HEADER IMMUNE SYSTEM 05-FEB-18 6CBV TITLE CRYSTAL STRUCTURE OF BRIL BOUND TO AN AFFINITY MATURED SYNTHETIC TITLE 2 ANTIBODY. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAVY CHAIN, FAB FRAGMENT; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LIGHT CHAIN, FAB FRAGMENT; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: BRIL; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: CYTOCHROME B-562; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PRH2.2; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PRH2.2; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 17 ORGANISM_TAXID: 562; SOURCE 18 GENE: CYBC; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PHFT2 KEYWDS 4-HELIX BUNDLE, FUSION PROTEIN, SYNTHETIC ANTIBODY, FAB FRAGMENT, KEYWDS 2 FUSION PROTEIN IN COMPLEX WITH FAB, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.MUKHERJEE,B.SKROBEK,A.A.KOSSIAKOFF REVDAT 6 04-OCT-23 6CBV 1 REMARK REVDAT 5 19-AUG-20 6CBV 1 JRNL REVDAT 4 01-JAN-20 6CBV 1 REMARK REVDAT 3 20-FEB-19 6CBV 1 TITLE REVDAT 2 13-FEB-19 6CBV 1 HEADER KEYWDS REVDAT 1 06-FEB-19 6CBV 0 JRNL AUTH S.MUKHERJEE,S.K.ERRAMILLI,M.AMMIRATI,F.J.D.ALVAREZ, JRNL AUTH 2 K.F.FENNELL,M.D.PURDY,B.M.SKROBEK,K.RADZIWON,J.COUKOS, JRNL AUTH 3 Y.KANG,P.DUTKA,X.GAO,X.QIU,M.YEAGER,H.ERIC XU,S.HAN, JRNL AUTH 4 A.A.KOSSIAKOFF JRNL TITL SYNTHETIC ANTIBODIES AGAINST BRIL AS UNIVERSAL FIDUCIAL JRNL TITL 2 MARKS FOR SINGLE-PARTICLE CRYOEM STRUCTURE DETERMINATION OF JRNL TITL 3 MEMBRANE PROTEINS. JRNL REF NAT COMMUN V. 11 1598 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32221310 JRNL DOI 10.1038/S41467-020-15363-0 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 55218 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 2647 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8478 - 4.9707 0.99 2889 139 0.1697 0.2128 REMARK 3 2 4.9707 - 3.9556 1.00 2874 139 0.1581 0.1859 REMARK 3 3 3.9556 - 3.4586 0.99 2866 129 0.1746 0.1826 REMARK 3 4 3.4586 - 3.1438 1.00 2855 133 0.1918 0.2157 REMARK 3 5 3.1438 - 2.9192 1.00 2895 135 0.2004 0.2324 REMARK 3 6 2.9192 - 2.7475 1.00 2854 133 0.2077 0.2536 REMARK 3 7 2.7475 - 2.6103 1.00 2895 103 0.2148 0.2511 REMARK 3 8 2.6103 - 2.4969 1.00 2841 148 0.2170 0.2679 REMARK 3 9 2.4969 - 2.4009 1.00 2885 136 0.2247 0.2493 REMARK 3 10 2.4009 - 2.3182 1.00 2789 166 0.2339 0.2738 REMARK 3 11 2.3182 - 2.2458 0.99 2848 152 0.2352 0.2738 REMARK 3 12 2.2458 - 2.1817 0.99 2856 159 0.2365 0.2420 REMARK 3 13 2.1817 - 2.1243 0.99 2837 162 0.2489 0.2691 REMARK 3 14 2.1243 - 2.0725 0.99 2827 146 0.2553 0.2629 REMARK 3 15 2.0725 - 2.0255 0.99 2815 146 0.2675 0.2881 REMARK 3 16 2.0255 - 1.9824 0.99 2820 167 0.2718 0.2755 REMARK 3 17 1.9824 - 1.9428 0.96 2737 146 0.2909 0.3503 REMARK 3 18 1.9428 - 1.9062 0.86 2433 139 0.3216 0.3200 REMARK 3 19 1.9062 - 