HEADER TRANSFERASE/ANTIBIOTIC 08-FEB-18 6CD7 TITLE CRYSTAL STRUCTURE OF APH(2")-IVA IN COMPLEX WITH PLAZOMICIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: APH(2'')-ID; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS CASSELIFLAVUS; SOURCE 3 ORGANISM_COMMON: ENTEROCOCCUS FLAVESCENS; SOURCE 4 ORGANISM_TAXID: 37734; SOURCE 5 GENE: APH(2'')-ID; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, EUKARYOTIC PROTEIN KINASE-LIKE FOLD, AMINOGLYCOSIDE KEYWDS 3 PHOSPHOTRANSFERASE, KINASE, TRANSFERASE, AMINOGLYCOSIDES, KEYWDS 4 PLAZOMICIN, ANTIBIOTIC, TRANSFERASE-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,E.EVDOKIMOVA,A.DONG,R.DI LEO,A.SAVCHENKO,K.J.SATCHELL, AUTHOR 2 J.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 5 04-OCT-23 6CD7 1 COMPND HETNAM REVDAT 4 18-DEC-19 6CD7 1 REMARK REVDAT 3 20-JUN-18 6CD7 1 JRNL REVDAT 2 25-APR-18 6CD7 1 JRNL REVDAT 1 28-FEB-18 6CD7 0 SPRSDE 28-FEB-18 6CD7 6C0C JRNL AUTH G.COX,L.EJIM,P.J.STOGIOS,K.KOTEVA,E.BORDELEAU,E.EVDOKIMOVA, JRNL AUTH 2 A.O.SIERON,A.SAVCHENKO,A.W.SERIO,K.M.KRAUSE,G.D.WRIGHT JRNL TITL PLAZOMICIN RETAINS ANTIBIOTIC ACTIVITY AGAINST MOST JRNL TITL 2 AMINOGLYCOSIDE MODIFYING ENZYMES. JRNL REF ACS INFECT DIS V. 4 980 2018 JRNL REFN ESSN 2373-8227 JRNL PMID 29634241 JRNL DOI 10.1021/ACSINFECDIS.8B00001 REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2733 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 93819 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4782 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.5982 - 4.7324 1.00 3031 171 0.1632 0.1808 REMARK 3 2 4.7324 - 3.7650 1.00 3016 150 0.1315 0.1507 REMARK 3 3 3.7650 - 3.2916 1.00 2993 159 0.1398 0.1937 REMARK 3 4 3.2916 - 2.9918 1.00 3008 150 0.1507 0.1809 REMARK 3 5 2.9918 - 2.7780 1.00 2988 166 0.1620 0.1930 REMARK 3 6 2.7780 - 2.6146 1.00 2997 154 0.1711 0.2309 REMARK 3 7 2.6146 - 2.4839 1.00 2986 173 0.1621 0.2018 REMARK 3 8 2.4839 - 2.3760 1.00 2978 156 0.1607 0.1982 REMARK 3 9 2.3760 - 2.2847 1.00 2969 151 0.1688 0.2248 REMARK 3 10 2.2847 - 2.2060 1.00 2970 169 0.1733 0.2415 REMARK 3 11 2.2060 - 2.1371 1.00 2973 174 0.1742 0.2241 REMARK 3 12 2.1371 - 2.0760 1.00 2992 152 0.1761 0.2320 REMARK 3 13 2.0760 - 2.0214 1.00 2964 174 0.1787 0.2306 REMARK 3 14 2.0214 - 1.9722 1.00 2949 156 0.1789 0.2099 REMARK 3 15 1.9722 - 1.9274 1.00 3001 170 0.1821 0.2058 REMARK 3 16 1.9274 - 1.8864 1.00 2917 171 0.1979 0.2145 REMARK 3 17 1.8864 - 1.8487 1.00 3021 166 0.1940 0.2445 REMARK 3 18 1.8487 - 1.8138 1.00 2903 162 0.1963 0.2378 REMARK 3 19 1.8138 - 1.7815 1.00 3031 155 0.1964 0.2338 REMARK 3 20 1.7815 - 1.7513 1.00 3026 138 0.2032 0.2180 REMARK 3 21 1.7513 - 1.7231 1.00 2938 144 0.2022 0.2576 REMARK 3 22 1.7231 - 1.6966 1.00 2950 173 0.2024 0.2309 REMARK 3 23 1.6966 - 1.6716 1.00 2946 180 0.2042 0.2194 REMARK 3 24 1.6716 - 1.6481 1.00 2996 159 0.2223 0.2594 REMARK 3 25 1.6481 - 1.6258 1.00 