HEADER RNA 05-FEB-18 6CC1 TITLE CRYSTAL STRUCTURE OF YKOY-ALX RIBOSWITCH CHIMERA BOUND TO CADMIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (94-MER); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS; SOURCE 4 ORGANISM_TAXID: 1358 KEYWDS RIBOSWICH, YYBP-YKOY, RNA EXPDTA X-RAY DIFFRACTION AUTHOR S.T.BACHAS,A.R.FERRE-D'AMARE REVDAT 3 13-MAR-24 6CC1 1 LINK REVDAT 2 29-AUG-18 6CC1 1 JRNL REVDAT 1 13-JUN-18 6CC1 0 JRNL AUTH S.T.BACHAS,A.R.FERRE-D'AMARE JRNL TITL CONVERGENT USE OF HEPTACOORDINATION FOR CATION SELECTIVITY JRNL TITL 2 BY RNA AND PROTEIN METALLOREGULATORS. JRNL REF CELL CHEM BIOL V. 25 962 2018 JRNL REFN ESSN 2451-9448 JRNL PMID 29805037 JRNL DOI 10.1016/J.CHEMBIOL.2018.04.016 REMARK 2 REMARK 2 RESOLUTION. 2.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 22931 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.780 REMARK 3 FREE R VALUE TEST SET COUNT : 1554 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.5828 - 5.6360 0.89 1840 133 0.1591 0.2374 REMARK 3 2 5.6360 - 4.4823 0.93 1964 146 0.1813 0.2964 REMARK 3 3 4.4823 - 3.9183 0.94 1946 125 0.1929 0.2366 REMARK 3 4 3.9183 - 3.5612 0.93 1956 149 0.2266 0.2529 REMARK 3 5 3.5612 - 3.3066 0.93 1924 144 0.2517 0.2816 REMARK 3 6 3.3066 - 3.1121 0.93 1960 144 0.2799 0.2712 REMARK 3 7 3.1121 - 2.9565 0.93 1949 140 0.3022 0.3374 REMARK 3 8 2.9565 - 2.8280 0.93 1915 138 0.3301 0.3909 REMARK 3 9 2.8280 - 2.7193 0.93 1961 138 0.3825 0.4411 REMARK 3 10 2.7193 - 2.6255 0.93 1935 140 0.4005 0.3767 REMARK 3 11 2.6255 - 2.5435 0.93 1972 156 0.4263 0.4937 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4690 REMARK 3 ANGLE : 0.666 7306 REMARK 3 CHIRALITY : 0.029 968 REMARK 3 PLANARITY : 0.004 194 REMARK 3 DIHEDRAL : 15.331 2325 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CC1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1000232462. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29350 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40 MM SODIUM CACODYLATE, 80MM SODIUM REMARK 280 CHLORIDE, 20 MM BARIUM CHLORIDE, 5 MM CADIUM CHLORIDE, 12MM REMARK 280 SPRIMINE TETRAHYDROCHLORIDE, 12% 2-METHYL-2,4-PENTANEDIOL, PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.02733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.05467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -234.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 G A 2 REMARK 465 U A 39 REMARK 465 C A 40 REMARK 465 A A 41 REMARK 465 U A 42 REMARK 465 U A 43 REMARK 465 A A 44 REMARK 465 G B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 C A 102 O5' C5' C4' O4' C3' O3' C2' REMARK 470 C A 102 O2' C1' N1 C2 O2 N3 C4 REMARK 470 C A 102 N4 C5 C6 REMARK 470 C B 102 O5' C5' C4' O4' C3' O3' C2' REMARK 470 C B 102 O2' C1' N1 C2 O2 N3 C4 REMARK 470 C B 102 N4 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP1 A B 3 O3' GTP B 201 1.26 REMARK 500 OP1 A B 3 C3' GTP B 201 1.91 REMARK 500 O2' A A 10 O2 C A 37 2.13 REMARK 500 N7 A B 29 O HOH B 301 2.15 REMARK 500 N2 G A 11 OP2 A A 93 2.16 REMARK 500 O2B GTP A 214 O HOH A 301 2.18 REMARK 500 OP2 C A 76 O HOH A 302 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2' A A 30 O2' A A 95 2665 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A 210 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 8 O6 REMARK 620 2 HOH A 319 O 76.6 REMARK 620 3 HOH A 333 O 83.8 153.