1.8721 0.61 1755 69 0.3411 0.3105 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4292 REMARK 3 ANGLE : 0.722 5847 REMARK 3 CHIRALITY : 0.046 656 REMARK 3 PLANARITY : 0.004 747 REMARK 3 DIHEDRAL : 11.609 2608 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 3 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4504 123.4530 -5.4272 REMARK 3 T TENSOR REMARK 3 T11: 0.3644 T22: 0.3306 REMARK 3 T33: 0.3254 T12: -0.0030 REMARK 3 T13: -0.0253 T23: 0.0717 REMARK 3 L TENSOR REMARK 3 L11: 4.3135 L22: 2.6400 REMARK 3 L33: 3.1427 L12: 0.7218 REMARK 3 L13: -1.4399 L23: -1.3759 REMARK 3 S TENSOR REMARK 3 S11: -0.1554 S12: 0.1614 S13: 0.2049 REMARK 3 S21: 0.1505 S22: 0.1985 S23: 0.1455 REMARK 3 S31: -0.0079 S32: 0.0156 S33: -0.0519 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 124 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0163 102.4744 20.0120 REMARK 3 T TENSOR REMARK 3 T11: 0.4374 T22: 0.2884 REMARK 3 T33: 0.2849 T12: 0.0180 REMARK 3 T13: 0.0205 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 6.3275 L22: 1.1933 REMARK 3 L33: 4.5875 L12: 0.4915 REMARK 3 L13: -0.2336 L23: 1.2113 REMARK 3 S TENSOR REMARK 3 S11: 0.0585 S12: -0.6123 S13: -0.5716 REMARK 3 S21: 0.4180 S22: -0.0767 S23: -0.3464 REMARK 3 S31: 0.6746 S32: 0.2465 S33: -0.0438 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 149 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5278 103.5121 19.0745 REMARK 3 T TENSOR REMARK 3 T11: 0.3731 T22: 0.3031 REMARK 3 T33: 0.3309 T12: -0.0279 REMARK 3 T13: 0.0018 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 7.1063 L22: 4.6802 REMARK 3 L33: 4.7073 L12: -1.5820 REMARK 3 L13: 1.8727 L23: -0.6834 REMARK 3 S TENSOR REMARK 3 S11: 0.2158 S12: -0.3861 S13: 0.0347 REMARK 3 S21: 0.4257 S22: 0.0702 S23: -0.3465 REMARK 3 S31: -0.0119 S32: 0.2131 S33: -0.2846 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 2 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5506 100.1681 -17.1208 REMARK 3 T TENSOR REMARK 3 T11: 0.8840 T22: 0.5685 REMARK 3 T33: 0.4109 T12: -0.1155 REMARK 3 T13: -0.0043 T23: -0.0449 REMARK 3 L TENSOR REMARK 3 L11: 2.6437 L22: 8.4890 REMARK 3 L33: 7.6630 L12: -0.4076 REMARK 3 L13: 1.0448 L23: -5.7629 REMARK 3 S TENSOR REMARK 3 S11: -0.3684 S12: 0.3545 S13: -0.3592 REMARK 3 S21: -0.9596 S22: 0.5661 S23: 0.5814 REMARK 3 S31: 1.0027 S32: -0.3296 S33: -0.0610 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 27 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.9497 106.5221 -15.0948 REMARK 3 T TENSOR REMARK 3 T11: 0.5298 T22: 0.3585 REMARK 3 T33: 0.2826 T12: 0.0465 REMARK 3 T13: 0.0673 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 4.5720 L22: 7.4394 REMARK 3 L33: 3.5760 L12: 0.2825 REMARK 3 L13: -1.0210 L23: -1.0009 REMARK 3 S TENSOR REMARK 3 S11: -0.2828 S12: 0.2984 S13: -0.3021 REMARK 