2956 159 0.2279 0.2739 REMARK 3 26 1.6258 - 1.6047 1.00 2933 162 0.2382 0.2725 REMARK 3 27 1.6047 - 1.5847 0.99 2973 150 0.2427 0.2686 REMARK 3 28 1.5847 - 1.5656 0.99 2982 150 0.2629 0.2726 REMARK 3 29 1.5656 - 1.5474 0.99 2930 136 0.2861 0.2787 REMARK 3 30 1.5474 - 1.5300 0.91 2720 152 0.2895 0.3804 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5223 REMARK 3 ANGLE : 1.090 7071 REMARK 3 CHIRALITY : 0.065 753 REMARK 3 PLANARITY : 0.006 910 REMARK 3 DIHEDRAL : 22.973 2023 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 0:42) REMARK 3 ORIGIN FOR THE GROUP (A): 40.2899 -23.2615 19.0605 REMARK 3 T TENSOR REMARK 3 T11: 0.1757 T22: 0.1738 REMARK 3 T33: 0.2532 T12: -0.0674 REMARK 3 T13: -0.0148 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 5.6892 L22: 4.9913 REMARK 3 L33: 6.4026 L12: 1.0550 REMARK 3 L13: -0.0271 L23: 0.6089 REMARK 3 S TENSOR REMARK 3 S11: 0.0462 S12: 0.0387 S13: -0.0313 REMARK 3 S21: -0.0182 S22: 0.0161 S23: 0.7394 REMARK 3 S31: 0.3267 S32: -0.4862 S33: -0.0481 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 43:145) REMARK 3 ORIGIN FOR THE GROUP (A): 56.8280 -20.6236 27.8755 REMARK 3 T TENSOR REMARK 3 T11: 0.1277 T22: 0.0745 REMARK 3 T33: 0.1138 T12: 0.0033 REMARK 3 T13: 0.0236 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.2683 L22: 0.6445 REMARK 3 L33: 1.6311 L12: -0.1325 REMARK 3 L13: 0.6797 L23: -0.5059 REMARK 3 S TENSOR REMARK 3 S11: -0.0096 S12: 0.0513 S13: -0.0240 REMARK 3 S21: -0.0463 S22: -0.0323 S23: -0.0279 REMARK 3 S31: 0.0343 S32: 0.0484 S33: 0.0323 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 146:188) REMARK 3 ORIGIN FOR THE GROUP (A): 58.7132 8.4146 36.4136 REMARK 3 T TENSOR REMARK 3 T11: 0.2500 T22: 0.1151 REMARK 3 T33: 0.2223 T12: -0.0699 REMARK 3 T13: 0.0145 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 4.8680 L22: 4.8835 REMARK 3 L33: 1.4860 L12: -3.3905 REMARK 3 L13: 0.6028 L23: -0.4161 REMARK 3 S TENSOR REMARK 3 S11: 0.0463 S12: 0.0097 S13: 0.1911 REMARK 3 S21: 0.0916 S22: -0.0366 S23: -0.3671 REMARK 3 S31: -0.0173 S32: 0.0112 S33: -0.0069 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 189:264) REMARK 3 ORIGIN FOR THE GROUP (A): 61.0982 -17.1077 40.8575 REMARK 3 T TENSOR REMARK 3 T11: 0.1269 T22: 0.0849 REMARK 3 T33: 0.0900 T12: 0.0246 REMARK 3 T13: -0.0020 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 2.4866 L22: 3.5814 REMARK 3 L33: 2.4644 L12: 1.0943 REMARK 3 L13: 0.3160 L23: -0.1520 REMARK 3 S TENSOR REMARK 3 S11: 0.0234 S12: -0.2277 S13: 0.0052 REMARK 3 S21: 0.1660 S22: -0.0971 S23: -0.0887 REMARK 3 S31: -0.1377 S32: -0.0720 S33: 0.0866 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 265:298) REMARK 3 ORIGIN FOR THE GROUP (A): 48.4215 1.1851 38.1987 REMARK 3 T TENSOR REMARK 3 T11: 0.3277 T22: 0.2217 REMARK 3 T33: 0.3020 T12: -0.0913 REMARK 3 T13: 0.0605 T23: 0.0529 REMARK 3 L TENSOR REMARK 3 L11: 8.9346 L22: 8.7530 REMARK 3 