HEADER PROTEIN BINDING 08-FEB-18 6CDD TITLE NPL4 ZINC FINGER AND MPN DOMAINS (CHAETOMIUM THERMOPHILUM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NPL4 ZINC FINGER; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM (STRAIN DSM 1495 / CBS SOURCE 3 144.50 / IMI 039719); SOURCE 4 ORGANISM_TAXID: 759272; SOURCE 5 STRAIN: DSM 1495 / CBS 144.50 / IMI 039719; SOURCE 6 GENE: CTHT_0009420; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: K27SUMO KEYWDS AAA ATPASE COFACTOR, ZINC FINGER, MPN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR N.O.BODNAR,T.A.RAPOPORT REVDAT 6 03-APR-24 6CDD 1 REMARK REVDAT 5 13-MAR-24 6CDD 1 REMARK REVDAT 4 20-NOV-19 6CDD 1 REMARK REVDAT 3 25-JUL-18 6CDD 1 JRNL REVDAT 2 18-JUL-18 6CDD 1 JRNL REVDAT 1 04-JUL-18 6CDD 0 JRNL AUTH N.O.BODNAR,K.H.KIM,Z.JI,T.E.WALES,V.SVETLOV,E.NUDLER, JRNL AUTH 2 J.R.ENGEN,T.WALZ,T.A.RAPOPORT JRNL TITL STRUCTURE OF THE CDC48 ATPASE WITH ITS UBIQUITIN-BINDING JRNL TITL 2 COFACTOR UFD1-NPL4. JRNL REF NAT. STRUCT. MOL. BIOL. V. 25 616 2018 JRNL REFN ESSN 1545-9985 JRNL PMID 29967539 JRNL DOI 10.1038/S41594-018-0085-X REMARK 2 REMARK 2 RESOLUTION. 2.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 96.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.335 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 94503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.886 REMARK 3 FREE R VALUE TEST SET COUNT : 4617 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 96.1744 - 8.0224 0.96 3030 143 0.1758 0.2052 REMARK 3 2 8.0224 - 6.3680 0.98 3088 180 0.1777 0.1963 REMARK 3 3 6.3680 - 5.5632 0.94 2916 184 0.1814 0.2212 REMARK 3 4 5.5632 - 5.0545 0.98 3083 179 0.1573 0.1995 REMARK 3 5 5.0545 - 4.6923 0.98 3031 205 0.1399 0.1448 REMARK 3 6 4.6923 - 4.4156 0.98 3065 178 0.1299 0.1520 REMARK 3 7 4.4156 - 4.1945 0.95 3018 114 0.1299 0.1828 REMARK 3 8 4.1945 - 4.0119 0.96 3067 107 0.1561 0.1902 REMARK 3 9 4.0119 - 3.8574 0.97 3064 151 0.1734 0.2018 REMARK 3 10 3.8574 - 3.7243 0.98 3063 152 0.1745 0.2505 REMARK 3 11 3.7243 - 3.6079 0.98 3134 135 0.1919 0.2754 REMARK 3 12 3.6079 - 3.5047 0.98 3129 153 0.1983 0.2638 REMARK 3 13 3.5047 - 3.4125 0.98 3071 151 0.2124 0.2977 REMARK 3 14 3.4125 - 3.3292 0.98 3090 173 0.2285 0.2698 REMARK 3 15 3.3292 - 3.2535 0.96 3049 130 0.2385 0.2766 REMARK 3 16 3.2535 - 3.1843 0.96 3035 159 0.2640 0.3112 REMARK 3 17 3.1843 - 3.1206 0.98 3014 162 0.2597 0.3354 REMARK 3 18 3.1206 - 3.0617 0.98 3127 189 0.2534 0.3103 REMARK 3 19 3.0617 - 3.0070 0.99 3049 165 0.2449 0.2921 REMARK 3 20 3.0070 - 2.9560 0.98 3148 147 0.2628 0.3125 REMARK 3 21 2.9560 - 2.9083 0.98 3074 159 0.2688 0.3044 REMARK 3 22 2.9083 - 2.8636 0.98 3091 160 0.3030 0.3351 REMARK 3 23 2.8636 - 