3 S21: -0.5636 S22: 0.0469 S23: -0.2671 REMARK 3 S31: 0.9883 S32: 0.5838 S33: 0.2297 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 77 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8773 107.9403 -12.7649 REMARK 3 T TENSOR REMARK 3 T11: 0.5547 T22: 0.4324 REMARK 3 T33: 0.3314 T12: -0.0325 REMARK 3 T13: -0.0101 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 2.0551 L22: 9.7109 REMARK 3 L33: 3.5767 L12: 0.2104 REMARK 3 L13: -0.8785 L23: -4.2641 REMARK 3 S TENSOR REMARK 3 S11: -0.2740 S12: 0.2339 S13: -0.2288 REMARK 3 S21: -0.0558 S22: 0.2075 S23: 0.1701 REMARK 3 S31: 0.4882 S32: 0.2175 S33: 0.0579 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 104 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6996 88.9317 -2.0460 REMARK 3 T TENSOR REMARK 3 T11: 1.0235 T22: 0.4002 REMARK 3 T33: 0.5529 T12: 0.0855 REMARK 3 T13: 0.1138 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 2.8593 L22: 7.0392 REMARK 3 L33: 4.7487 L12: 4.4964 REMARK 3 L13: -3.7275 L23: -5.7907 REMARK 3 S TENSOR REMARK 3 S11: -0.6914 S12: 0.2933 S13: -0.4966 REMARK 3 S21: -0.5808 S22: 0.8876 S23: -0.0067 REMARK 3 S31: 1.0373 S32: -0.3021 S33: -0.1860 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 116 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7920 92.2170 16.3062 REMARK 3 T TENSOR REMARK 3 T11: 0.4600 T22: 0.2556 REMARK 3 T33: 0.3239 T12: -0.0151 REMARK 3 T13: -0.0129 T23: 0.1014 REMARK 3 L TENSOR REMARK 3 L11: 6.0960 L22: 5.7271 REMARK 3 L33: 7.2492 L12: -2.7144 REMARK 3 L13: -4.3815 L23: 4.2116 REMARK 3 S TENSOR REMARK 3 S11: 0.0420 S12: -0.0104 S13: -0.3368 REMARK 3 S21: -0.1133 S22: -0.0277 S23: -0.0382 REMARK 3 S31: 0.2194 S32: -0.3926 S33: 0.0043 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 153 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1734 92.3868 8.4362 REMARK 3 T TENSOR REMARK 3 T11: 0.5239 T22: 0.2760 REMARK 3 T33: 0.3798 T12: -0.0124 REMARK 3 T13: -0.0310 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 3.7636 L22: 3.2776 REMARK 3 L33: 8.0227 L12: -3.3911 REMARK 3 L13: -2.5782 L23: 1.3895 REMARK 3 S TENSOR REMARK 3 S11: 0.2924 S12: -0.1630 S13: 0.1711 REMARK 3 S21: -0.2289 S22: 0.0230 S23: -0.1274 REMARK 3 S31: 0.4802 S32: -0.2186 S33: -0.3688 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 177 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8063 88.2168 18.8523 REMARK 3 T TENSOR REMARK 3 T11: 0.4402 T22: 0.3031 REMARK 3 T33: 0.3611 T12: -0.1017 REMARK 3 T13: 0.0061 T23: 0.0413 REMARK 3 L TENSOR REMARK 3 L11: 6.0323 L22: 7.8151 REMARK 3 L33: 3.9423 L12: -3.3300 REMARK 3 L13: -2.6849 L23: -0.1420 REMARK 3 S TENSOR REMARK 3 S11: -0.4069 S12: -0.0638 S13: -0.6213 REMARK 3 S21: 0.2263 S22: 0.1434 S23: 0.4179 REMARK 3 S31: 0.8193 S32: -0.4048 S33: 0.2890 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8047 