L33: 7.0602 L12: -2.0133 REMARK 3 L13: 3.1295 L23: -3.9279 REMARK 3 S TENSOR REMARK 3 S11: 0.0693 S12: -0.0115 S13: -0.0486 REMARK 3 S21: 0.0821 S22: 0.3637 S23: 0.8409 REMARK 3 S31: 0.3573 S32: -0.7384 S33: -0.4177 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 0:98) REMARK 3 ORIGIN FOR THE GROUP (A): 50.6841 11.1428 12.3072 REMARK 3 T TENSOR REMARK 3 T11: 0.1025 T22: 0.1035 REMARK 3 T33: 0.0803 T12: -0.0033 REMARK 3 T13: -0.0151 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 2.4665 L22: 1.8358 REMARK 3 L33: 0.7724 L12: 0.0490 REMARK 3 L13: -0.2115 L23: 0.0262 REMARK 3 S TENSOR REMARK 3 S11: 0.0132 S12: 0.0523 S13: 0.0375 REMARK 3 S21: 0.0069 S22: -0.0385 S23: 0.1595 REMARK 3 S31: 0.0454 S32: -0.0537 S33: 0.0200 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 99:144) REMARK 3 ORIGIN FOR THE GROUP (A): 68.6863 11.5673 -2.1242 REMARK 3 T TENSOR REMARK 3 T11: 0.1152 T22: 0.1404 REMARK 3 T33: 0.1037 T12: -0.0175 REMARK 3 T13: 0.0077 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.2839 L22: 3.6821 REMARK 3 L33: 4.0298 L12: -0.0042 REMARK 3 L13: -0.2752 L23: -2.5603 REMARK 3 S TENSOR REMARK 3 S11: -0.0243 S12: 0.1887 S13: 0.1150 REMARK 3 S21: -0.2263 S22: -0.0229 S23: -0.1253 REMARK 3 S31: -0.0094 S32: -0.0157 S33: 0.0754 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 145:188) REMARK 3 ORIGIN FOR THE GROUP (A): 61.7048 -19.2214 -1.9168 REMARK 3 T TENSOR REMARK 3 T11: 0.2079 T22: 0.0995 REMARK 3 T33: 0.1963 T12: 0.0121 REMARK 3 T13: 0.0198 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 7.2342 L22: 4.7765 REMARK 3 L33: 4.0181 L12: 3.2718 REMARK 3 L13: 3.5904 L23: 2.5194 REMARK 3 S TENSOR REMARK 3 S11: 0.1120 S12: 0.0355 S13: -0.2169 REMARK 3 S21: 0.0376 S22: 0.1598 S23: -0.2326 REMARK 3 S31: -0.0930 S32: -0.0104 S33: -0.2255 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 189:256) REMARK 3 ORIGIN FOR THE GROUP (A): 67.5765 7.2726 -4.4480 REMARK 3 T TENSOR REMARK 3 T11: 0.1882 T22: 0.2152 REMARK 3 T33: 0.1010 T12: -0.0154 REMARK 3 T13: 0.0222 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 1.4117 L22: 2.9136 REMARK 3 L33: 1.6317 L12: -0.4578 REMARK 3 L13: -0.2713 L23: -0.8096 REMARK 3 S TENSOR REMARK 3 S11: 0.0516 S12: 0.4473 S13: 0.0367 REMARK 3 S21: -0.4913 S22: -0.1111 S23: -0.1436 REMARK 3 S31: 0.1169 S32: -0.0526 S33: 0.0624 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 257:297) REMARK 3 ORIGIN FOR THE GROUP (A): 55.9366 -10.1519 -6.4744 REMARK 3 T TENSOR REMARK 3 T11: 0.4225 T22: 0.2610 REMARK 3 T33: 0.2232 T12: 0.0800 REMARK 3 T13: 0.0186 T23: -0.0359 REMARK 3 L TENSOR REMARK 3 L11: 8.8461 L22: 5.3659 REMARK 3 L33: 2.7944 L12: 5.9253 REMARK 3 L13: -1.3159 L23: -2.1048 REMARK 3 S TENSOR REMARK 3 S11: 0.0359 S12: 0.6344 S13: 0.0857 REMARK 3 S21: -0.4040 S22: 0.2862 S23: 0.4147 REMARK 3 S31: -0.2845 S32: -0.4748 S33: -0.3110 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CD7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1000232571. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93863 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 19.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.03200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.70800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4DFB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NACL, 10 MM HEPES (PH 7.5), 25% REMARK 280 (W/V) PEG3350 AND 10 MM PLAZOMICIN, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.90650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 299 REMARK 465 ILE A 300 REMARK 465 LYS A 301 REMARK 465 ILE B 298 REMARK 465 LYS B 299 REMARK 465 ILE B 300 REMARK 465 LYS B 301 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR B 284 N - CA - C ANGL. DEV. = -18.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 197 47.71 -145.16 REMARK 500 ASP A 217 77.56 62.01 REMARK 500 SER A 224 -151.43 -161.03 REMARK 500 ASP A 237 -72.11 -64.75 REMARK 500 GLU A 239 -147.87 -128.61 REMARK 500 ASP B 197 47.61 -141.35 REMARK 500 ASP B 217 66.95 66.87 REMARK 500 SER B 224 -149.92 -161.66 REMARK 500 GLU B 239 -147.18 -123.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1041 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A1042 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A1043 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A1044 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A1045 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A1046 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A1047 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A1048 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A1049 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A1050 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH B1102 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B1103 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH B1104 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH B1105 DISTANCE = 6.32 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDS B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP91189 RELATED DB: TARGETTRACK DBREF 6CD7 A 1 301 UNP O68183 O68183_ENTCA 1 301 DBREF 6CD7 B 1 301 UNP O68183 O68183_ENTCA 1 301 SEQADV 6CD7 GLY A 0 UNP O68183 EXPRESSION TAG SEQADV 6CD7 GLY B 0 UNP O68183 EXPRESSION TAG SEQRES 1 A 302 GLY MET ARG THR TYR THR PHE ASP GLN VAL GLU LYS ALA SEQRES 2 A 302 ILE GLU GLN LEU TYR PRO ASP PHE THR ILE ASN THR ILE SEQRES 3 A 302 GLU ILE SER GLY GLU GLY ASN ASP CYS ILE ALA TYR GLU SEQRES 4 A 302 ILE ASN ARG ASP PHE ILE PHE LYS PHE PRO LYS HIS SER SEQRES 5 A 302 ARG GLY SER THR ASN LEU PHE ASN GLU VAL ASN ILE LEU SEQRES 6 A 302 LYS ARG ILE HIS ASN LYS LEU PRO LEU PRO ILE PRO GLU SEQRES 7 A 302 VAL VAL PHE THR GLY MET PRO SER GLU THR TYR GLN MET SEQRES 8 A 302 SER PHE ALA GLY PHE THR LYS ILE LYS GLY VAL