8 ILE B 530 HIS B 561 1 32 HELIX 18 AB9 SER B 564 LYS B 580 1 17 LINK OE1 GLU A 476 ZN ZN A 603 1555 1555 2.16 LINK NE2 HIS A 506 ZN ZN A 601 1555 1555 2.04 LINK OD2 ASP A 527 ZN ZN A 602 1555 2565 1.98 LINK OD1 ASP A 537 ZN ZN A 602 1555 1555 2.03 LINK OD2 ASP A 537 ZN ZN A 602 1555 1555 2.40 LINK NE2 HIS A 541 ZN ZN A 602 1555 1555 2.04 LINK NE2 HIS A 561 ZN ZN A 601 1555 4455 2.03 LINK ZN ZN A 601 OXT ACY A 604 1555 1555 2.29 LINK ZN ZN A 601 O ACY A 604 1555 1555 2.34 LINK ZN ZN A 601 O HOH A 844 1555 1555 2.64 LINK ZN ZN A 602 O ACY A 605 1555 1555 1.98 LINK ZN ZN A 603 O HOH A 725 1555 1555 2.23 LINK ZN ZN A 603 O HOH A 787 1555 1555 2.43 LINK ZN ZN A 603 O HOH A 845 1555 1555 2.37 LINK O HOH A 773 ZN ZN B 603 3456 1555 2.01 LINK OE1 GLU B 472 ZN ZN B 603 1555 1555 1.97 LINK NE2 HIS B 506 ZN ZN B 602 1555 1555 2.11 LINK OD2 ASP B 527 ZN ZN B 601 1555 2575 1.98 LINK OD1 ASP B 537 ZN ZN B 601 1555 1555 2.03 LINK OD2 ASP B 537 ZN ZN B 601 1555 1555 2.47 LINK NE2 HIS B 541 ZN ZN B 601 1555 1555 2.04 LINK ND1 HIS B 561 ZN ZN B 603 1555 4466 2.06 LINK OE1 GLU B 566 ZN ZN B 602 1555 4466 2.27 LINK ZN ZN B 601 O ACY B 605 1555 1555 1.91 LINK ZN ZN B 602 O HOH B 769 1555 1555 2.33 LINK ZN ZN B 602 O HOH B 841 1555 4566 2.48 LINK ZN ZN B 603 O ACY B 604 1555 1555 2.15 LINK ZN ZN B 603 OXT ACY B 604 1555 1555 2.69 SITE 1 AC1 4 HIS A 506 HIS A 561 ACY A 604 HOH A 844 SITE 1 AC2 4 ASP A 527 ASP A 537 HIS A 541 ACY A 605 SITE 1 AC3 4 GLU A 476 HOH A 725 HOH A 787 HOH A 845 SITE 1 AC4 4 THR A 491 HIS A 506 HIS A 561 ZN A 601 SITE 1 AC5 8 ASP A 527 ASN A 529 ASP A 537 HIS A 541 SITE 2 AC5 8 ZN A 602 HOH A 760 HOH A 803 HOH A 807 SITE 1 AC6 4 ASP B 527 ASP B 537 HIS B 541 ACY B 605 SITE 1 AC7 5 HIS B 506 GLU B 566 HOH B 722 HOH B 769 SITE 2 AC7 5 HOH B 841 SITE 1 AC8 4 HOH A 773 GLU B 472 HIS B 561 ACY B 604 SITE 1 AC9 9 HOH A 773 VAL B 468 PRO B 469 PRO B 470 SITE 2 AC9 9 GLU B 472 LEU B 493 HIS B 561 ZN B 603 SITE 3 AC9 9 HOH B 706 SITE 1 AD1 7 ASP B 527 ASN B 529 ASP B 537 HIS B 541 SITE 2 AD1 7 ZN B 601 HOH B 774 HOH B 794 CRYST1 69.895 115.202 45.817 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014307 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008680 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021826 0.00000