123.9742 -38.5057 REMARK 3 T TENSOR REMARK 3 T11: 1.0558 T22: 1.0942 REMARK 3 T33: 0.5426 T12: -0.3671 REMARK 3 T13: -0.1720 T23: 0.1255 REMARK 3 L TENSOR REMARK 3 L11: 8.7535 L22: 5.8791 REMARK 3 L33: 7.7515 L12: -6.0024 REMARK 3 L13: -1.6685 L23: 0.3638 REMARK 3 S TENSOR REMARK 3 S11: 0.4359 S12: 1.2905 S13: -0.0791 REMARK 3 S21: -2.3493 S22: -0.0644 S23: 0.7206 REMARK 3 S31: 0.4940 S32: 0.2578 S33: -0.1963 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8163 119.8238 -32.1760 REMARK 3 T TENSOR REMARK 3 T11: 0.8680 T22: 0.8027 REMARK 3 T33: 0.3902 T12: -0.0516 REMARK 3 T13: 0.1169 T23: 0.0971 REMARK 3 L TENSOR REMARK 3 L11: 3.1848 L22: 7.7126 REMARK 3 L33: 5.6604 L12: 0.3124 REMARK 3 L13: 0.2084 L23: -0.1927 REMARK 3 S TENSOR REMARK 3 S11: -0.3199 S12: 0.8944 S13: -0.2143 REMARK 3 S21: -1.3888 S22: 0.0925 S23: -0.7345 REMARK 3 S31: 0.9373 S32: 0.6889 S33: 0.0611 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 56 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.0109 127.2610 -27.4055 REMARK 3 T TENSOR REMARK 3 T11: 0.5389 T22: 0.7563 REMARK 3 T33: 0.3768 T12: -0.1973 REMARK 3 T13: -0.0398 T23: 0.1555 REMARK 3 L TENSOR REMARK 3 L11: 3.7617 L22: 8.5359 REMARK 3 L33: 5.3026 L12: -1.5057 REMARK 3 L13: -0.0967 L23: 0.6699 REMARK 3 S TENSOR REMARK 3 S11: -0.0955 S12: 0.2164 S13: 0.6061 REMARK 3 S21: -0.7562 S22: 0.2264 S23: -0.9095 REMARK 3 S31: 0.3793 S32: 0.7664 S33: 0.0792 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 82 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.4717 133.6916 -34.1841 REMARK 3 T TENSOR REMARK 3 T11: 0.7826 T22: 0.8611 REMARK 3 T33: 0.6292 T12: -0.2087 REMARK 3 T13: -0.1631 T23: 0.2680 REMARK 3 L TENSOR REMARK 3 L11: 8.9295 L22: 9.2503 REMARK 3 L33: 7.5551 L12: -4.7575 REMARK 3 L13: -4.2781 L23: 2.9125 REMARK 3 S TENSOR REMARK 3 S11: -0.1166 S12: 1.0809 S13: 0.8035 REMARK 3 S21: -1.4685 S22: 0.1189 S23: -0.1880 REMARK 3 S31: -0.5070 S32: 0.4161 S33: -0.0570 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CBV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1000232509. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979100 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55287 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 76.171 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 4.757 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.54 REMARK 200 R MERGE FOR SHELL (I) : 0.89200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1M6T, 3PGF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM FORMATE, 20 % W/V PEG REMARK 280 3350, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.07133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.03567 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 79.55350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.51783 