PRO LEU SEQRES 9 A 302 THR PRO LEU LEU LEU ASN ASN LEU PRO LYS GLN SER GLN SEQRES 10 A 302 ASN GLN ALA ALA LYS ASP LEU ALA ARG PHE LEU SER GLU SEQRES 11 A 302 LEU HIS SER ILE ASN ILE SER GLY PHE LYS SER ASN LEU SEQRES 12 A 302 VAL LEU ASP PHE ARG GLU LYS ILE ASN GLU ASP ASN LYS SEQRES 13 A 302 LYS ILE LYS LYS LEU LEU SER ARG GLU LEU LYS GLY PRO SEQRES 14 A 302 GLN MET LYS LYS VAL ASP ASP PHE TYR ARG ASP ILE LEU SEQRES 15 A 302 GLU ASN GLU ILE TYR PHE LYS TYR TYR PRO CYS LEU ILE SEQRES 16 A 302 HIS ASN ASP PHE SER SER ASP HIS ILE LEU PHE ASP THR SEQRES 17 A 302 GLU LYS ASN THR ILE CYS GLY ILE ILE ASP PHE GLY ASP SEQRES 18 A 302 ALA ALA ILE SER ASP PRO ASP ASN ASP PHE ILE SER LEU SEQRES 19 A 302 MET GLU ASP ASP GLU GLU TYR GLY MET GLU PHE VAL SER SEQRES 20 A 302 LYS ILE LEU ASN HIS TYR LYS HIS LYS ASP ILE PRO THR SEQRES 21 A 302 VAL LEU GLU LYS TYR ARG MET LYS GLU LYS TYR TRP SER SEQRES 22 A 302 PHE GLU LYS ILE ILE TYR GLY LYS GLU TYR GLY TYR MET SEQRES 23 A 302 ASP TRP TYR GLU GLU GLY LEU ASN GLU ILE ARG SER ILE SEQRES 24 A 302 LYS ILE LYS SEQRES 1 B 302 GLY MET ARG THR TYR THR PHE ASP GLN VAL GLU LYS ALA SEQRES 2 B 302 ILE GLU GLN LEU TYR PRO ASP PHE THR ILE ASN THR ILE SEQRES 3 B 302 GLU ILE SER GLY GLU GLY ASN ASP CYS ILE ALA TYR GLU SEQRES 4 B 302 ILE ASN ARG ASP PHE ILE PHE LYS PHE PRO LYS HIS SER SEQRES 5 B 302 ARG GLY SER THR ASN LEU PHE ASN GLU VAL ASN ILE LEU SEQRES 6 B 302 LYS ARG ILE HIS ASN LYS LEU PRO LEU PRO ILE PRO GLU SEQRES 7 B 302 VAL VAL PHE THR GLY MET PRO SER GLU THR TYR GLN MET SEQRES 8 B 302 SER PHE ALA GLY PHE THR LYS ILE LYS GLY VAL PRO LEU SEQRES 9 B 302 THR PRO LEU LEU LEU ASN ASN LEU PRO LYS GLN SER GLN SEQRES 10 B 302 ASN GLN ALA ALA LYS ASP LEU ALA ARG PHE LEU SER GLU SEQRES 11 B 302 LEU HIS SER ILE ASN ILE SER GLY PHE LYS SER ASN LEU SEQRES 12 B 302 VAL LEU ASP PHE ARG GLU LYS ILE ASN GLU ASP ASN LYS SEQRES 13 B 302 LYS ILE LYS LYS LEU LEU SER ARG GLU LEU LYS GLY PRO SEQRES 14 B 302 GLN MET LYS LYS VAL ASP ASP PHE TYR ARG ASP ILE LEU SEQRES 15 B 302 GLU ASN GLU ILE TYR PHE LYS TYR TYR PRO CYS LEU ILE SEQRES 16 B 302 HIS ASN ASP PHE SER SER ASP HIS ILE LEU PHE ASP THR SEQRES 17 B 302 GLU LYS ASN THR ILE CYS GLY ILE ILE ASP PHE GLY ASP SEQRES 18 B 302 ALA ALA ILE SER ASP PRO ASP ASN ASP PHE ILE SER LEU SEQRES 19 B 302 MET GLU ASP ASP GLU GLU TYR GLY MET GLU PHE VAL SER SEQRES 20 B 302 LYS ILE LEU ASN HIS TYR LYS HIS LYS ASP ILE PRO THR SEQRES 21 B 302 VAL LEU GLU LYS TYR ARG MET LYS GLU LYS TYR TRP SER SEQRES 22 B 302 PHE GLU LYS ILE ILE TYR GLY LYS GLU TYR GLY TYR MET SEQRES 23 B 302 ASP TRP TYR GLU GLU GLY LEU ASN GLU ILE ARG SER ILE SEQRES 24 B 302 LYS ILE LYS HET CL A 401 1 HET EDS B 401 41 HET CL B 402 1 HET CL B 403 1 HET CL B 404 1 HETNAM CL CHLORIDE ION HETNAM EDS (2S)-4-AMINO-N-[(1R,2S,3S,4R,5S)-5-AMINO-4-{[(2S,3R)-3- HETNAM 2 EDS AMINO-6-{[(2-HYDROXYETHYL)AMINO]METHYL}-3,4-DIHYDRO- HETNAM 3 EDS 