2.8215 0.98 3015 174 0.3057 0.3559 REMARK 3 24 2.8215 - 2.7817 0.99 3149 176 0.3336 0.3535 REMARK 3 25 2.7817 - 2.7441 0.97 3068 136 0.3513 0.3938 REMARK 3 26 2.7441 - 2.7085 0.97 3103 133 0.3760 0.3946 REMARK 3 27 2.7085 - 2.6746 0.90 2758 128 0.3920 0.3797 REMARK 3 28 2.6746 - 2.6424 0.84 2693 163 0.4164 0.4196 REMARK 3 29 2.6424 - 2.6117 0.87 2748 163 0.4413 0.4760 REMARK 3 30 2.6117 - 2.5823 0.61 1916 68 0.4468 0.5115 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.485 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 81.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 105.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 7487 REMARK 3 ANGLE : 0.529 10168 REMARK 3 CHIRALITY : 0.042 1098 REMARK 3 PLANARITY : 0.003 1335 REMARK 3 DIHEDRAL : 16.933 4529 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 129 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2421 41.7728 13.9210 REMARK 3 T TENSOR REMARK 3 T11: 0.7260 T22: 1.1614 REMARK 3 T33: 0.9831 T12: 0.1107 REMARK 3 T13: 0.1465 T23: 0.1901 REMARK 3 L TENSOR REMARK 3 L11: 0.2731 L22: 0.6418 REMARK 3 L33: 0.6836 L12: 0.3018 REMARK 3 L13: 0.4200 L23: 0.3560 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: 0.6660 S13: 0.3512 REMARK 3 S21: 0.1941 S22: -0.0011 S23: 0.1105 REMARK 3 S31: 0.0367 S32: -0.2689 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 497 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5994 32.3850 25.6076 REMARK 3 T TENSOR REMARK 3 T11: 0.5975 T22: 0.7756 REMARK 3 T33: 0.7689 T12: 0.0009 REMARK 3 T13: 0.0424 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.6097 L22: 1.6464 REMARK 3 L33: 1.2740 L12: 0.2251 REMARK 3 L13: -0.3508 L23: 0.6293 REMARK 3 S TENSOR REMARK 3 S11: 0.1743 S12: 0.0624 S13: 0.0881 REMARK 3 S21: 0.3519 S22: 0.0027 S23: -0.1603 REMARK 3 S31: 0.0240 S32: -0.0141 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 498 THROUGH 596 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0191 10.8364 0.5564 REMARK 3 T TENSOR REMARK 3 T11: 0.6946 T22: 1.1784 REMARK 3 T33: 1.0970 T12: 0.0341 REMARK 3 T13: 0.0775 T23: -0.2126 REMARK 3 L TENSOR REMARK 3 L11: 0.6671 L22: 0.5880 REMARK 3 L33: 0.5539 L12: 0.1823 REMARK 3 L13: 0.1302 L23: 0.5240 REMARK 3 S TENSOR REMARK 3 S11: -0.1172 S12: 0.3704 S13: -0.4039 REMARK 3 S21: -0.0453 S22: 0.1048 S23: -0.1941 REMARK 3 S31: 0.4494 S32: -0.0811 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 132 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2689 -18.8693 46.8403 REMARK 3 T TENSOR REMARK 3 T11: 1.2230 T22: 1.0518 REMARK 3 T33: 1.0461 T12: -0.1113 REMARK 3 T13: -0.1173 T23: -0.1455 REMARK 3 L TENSOR REMARK 3 L11: 0.1381 L22: 0.3254 REMARK 3 L33: 0.0228 L12: -0.1944 REMARK 3 L13: -0.0406 L23: 0.0331 REMARK 3 S TENSOR REMARK 3 S11: -0.0763 S12: 0.3291 S13: -0.3918 REMARK 3 S21: -0.1123 S22: 0.2106 S23: 0.2655 REMARK 3 S31: 0.4549 S32: 0.0529 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 179 THROUGH 497 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5951 2.4467 63.0310 REMARK 3 T TENSOR REMARK 3 T11: 1.0211 T22: 0.7496 REMARK 3 T33: 0.7961 T12: -0.0671 REMARK 3 T13: -0.0859 T23: 0.0238 REMARK 3 L TENSOR REMARK 3 L11: 0.6187 L22: 0.2706 REMARK 3 L33: 1.4147 L12: -0.1480 REMARK 3 L13: -0.2249 L23: 0.1532 REMARK 3 S TENSOR REMARK 3 S11: -0.0964 S12: 0.1902 S13: 0.0174 REMARK 3 S21: -0.0271 S22: 0.0191 S23: 0.0203 REMARK 3 S31: -0.1951 S32: 0.0477 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 498 THROUGH 596 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7289 -15.1856 91.8619 REMARK 3 T TENSOR REMARK 3 T11: 1.2858 T22: 0.8039 REMARK 3 T33: 0.9453 T12: -0.0483 REMARK 3 T13: -0.0415 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.4172 L22: 0.4118 REMARK 3 L33: 0.6456 L12: -0.2110 REMARK 3 L13: -0.1219 L23: -0.3700 REMARK 3 S TENSOR REMARK 3 S11: -0.1734 S12: -0.0167 S13: -0.0755 REMARK 3 S21: 0.2986 S22: 0.1127 S23: 0.0809 REMARK 3 S31: 0.0491 S32: -0.0279 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND RESID 132 THROUGH 596) REMARK 3 SELECTION : CHAIN 'B' REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CDD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1000232559. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.283 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96089 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.582 REMARK 200 RESOLUTION RANGE LOW (A) : 96.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.06434 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 2.03100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.12_2829 REMARK 200 STARTING MODEL: CRYO-EM DENSITY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NA/K PHOSPHATE PH 7, 9.2% WT/VOL REMARK 280 POLY-GAMMA-GLUTAMIC ACID, 0.2 M POTASSIUM THIOCYANATE, 5% REMARK 280 PROPYLENE GLYCOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.11050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 449 REMARK 465 GLU A 450 REMARK 465 ASP A 451 REMARK 465 ASP A 452 REMARK 465 GLY A 453 REMARK 465 SER A 454 REMARK 465 PRO A 455 REMARK 465 SER A 456 REMARK 465 LYS A 457 REMARK 465 GLY A 597 REMARK 465 GLU A 598 REMARK 465 ARG A 599 REMARK 465 VAL A 600 REMARK 465 PRO A 601 REMARK 465 LYS A 602 REMARK 465 ILE B 129 REMARK 465 LYS B 130 REMARK 465 ASN B 131 REMARK 465 GLU B 449 REMARK 465 GLU B 450 REMARK 465 ASP B 451 REMARK 465 ASP B 452 REMARK 465 GLY B 453 REMARK 465 SER B 454 REMARK 465 