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 132.58917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU H 1 REMARK 465 ILE H 2 REMARK 465 SER L 1 REMARK 465 LYS B 104 REMARK 465 TYR B 105 REMARK 465 LEU B 106 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA H 113 -141.80 58.42 REMARK 500 ALA H 128 -179.07 -69.94 REMARK 500 SER H 201 1.66 -68.16 REMARK 500 SER L 31 -134.81 52.15 REMARK 500 ALA L 52 -37.66 71.57 REMARK 500 SER L 53 -0.68 -141.78 REMARK 500 ASN L 140 67.87 61.16 REMARK 500 LYS B 51 -165.34 -102.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA L 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP L 187 OD2 REMARK 620 2 HOH L 510 O 117.5 REMARK 620 3 HOH L 527 O 104.7 103.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT H 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT L 303 DBREF 6CBV H 1 229 PDB 6CBV 6CBV 1 229 DBREF 6CBV L 1 214 PDB 6CBV 6CBV 1 214 DBREF 6CBV B 1 106 UNP P0ABE7 C562_ECOLX 23 128 SEQADV 6CBV TRP B 7 UNP P0ABE7 MET 29 ENGINEERED MUTATION SEQADV 6CBV ILE B 102 UNP P0ABE7 HIS 124 ENGINEERED MUTATION SEQADV 6CBV LEU B 106 UNP P0ABE7 ARG 128 ENGINEERED MUTATION SEQRES 1 H 229 GLU ILE SER GLU VAL GLN LEU VAL GLU SER GLY GLY GLY SEQRES 2 H 229 LEU VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS ALA SEQRES 3 H 229 ALA SER GLY PHE ASN VAL VAL ASP PHE SER LEU HIS TRP SEQRES 4 H 229 VAL ARG GLN ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA SEQRES 5 H 229 TYR ILE SER SER SER SER GLY SER THR SER TYR ALA ASP SEQRES 6 H 229 SER VAL LYS GLY ARG PHE THR ILE SER ALA ASP THR SER SEQRES 7 H 229 LYS ASN THR ALA TYR LEU GLN MET ASN SER LEU ARG ALA SEQRES 8 H 229 GLU ASP THR ALA VAL TYR TYR CYS ALA ARG TRP GLY TYR SEQRES 9 H 229 TRP PRO GLY GLU PRO TRP TRP LYS ALA PHE ASP TYR TRP SEQRES 10 H 229 GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SER THR SEQRES 11 H 229 LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SEQRES 12 H 229 SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL SEQRES 13 H 229 LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SEQRES 14 H 229 SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA SEQRES 15 H 229 VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL SEQRES 16 H 229 VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR SEQRES 17 H 229 ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL SEQRES 18 H 229 ASP LYS LYS VAL GLU PRO LYS SER SEQRES 1 L 214 SER ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER SEQRES 2 L 214 ALA SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SEQRES 3 L 214 SER GLN SER VAL SER SER ALA VAL ALA TRP TYR GLN GLN SEQRES 4 L 214 LYS PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR SER ALA SEQRES 5 L 214 SER SER LEU TYR SER GLY VAL PRO SER ARG PHE SER GLY