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 213 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 8 OP1 REMARK 620 2 G A 9 OP2 91.1 REMARK 620 3 A A 10 OP1 88.7 85.3 REMARK 620 4 C A 45 OP2 92.8 106.7 167.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A 209 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 61 O6 REMARK 620 2 G A 62 O6 65.3 REMARK 620 3 HOH A 304 O 101.0 67.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 206 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GTP B 201 O1G REMARK 620 2 GTP B 201 N7 68.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 204 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 8 OP1 REMARK 620 2 A B 10 OP1 101.0 REMARK 620 3 U B 39 OP1 135.5 66.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 203 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 9 OP1 REMARK 620 2 U B 39 OP2 74.5 REMARK 620 3 C B 40 OP2 85.3 99.7 REMARK 620 4 C B 45 OP2 73.2 68.3 157.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA B 217 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 35 O6 REMARK 620 2 U B 36 O4 71.7 REMARK 620 3 G B 61 O6 146.5 140.1 REMARK 620 4 G B 62 O6 88.5 58.8 100.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA B 220 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U B 39 O4 REMARK 620 2 C B 40 O2 75.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA B 218 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U B 84 O4 REMARK 620 2 G B 85 O6 62.3 REMARK 620 3 HOH B 346 O 103.2 115.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA B 219 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U B 88 OP1 REMARK 620 2 HOH B 301 O 170.8 REMARK 620 3 HOH B 335 O 69.1 112.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA B 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA B 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA B 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA B 220 DBREF 6CC1 A 2 102 PDB 6CC1 6CC1 2 102 DBREF 6CC1 B 2 102 PDB 6CC1 6CC1 2 102 SEQRES 1 A 101 G A A A G G G G A G U A G SEQRES 2 A 101 C G U C G G G A A A C C G SEQRES 3 A 101 A A A C A A A G U C G U C SEQRES 4 A 101 A U U A C G U G A G G A A SEQRES 5 A 101 A C U C A C C G G C U U U SEQRES 6 A 101 G U U G A C A U A C G A A SEQRES 7 A 101 A G U A U G U U U A G C A SEQRES 8 A 101 A G A C C U U U C C SEQRES 1 B 101 G A A A G G G G A G U A G SEQRES 2 B 101 C G U C G G G A A A C C G SEQRES 3 B 101 A A A C A A A G U C G U C SEQRES 4 B 101 A U U A C G U G A G G A A SEQRES 5 B 101 A C U C A C C G G C U U U SEQRES 6 B 101 G U U G A C A U A C G A A SEQRES 7 B 101 A G U A U G U U U A G C A SEQRES 8 B 101 A G A C C U U U C C HET CD A 201 1 HET CD A 202 1 HET CD A 203 1 HET CD A 204 1 HET CD A 205 1 HET CD A 206 1 HET CD A 207 1 HET CD A 208 1 HET BA A 209 1 HET BA A 210 1 HET BA A 211 1 HET BA A 212 1 HET MG A 213 1 HET GTP A 214 32 HET GTP B 201 32 HET CD B 202 1 HET CD B 203 1 HET CD B 204 1 HET CD B 205 1 HET CD B 206 1 HET CD B 207 1 HET CD B 208 1 HET CD B 209 1 HET CD B 210 1 HET CD B 211 1 HET CD B 212 1 HET CD B 213 1 HET CD B 214 1 HET CD B 215 1 HET CD B 216 1 HET BA B 217 1 HET BA B 218 1 HET BA B 219 1 HET BA B 220 1 HETNAM CD CADMIUM ION HETNAM BA BARIUM ION HETNAM MG MAGNESIUM ION HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE FORMUL 3 CD 23(CD 2+) FORMUL 11 BA 8(BA 2+) FORMUL 15 MG MG 2+ FORMUL 16 GTP 2(C10 H16 N5 O14 P3) FORMUL 37 HOH *83(H2 O) LINK O6 G A 8 BA BA A 210 1555 1555 2.91 LINK OP1 G A 8 MG MG A 213 1555 1555 2.49 LINK OP1 G A 9 CD CD A 202 1555 1555 2.64 LINK OP2 G A 9 MG MG A 213 1555 1555 2.13 LINK OP1 A A 10 MG MG A 213 1555 1555 2.47 LINK O6 G A 21 CD CD A 204 1555 1555 2.63 LINK OP1 A A 22 CD CD A 207 1555 1555 2.65 LINK OP2 C A 45 MG MG A 213 1555 1555 2.81 LINK O6 G A 46 BA BA A 212 1555 1555 2.72 LINK O6 G A 61 BA BA A 209 1555 1555 3.12 LINK O6 G A 62 BA BA A 209 1555 1555 2.95 LINK O4 U A 69 BA BA A 211 1555 1555 3.40 LINK N7 A A 78 CD CD A 203 1555 1555 2.63 LINK CD CD A 206 O1G GTP B 201 1555 1555 2.66 LINK CD CD A 206 N7 GTP B 201 1555 1555 2.69 LINK BA BA A 209 O HOH A 304 1555 1555 2.52 LINK BA BA A 210 O HOH A 319 1555 1555 3.28 LINK BA BA A 210 O HOH A 333 1555 1555 2.74 LINK OP1 G B 8 CD CD B 204 1555 1555 2.56 LINK OP1 G B 9 CD CD B 203 1555 1555 2.58 LINK OP1 A B 10 CD CD B 204 1555 1555 2.67 LINK OP2 U B 12 CD CD B 207 1555 1555 2.69 LINK O6 G B 20 CD CD B 205 1555 1555 2.66 LINK O6 G B 21 CD CD B 202 1555 1555 2.60 LINK O6 G B 35 BA BA B 217 1555 1555 2.57 LINK O4 U B 36 BA BA B 217 1555 1555 2.92 LINK OP2 U B 39 CD CD B 203 1555 1555 2.67 LINK OP1 U B 39 CD CD B 204 1555 1555 2.61 LINK O4 U B 39 BA BA B 220 1555 1555 2.87 LINK OP2 C B 40 CD CD B 203 1555 1555 2.64 LINK O2 C B 40 BA BA B 220 1555 1555 2.64 LINK OP2 C B 45 CD CD B 203 1555 1555 2.65 LINK O6 G B 61 BA BA B 217 1555 1555 2.65 LINK O6 G B 62 BA BA B 217 1555 1555 2.94 LINK OP1 G B 77 CD CD B 214 1555 1555 2.67 LINK O4 U B 84 BA BA B 218 1555 1555 3.28 LINK O6 G B 85 BA BA B 218 1555 1555 2.91 LINK OP1 U B 88 BA BA B 219 1555 1555 3.43 LINK BA BA B 218 O HOH B 346 1555 1555 2.85 LINK BA BA B 219 O HOH B 301 1555 1555 2.61 LINK BA BA B 219 O HOH B 335 1555 1555 3.14 SITE 1 AC1 1 A A 29 SITE 1 AC2 1 G A 9 SITE 1 AC3 4 A A 78 G B 21 A B 22 A B 52 SITE 1 AC4 1 G A 21 SITE 1 AC5 2 G A 20 G A 21 SITE 1 AC6 2 A A 53 GTP B 201 SITE 1 AC7 3 A A 22 A A 52 A B 78 SITE 1 AC8 3 G A 51 HOH A 325 GTP B 201 SITE 1 AC9 4 G A 35 G A 61 G A 62 HOH A 304 SITE 1 AD1 2 G A 8 HOH A 333 SITE 1 AD2 3 U A 69 G A 70 U A 87 SITE 1 AD3 1 G A 46 SITE 1 AD4 4 G A 8 G A 9 A A 10 C A 45 SITE 1 AD5 7 A A 3 HOH A 301 HOH A 317 A B 52 SITE 2 AD5 7 A B 53 CD B 210 CD B 212 SITE 1 AD6 9 A A 22 A A 52 A A 53 CD A 206 SITE 2 AD6 9 CD A 208 HOH A 310 A B 3 C B 101 SITE 3 AD6 9 HOH B 303 SITE 1 AD7 1 G B 21 SITE 1 AD8 6 G B 9 U B 39 C B 40 A B 41 SITE 2 AD8 6 A B 44 C B 45 SITE 1 AD9 6 G B 8 G B 9 A B 10 G B 38 SITE 2 AD9 6 U B 39 C B 45 SITE 1 AE1 4 G B 19 G B 20 G B 21 HOH B 336 SITE 1 AE2 1 G B 46 SITE 1 AE3 3 U B 12 A B 13 HOH B 337 SITE 1 AE4 2 G B 77 A B 79 SITE 1 AE5 2 G B 8 HOH B 330 SITE 1 AE6 2 GTP A 214 HOH A 301 SITE 1 AE7 1 A B 3 SITE 1 AE8 2 GTP A 214 G B 51 SITE 1 AE9 1 G B 6 SITE 1 AF1 2 A A 54 G B 77 SITE 1 AF2 1 U B 43 SITE 1 AF3 3 A B 29 BA B 219 HOH B 301 SITE 1 AF4 4 G B 35 U B 36 G B 61 G B 62 SITE 1 AF5 3 U B 84 G B 85 HOH B 346 SITE 1 AF6 3 U B 88 CD B 216 HOH B 301 SITE 1 AF7 2 U B 39 C B 40 CRYST1 73.089 73.089 117.082 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013682 0.007899 0.000000 0.00000 SCALE2 0.000000 0.015799 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008541 0.00000