PRO B 455 REMARK 465 SER B 456 REMARK 465 LYS B 457 REMARK 465 GLY B 597 REMARK 465 GLU B 598 REMARK 465 ARG B 599 REMARK 465 VAL B 600 REMARK 465 PRO B 601 REMARK 465 LYS B 602 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 228 49.92 -89.09 REMARK 500 THR A 278 -32.09 -133.34 REMARK 500 ASP A 317 37.80 -143.15 REMARK 500 SER A 367 -107.38 -121.74 REMARK 500 SER A 595 50.14 -102.37 REMARK 500 ARG B 225 -82.76 -88.91 REMARK 500 PRO B 228 49.65 -91.21 REMARK 500 THR B 278 -31.28 -135.01 REMARK 500 ASP B 317 36.80 -142.38 REMARK 500 SER B 367 -108.24 -121.18 REMARK 500 ALA B 536 -174.68 -57.52 REMARK 500 SER B 595 49.65 -103.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 160 SG REMARK 620 2 HIS A 162 NE2 125.1 REMARK 620 3 CYS A 168 SG 110.6 107.0 REMARK 620 4 CYS A 171 SG 112.4 87.1 112.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 227 SG REMARK 620 2 HIS A 231 NE2 98.2 REMARK 620 3 CYS A 239 SG 110.3 125.1 REMARK 620 4 CYS A 242 SG 111.6 98.8 111.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 160 SG REMARK 620 2 HIS B 162 NE2 123.4 REMARK 620 3 CYS B 168 SG 110.4 100.4 REMARK 620 4 CYS B 171 SG 114.3 92.6 114.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 227 SG REMARK 620 2 HIS B 231 NE2 105.2 REMARK 620 3 CYS B 239 SG 113.9 110.5 REMARK 620 4 CYS B 242 SG 111.7 103.0 111.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 702 DBREF 6CDD A 129 602 UNP G0S0B4 G0S0B4_CHATD 129 602 DBREF 6CDD B 129 602 UNP G0S0B4 G0S0B4_CHATD 129 602 SEQRES 1 A 474 ILE LYS ASN PRO TRP GLU VAL VAL ARG GLN SER PRO LEU SEQRES 2 A 474 ASP ASP ARG LEU ASP LYS LEU ASP GLY LYS ILE PRO ARG SEQRES 3 A 474 LYS ARG GLY ALA MET CYS ARG HIS GLY PRO LYS GLY MET SEQRES 4 A 474 CYS ASP TYR CYS THR PRO LEU ASP PRO PHE ASN PRO GLN SEQRES 5 A 474 TYR LEU GLU GLU LYS LYS ILE LYS TYR MET SER VAL HIS SEQRES 6 A 474 ALA TYR MET ARG LYS ILE ASN SER ALA THR ASN ARG PRO SEQRES 7 A 474 GLU LEU GLY SER SER PHE ILE PRO PRO LEU VAL GLU PRO SEQRES 8 A 474 TYR TYR ARG VAL LYS ARG ASP CYS PRO SER GLY HIS PRO SEQRES 9 A 474 GLN TRP PRO GLU GLY ILE CYS THR LYS CYS GLN PRO SER SEQRES 10 A 474 ALA ILE THR LEU GLN PRO GLN PRO PHE ARG MET VAL ASP SEQRES 11 A 474 HIS VAL GLU PHE ALA SER PRO GLN ILE ILE ASP ARG PHE SEQRES 12 A 474 LEU ASP ALA TRP ARG ARG THR GLY VAL GLN ARG LEU GLY SEQRES 13 A 474 ILE LEU TYR GLY ARG TYR LEU GLU TYR ASP ALA VAL PRO SEQRES 14 A 474 LEU GLY ILE LYS ALA VAL VAL GLU ALA ILE TYR GLU PRO SEQRES 15 A 474 PRO GLN VAL ASP GLU ILE ASP GLY ILE THR LEU ASN PRO SEQRES 16 A 474 TRP GLU ASN GLU GLN GLU VAL ASN GLN VAL ALA LYS TYR SEQRES 17 A 474 CYS GLY LEU GLU GLN VAL GLY VAL ILE TRP THR ASP LEU SEQRES 18 A 474 LEU ASP ALA GLY LYS GLY ASP GLY SER VAL