SEQRES 6 L 214 SER ARG SER GLY THR ASP PHE THR LEU THR ILE SER SER SEQRES 7 L 214 LEU GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN SEQRES 8 L 214 TYR LEU TYR TYR SER LEU VAL THR PHE GLY GLN GLY THR SEQRES 9 L 214 LYS VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL SEQRES 10 L 214 PHE ILE PHE PRO PRO SER ASP SER GLN LEU LYS SER GLY SEQRES 11 L 214 THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO SEQRES 12 L 214 ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU SEQRES 13 L 214 GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SEQRES 14 L 214 SER LYS ASP SER THR TYR SER LEU SER SER THR LEU THR SEQRES 15 L 214 LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA SEQRES 16 L 214 CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR SEQRES 17 L 214 LYS SER PHE ASN ARG GLY SEQRES 1 B 106 ALA ASP LEU GLU ASP ASN TRP GLU THR LEU ASN ASP ASN SEQRES 2 B 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 B 106 LYS ASP ALA LEU THR LYS MET ARG ALA ALA ALA LEU ASP SEQRES 4 B 106 ALA GLN LYS ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 B 106 PRO ASP SER PRO GLU MET LYS ASP PHE ARG HIS GLY PHE SEQRES 6 B 106 ASP ILE LEU VAL GLY GLN ILE ASP ASP ALA LEU LYS LEU SEQRES 7 B 106 ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 B 106 GLU GLN LEU LYS THR THR ARG ASN ALA TYR ILE GLN LYS SEQRES 9 B 106 TYR LEU HET GOL H 301 6 HET FMT H 302 3 HET NA L 301 1 HET GOL L 302 6 HET FMT L 303 3 HETNAM GOL GLYCEROL HETNAM FMT FORMIC ACID HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 FMT 2(C H2 O2) FORMUL 6 NA NA 1+ FORMUL 9 HOH *320(H2 O) HELIX 1 AA1 ASN H 31 VAL H 33 5 3 HELIX 2 AA2 ARG H 90 THR H 94 5 5 HELIX 3 AA3 GLY H 107 LYS H 112 1 6 HELIX 4 AA4 SER H 170 ALA H 172 5 3 HELIX 5 AA5 SER H 201 LEU H 203 5 3 HELIX 6 AA6 LYS H 215 ASN H 218 5 4 HELIX 7 AA7 GLN L 80 PHE L 84 5 5 HELIX 8 AA8 TYR L 94 VAL L 98 5 5 HELIX 9 AA9 SER L 123 SER L 129 1 7 HELIX 10 AB1 LYS L 185 LYS L 190 1 6 HELIX 11 AB2 ASP B 2 LYS B 19 1 18 HELIX 12 AB3 ASN B 22 GLN B 41 1 20 HELIX 13 AB4 SER B 55 GLU B 81 1 27 HELIX 14 AB5 LYS B 83 TYR B 101 1 19 SHEET 1 AA1 4 GLN H 6 SER H 10 0 SHEET 2 AA1 4 LEU H 21 SER H 28 -1 O SER H 24 N SER H 10 SHEET 3 AA1 4 THR H 81 MET H 86 -1 O MET H 86 N LEU H 21 SHEET 4 AA1 4 PHE H 71 ASP H 76 -1 N THR H 72 O GLN H 85 SHEET 1 AA2 6 LEU H 14 VAL H 15 0 SHEET 2 AA2 6 THR H 121 VAL H 125 1 O THR H 124 N VAL H 15 SHEET 3 AA2 6 ALA H 95 GLY H 103 -1 N TYR H 97 O THR H 121 SHEET 4 AA2 6 PHE H 35 GLN H 42 -1 N VAL H 40 O TYR H 98 SHEET 5 AA2 6 GLU H 49 SER H 55 -1 O VAL H 51 N TRP H 39 SHEET 6 AA2 6 THR H 61 TYR H 63 -1 O SER H 62 N TYR H 53 SHEET 1 AA3 4 SER H 134 LEU H 138 0 SHEET 2 AA3 4 THR H 149 TYR H 159 -1 O LYS H 157 N SER H 134 SHEET 3 AA3 4 TYR H 190 PRO H 199 -1 O LEU H 192 N VAL H 156 SHEET 4 AA3 