2H-PYRAN-2-Y L]OXY}-2-{[3-DEOXY-4-C-METHYL-3- HETNAM 4 EDS (METHYLAMINO)-BETA-L-ARABINOPYRANOSYL]OXY}-3- HETNAM 5 EDS HYDROXYCYCLOHEXYL]-2-HYDROXYBUTANAMIDE HETSYN EDS PLAZOMICIN FORMUL 3 CL 4(CL 1-) FORMUL 4 EDS C25 H48 N6 O10 FORMUL 8 HOH *1155(H2 O) HELIX 1 AA1 THR A 5 TYR A 17 1 13 HELIX 2 AA2 HIS A 50 HIS A 68 1 19 HELIX 3 AA3 THR A 104 LEU A 111 1 8 HELIX 4 AA4 PRO A 112 SER A 132 1 21 HELIX 5 AA5 LYS A 139 VAL A 143 5 5 HELIX 6 AA6 ASP A 145 SER A 162 1 18 HELIX 7 AA7 LYS A 166 GLU A 182 1 17 HELIX 8 AA8 ASN A 183 PHE A 187 5 5 HELIX 9 AA9 SER A 199 ASP A 201 5 3 HELIX 10 AB1 ASP A 227 SER A 232 1 6 HELIX 11 AB2 GLY A 241 LYS A 253 1 13 HELIX 12 AB3 ASP A 256 GLY A 283 1 28 HELIX 13 AB4 TYR A 284 ILE A 298 1 15 HELIX 14 AB5 THR B 5 TYR B 17 1 13 HELIX 15 AB6 HIS B 50 ILE B 67 1 18 HELIX 16 AB7 THR B 104 LEU B 111 1 8 HELIX 17 AB8 PRO B 112 ILE B 133 1 22 HELIX 18 AB9 LYS B 139 VAL B 143 5 5 HELIX 19 AC1 ASP B 145 SER B 162 1 18 HELIX 20 AC2 LYS B 166 GLU B 182 1 17 HELIX 21 AC3 ASN B 183 PHE B 187 5 5 HELIX 22 AC4 SER B 199 ASP B 201 5 3 HELIX 23 AC5 ASP B 227 SER B 232 1 6 HELIX 24 AC6 GLY B 241 LYS B 253 1 13 HELIX 25 AC7 ASP B 256 TYR B 282 1 27 HELIX 26 AC8 MET B 285 SER B 297 1 13 SHEET 1 AA1 5 ILE A 25 GLU A 30 0 SHEET 2 AA1 5 CYS A 34 ILE A 39 -1 O ALA A 36 N GLY A 29 SHEET 3 AA1 5 PHE A 43 PRO A 48 -1 O PHE A 45 N TYR A 37 SHEET 4 AA1 5 ALA A 93 THR A 96 -1 O PHE A 95 N ILE A 44 SHEET 5 AA1 5 VAL A 78 THR A 81 -1 N VAL A 79 O GLY A 94 SHEET 1 AA2 3 VAL A 101 PRO A 102 0 SHEET 2 AA2 3 ILE A 203 ASP A 206 -1 O PHE A 205 N VAL A 101 SHEET 3 AA2 3 THR A 211 ILE A 215 -1 O THR A 211 N ASP A 206 SHEET 1 AA3 2 CYS A 192 ILE A 194 0 SHEET 2 AA3 2 ALA A 222 SER A 224 -1 O ALA A 222 N ILE A 194 SHEET 1 AA4 5 ILE B 25 GLU B 30 0 SHEET 2 AA4 5 CYS B 34 ILE B 39 -1 O ALA B 36 N GLY B 29 SHEET 3 AA4 5 PHE B 43 PRO B 48 -1 O PHE B 45 N TYR B 37 SHEET 4 AA4 5 ALA B 93 THR B 96 -1 O PHE B 95 N ILE B 44 SHEET 5 AA4 5 VAL B 78 THR B 81 -1 N VAL B 79 O GLY B 94 SHEET 1 AA5 3 VAL B 101 PRO B 102 0 SHEET 2 AA5 3 ILE B 203 ASP B 206 -1 O PHE B 205 N VAL B 101 SHEET 3 AA5 3 THR B 211 ILE B 215 -1 O THR B 211 N ASP B 206 SHEET 1 AA6 2 CYS B 192 ILE B 194 0 SHEET 2 AA6 2 ALA B 222 SER B 224 -1 O ALA B 222 N ILE B 194 SITE 1 AC1 3 VAL A 78 HOH A 552 HOH A 605 SITE 1 AC2 20 ASN B 32 ASP B 220 GLU B 235 GLU B 238 SITE 2 AC2 20 GLU B 268 TRP B 271 TYR B 284 TRP B 287 SITE 3 AC2 20 HOH B 512 HOH B 545 HOH B 565 HOH B 581 SITE 4 AC2 20 HOH B 587 HOH B 600 HOH B 626 HOH B 691 SITE 5 AC2 20 HOH B 718 HOH B 720 HOH B 729 HOH B 758 SITE 1 AC3 3 TYR B 17 PRO B 18 ASP B 19 SITE 1 AC4 1 ARG B 66 SITE 1 AC5 3 LYS B 275 GLU B 290 HOH B 759 CRYST1 43.455 101.813 72.921 90.00 98.47 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023012 0.000000 0.003426 0.00000 SCALE2 0.000000 0.009822 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013865 0.00000