VAL CYS LYS SEQRES 19 A 474 ARG HIS ALA ASP SER TYR PHE LEU ALA ALA GLN GLU ILE SEQRES 20 A 474 VAL PHE ALA ALA ARG LEU GLN ALA GLN HIS PRO LYS PRO SEQRES 21 A 474 SER LYS TRP SER ASP THR GLY ARG PHE GLY SER ASN PHE SEQRES 22 A 474 VAL THR CYS VAL VAL SER GLY ASN GLU GLN GLY GLU ILE SEQRES 23 A 474 SER ILE SER ALA TYR GLN MET SER ASN ASP ALA VAL GLU SEQRES 24 A 474 MET VAL ARG ALA ASP ILE ILE GLU PRO SER ALA ASP PRO SEQRES 25 A 474 THR LEU MET LEU VAL ARG GLU GLU GLU GLU ASP ASP GLY SEQRES 26 A 474 SER PRO SER LYS THR ARG TYR ILE PRO GLU VAL PHE TYR SEQRES 27 A 474 ARG LYS ILE ASN GLU TYR GLY ALA ASN VAL LEU GLU ASN SEQRES 28 A 474 ALA LYS PRO ALA PHE PRO VAL GLU TYR LEU PHE VAL THR SEQRES 29 A 474 LEU THR HIS GLY PHE PRO ASP SER PRO SER PRO LEU PHE SEQRES 30 A 474 THR ASP ASN ILE PHE PRO ILE GLU ASN ARG GLU TYR VAL SEQRES 31 A 474 GLY GLU ALA GLN GLU VAL SER ALA VAL ALA LYS ALA LEU SEQRES 32 A 474 LYS VAL HIS GLU ALA ASP ALA PRO MET ASN VAL SER ASP SEQRES 33 A 474 PHE HIS LEU LEU CYS PHE ILE HIS GLN MET SER VAL LEU SEQRES 34 A 474 SER LYS GLU GLU GLU ALA LEU LEU CYS ARG VAL ALA THR SEQRES 35 A 474 LEU HIS ASP LEU ALA GLU SER PHE GLN LEU ARG SER THR SEQRES 36 A 474 THR GLY TRP GLN THR LEU HIS MET ILE LEU GLN SER THR SEQRES 37 A 474 GLY GLU ARG VAL PRO LYS SEQRES 1 B 474 ILE LYS ASN PRO TRP GLU VAL VAL ARG GLN SER PRO LEU SEQRES 2 B 474 ASP ASP ARG LEU ASP LYS LEU ASP GLY LYS ILE PRO ARG SEQRES 3 B 474 LYS ARG GLY ALA MET CYS ARG HIS GLY PRO LYS GLY MET SEQRES 4 B 474 CYS ASP TYR CYS THR PRO LEU ASP PRO PHE ASN PRO GLN SEQRES 5 B 474 TYR LEU GLU GLU LYS LYS ILE LYS TYR MET SER VAL HIS SEQRES 6 B 474 ALA TYR MET ARG LYS ILE ASN SER ALA THR ASN ARG PRO SEQRES 7 B 474 GLU LEU GLY SER SER PHE ILE PRO PRO LEU VAL GLU PRO SEQRES 8 B 474 TYR TYR ARG VAL LYS ARG ASP CYS PRO SER GLY HIS PRO SEQRES 9 B 474 GLN TRP PRO GLU GLY ILE CYS THR LYS CYS GLN PRO SER SEQRES 10 B 474 ALA ILE THR LEU GLN PRO GLN PRO PHE ARG MET VAL ASP SEQRES 11 B 474 HIS VAL GLU PHE ALA SER PRO GLN ILE ILE ASP ARG PHE SEQRES 12 B 474 LEU ASP ALA TRP ARG ARG THR GLY VAL GLN ARG LEU GLY SEQRES 13 B 474 ILE LEU TYR GLY ARG TYR LEU GLU TYR ASP ALA VAL PRO SEQRES 14 B 474 LEU GLY ILE LYS ALA VAL VAL GLU ALA ILE TYR GLU PRO SEQRES 15 B 474 PRO GLN VAL ASP GLU ILE ASP GLY ILE THR LEU ASN PRO SEQRES 16 B 474 TRP GLU ASN GLU GLN GLU VAL ASN GLN VAL ALA LYS TYR SEQRES 17 B 474 CYS GLY LEU GLU GLN VAL GLY VAL ILE TRP THR ASP LEU SEQRES 18 B 474 LEU ASP ALA GLY LYS GLY ASP GLY SER VAL VAL CYS LYS SEQRES 19 B 474 ARG HIS ALA ASP SER TYR PHE LEU ALA ALA GLN GLU ILE SEQRES 20 B 474 VAL PHE ALA ALA ARG LEU GLN ALA GLN HIS PRO LYS PRO SEQRES 21 B 474 SER LYS TRP SER ASP THR GLY ARG PHE GLY SER ASN PHE