4 VAL H 177 THR H 179 -1 N HIS H 178 O VAL H 195 SHEET 1 AA4 4 SER H 134 LEU H 138 0 SHEET 2 AA4 4 THR H 149 TYR H 159 -1 O LYS H 157 N SER H 134 SHEET 3 AA4 4 TYR H 190 PRO H 199 -1 O LEU H 192 N VAL H 156 SHEET 4 AA4 4 VAL H 183 LEU H 184 -1 N VAL H 183 O SER H 191 SHEET 1 AA5 3 THR H 165 TRP H 168 0 SHEET 2 AA5 3 ILE H 209 HIS H 214 -1 O ASN H 211 N SER H 167 SHEET 3 AA5 3 THR H 219 LYS H 224 -1 O VAL H 221 N VAL H 212 SHEET 1 AA6 4 MET L 5 SER L 8 0 SHEET 2 AA6 4 VAL L 20 ALA L 26 -1 O ARG L 25 N THR L 6 SHEET 3 AA6 4 ASP L 71 ILE L 76 -1 O LEU L 74 N ILE L 22 SHEET 4 AA6 4 PHE L 63 SER L 68 -1 N SER L 64 O THR L 75 SHEET 1 AA7 6 SER L 11 SER L 15 0 SHEET 2 AA7 6 THR L 104 LYS L 109 1 O GLU L 107 N LEU L 12 SHEET 3 AA7 6 ALA L 85 GLN L 91 -1 N ALA L 85 O VAL L 106 SHEET 4 AA7 6 VAL L 34 GLN L 39 -1 N TYR L 37 O TYR L 88 SHEET 5 AA7 6 LYS L 46 TYR L 50 -1 O LEU L 48 N TRP L 36 SHEET 6 AA7 6 SER L 54 LEU L 55 -1 O SER L 54 N TYR L 50 SHEET 1 AA8 4 SER L 11 SER L 15 0 SHEET 2 AA8 4 THR L 104 LYS L 109 1 O GLU L 107 N LEU L 12 SHEET 3 AA8 4 ALA L 85 GLN L 91 -1 N ALA L 85 O VAL L 106 SHEET 4 AA8 4 THR L 99 PHE L 100 -1 O THR L 99 N GLN L 91 SHEET 1 AA9 4 SER L 116 PHE L 120 0 SHEET 2 AA9 4 THR L 131 PHE L 141 -1 O LEU L 137 N PHE L 118 SHEET 3 AA9 4 TYR L 175 SER L 184 -1 O TYR L 175 N PHE L 141 SHEET 4 AA9 4 SER L 161 VAL L 165 -1 N GLN L 162 O THR L 180 SHEET 1 AB1 4 ALA L 155 LEU L 156 0 SHEET 2 AB1 4 LYS L 147 VAL L 152 -1 N VAL L 152 O ALA L 155 SHEET 3 AB1 4 VAL L 193 THR L 199 -1 O ALA L 195 N LYS L 151 SHEET 4 AB1 4 VAL L 207 ASN L 212 -1 O VAL L 207 N VAL L 198 SSBOND 1 CYS H 25 CYS H 99 1555 1555 2.05 SSBOND 2 CYS H 154 CYS H 210 1555 1555 2.03 SSBOND 3 CYS L 24 CYS L 89 1555 1555 2.05 SSBOND 4 CYS L 136 CYS L 196 1555 1555 2.05 LINK OD2 ASP L 187 NA NA L 301 1555 1555 2.65 LINK NA NA L 301 O HOH L 510 1555 1555 2.80 LINK NA NA L 301 O HOH L 527 1555 1555 2.77 CISPEP 1 TRP H 105 PRO H 106 0 -1.90 CISPEP 2 PHE H 160 PRO H 161 0 -7.68 CISPEP 3 GLU H 162 PRO H 163 0 -3.54 CISPEP 4 SER L 8 PRO L 9 0 -5.46 CISPEP 5 TYR L 142 PRO L 143 0 1.30 SITE 1 AC1 12 LYS B 77 SER H 55 SER H 58 SER H 60 SITE 2 AC1 12 TYR H 104 SER H 186 SER H 187 HOH H 402 SITE 3 AC1 12 HOH H 415 HOH H 443 HOH H 494 HOH H 519 SITE 1 AC2 7 LYS B 77 ASN B 80 TYR H 53 THR H 61 SITE 2 AC2 7 SER H 62 HOH H 420 TYR L 94 SITE 1 AC3 5 LEU L 183 SER L 184 ASP L 187 HOH L 510 SITE 2 AC3 5 HOH L 527 SITE 1 AC4 4 GLN L 38 GLY L 58 PRO L 60 HOH L 444 SITE 1 AC5 9 ASN H 31 PHE H 136 LYS H 157 ASP H 158 SITE 2 AC5 9 HOH H 441 GLN L 126 SER L 129 THR L 131 SITE 3 AC5 9 HOH L 403 CRYST1 87.954 87.954 159.107 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011370 0.006564 0.000000 0.00000 SCALE2 0.000000 0.013128 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006285 0.00000