SEQRES 22 B 474 VAL THR CYS VAL VAL SER GLY ASN GLU GLN GLY GLU ILE SEQRES 23 B 474 SER ILE SER ALA TYR GLN MET SER ASN ASP ALA VAL GLU SEQRES 24 B 474 MET VAL ARG ALA ASP ILE ILE GLU PRO SER ALA ASP PRO SEQRES 25 B 474 THR LEU MET LEU VAL ARG GLU GLU GLU GLU ASP ASP GLY SEQRES 26 B 474 SER PRO SER LYS THR ARG TYR ILE PRO GLU VAL PHE TYR SEQRES 27 B 474 ARG LYS ILE ASN GLU TYR GLY ALA ASN VAL LEU GLU ASN SEQRES 28 B 474 ALA LYS PRO ALA PHE PRO VAL GLU TYR LEU PHE VAL THR SEQRES 29 B 474 LEU THR HIS GLY PHE PRO ASP SER PRO SER PRO LEU PHE SEQRES 30 B 474 THR ASP ASN ILE PHE PRO ILE GLU ASN ARG GLU TYR VAL SEQRES 31 B 474 GLY GLU ALA GLN GLU VAL SER ALA VAL ALA LYS ALA LEU SEQRES 32 B 474 LYS VAL HIS GLU ALA ASP ALA PRO MET ASN VAL SER ASP SEQRES 33 B 474 PHE HIS LEU LEU CYS PHE ILE HIS GLN MET SER VAL LEU SEQRES 34 B 474 SER LYS GLU GLU GLU ALA LEU LEU CYS ARG VAL ALA THR SEQRES 35 B 474 LEU HIS ASP LEU ALA GLU SER PHE GLN LEU ARG SER THR SEQRES 36 B 474 THR GLY TRP GLN THR LEU HIS MET ILE LEU GLN SER THR SEQRES 37 B 474 GLY GLU ARG VAL PRO LYS HET ZN A 701 1 HET ZN A 702 1 HET ZN B 701 1 HET ZN B 702 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *228(H2 O) HELIX 1 AA1 ASN A 131 VAL A 136 1 6 HELIX 2 AA2 SER A 139 LYS A 147 1 9 HELIX 3 AA3 ASN A 178 LYS A 185 1 8 HELIX 4 AA4 VAL A 192 ASN A 200 1 9 HELIX 5 AA5 ARG A 205 GLY A 209 5 5 HELIX 6 AA6 GLN A 233 GLY A 237 5 5 HELIX 7 AA7 SER A 264 ARG A 277 1 14 HELIX 8 AA8 ASN A 326 CYS A 337 1 12 HELIX 9 AA9 ALA A 371 GLN A 384 1 14 HELIX 10 AB1 SER A 422 ALA A 431 1 10 HELIX 11 AB2 ARG A 515 GLY A 519 5 5 HELIX 12 AB3 GLU A 523 LEU A 531 1 9 HELIX 13 AB4 ASP A 544 SER A 555 1 12 HELIX 14 AB5 SER A 558 HIS A 572 1 15 HELIX 15 AB6 ASP A 573 SER A 582 1 10 HELIX 16 AB7 THR A 583 SER A 595 1 13 HELIX 17 AB8 SER B 139 LYS B 147 1 9 HELIX 18 AB9 ASN B 178 LYS B 185 1 8 HELIX 19 AC1 VAL B 192 ASN B 200 1 9 HELIX 20 AC2 ARG B 205 GLY B 209 5 5 HELIX 21 AC3 SER B 264 ARG B 277 1 14 HELIX 22 AC4 ASN B 326 CYS B 337 1 12 HELIX 23 AC5 ALA B 371 GLN B 384 1 14 HELIX 24 AC6 SER B 422 ALA B 431 1 10 HELIX 25 AC7 ARG B 515 GLY B 519 5 5 HELIX 26 AC8 GLU B 523 LEU B 531 1 9 HELIX 27 AC9 ASP B 544 SER B 555 1 12 HELIX 28 AD1 SER B 558 HIS B 572 1 15 HELIX 29 AD2 ASP B 573 SER B 582 1 10 HELIX 30 AD3 THR B 583 SER B 595 1 13 SHEET 1 AA1 2 MET A 190 SER A 191 0 SHEET 2 AA1 2 PHE A 254 ARG A 255 1 O ARG A 255 N MET A 190 SHEET 1 AA2 3 ILE A 247 LEU A 249 0 SHEET 2 AA2 3 VAL A 464 ILE A 469 1 O PHE A 465 N ILE A 247 SHEET 3 AA2 3 ASN A 475 ASN A 479 -1 O GLU A 478 N TYR A 466 SHEET 1 AA3 8 HIS A 259 PHE A 262 0 SHEET 2 AA3 8 GLY A 299 TYR A 308 1 O VAL A 304 N GLU A 261 SHEET 3 AA3 8 LEU A 283 TYR A 293 -1 N ILE A 285 O TYR A 308 SHEET 4 AA3 8 GLU A 340 ASP A 348 -1 O VAL A 342 N LEU A 286 SHEET 5 AA3 8 VAL A 402 GLY A 408 1 O CYS A 404 N VAL A 344 SHEET 6 AA3 8 ILE A 414 MET A 421 -1 O SER A 415 N SER A 407 SHEET 7 AA3 8 PHE A 490 GLY A 496 -1 O VAL A 491 N GLN A 420 SHEET 8 AA3 8 HIS A 259 PHE A 262 1 N PHE A 262 O GLY A 496 SHEET 1 AA4 2 GLN A 312 GLU A 315 0 SHEET 2 AA4 2 GLY A 318 LEU A 321 -1 O GLY A 318 N GLU A 315 SHEET 1 AA5 2 PRO A 386 PRO A 388 0 SHEET 2 AA5 2 ARG A 396 SER A 399 -1 O PHE A 397 N LYS A 387 SHEET 1 AA6 3 ILE A 434 PRO A 436 0 SHEET 2 AA6 3 LEU A 442 VAL A 445 -1 O LEU A 444 N GLU A 435 SHEET 3 AA6 3 ALA A 483 PRO A 485 -1 O PHE A 484 N MET A 443 SHEET 1 AA7 2 MET B 190 SER B 191 0 SHEET 2 AA7 2 PHE B 254 ARG B 255 1 O ARG B 255 N MET B 190 SHEET 1 AA8 3 ILE B 247 LEU B 249 0 SHEET 2 AA8 3 VAL B 464 ILE B 469 1 O PHE B 465 N ILE B 247 SHEET 3 AA8 3 ASN B 475 ASN B 479 -1 O GLU B 478 N TYR B 466 SHEET 1 AA9 8 HIS B 259 PHE B 262 0 SHEET 2 AA9 8 GLY B 299 TYR B 308 1 O ALA B 302 N HIS B 259 SHEET 3 AA9 8 LEU B 283 TYR B 293 -1 N ILE B 285 O TYR B 308 SHEET 4 AA9 8 GLU B 340 ASP B 348 -1 O GLU B 340 N GLY B 288 SHEET 5 AA9 8 VAL B 402 GLY B 408 1 O CYS B 404 N VAL B 344 SHEET 6 AA9 8 ILE B 414 MET B 421 -1 O SER B 415 N SER B 407 SHEET 7 AA9 8 PHE B 490 GLY B 496 -1 O VAL B 491 N GLN B 420 SHEET 8 AA9 8 HIS B 259 PHE B 262 1 N PHE B 262 O GLY B 496 SHEET 1 AB1 2 GLN B 312 GLU B 315 0 SHEET 2 AB1 2 GLY B 318 LEU B 321 -1 O GLY B 318 N GLU B 315 SHEET 1 AB2 3 ILE B 434 PRO B 436 0 SHEET 2 AB2 3 LEU B 442 VAL B 445 -1 O LEU B 444 N GLU B 435 SHEET 3 AB2 3 ALA B 483 PRO B 485 -1 O PHE B 484 N MET B 443 LINK SG CYS A 160 ZN ZN A 701 1555 1555 2.32 LINK NE2 HIS A 162 ZN ZN A 701 1555 1555 2.06 LINK SG CYS A 168 ZN ZN A 701 1555 1555 2.32 LINK SG CYS A 171 ZN ZN A 701 1555 1555 2.31 LINK SG CYS A 227 ZN ZN A 702 1555 1555 2.31 LINK NE2 HIS A 231 ZN ZN A 702 1555 1555 2.08 LINK SG CYS A 239 ZN ZN A 702 1555 1555 2.31 LINK SG CYS A 242 ZN ZN A 702 1555 1555 2.33 LINK SG CYS B 160 ZN ZN B 701 1555 1555 2.32 LINK NE2 HIS B 162 ZN ZN B 701 1555 1555 2.08 LINK SG CYS B 168 ZN ZN B 701 1555 1555 2.32 LINK SG CYS B 171 ZN ZN B 701 1555 1555 2.32 LINK SG CYS B 227 ZN ZN B 702 1555 1555 2.32 LINK NE2 HIS B 231 ZN ZN B 702 1555 1555 2.09 LINK SG CYS B 239 ZN ZN B 702 1555 1555 2.32 LINK SG CYS B 242 ZN ZN B 702 1555 1555 2.32 CISPEP 1 LYS A 481 PRO A 482 0 -0.93 CISPEP 2 LYS B 481 PRO B 482 0 -0.68 SITE 1 AC1 4 CYS A 160 HIS A 162 CYS A 168 CYS A 171 SITE 1 AC2 5 CYS A 227 SER A 229 HIS A 231 CYS A 239 SITE 2 AC2 5 CYS A 242 SITE 1 AC3 4 CYS B 160 HIS B 162 CYS B 168 CYS B 171 SITE 1 AC4 5 CYS B 227 SER B 229 HIS B 231 CYS B 239 SITE 2 AC4 5 CYS B 242 CRYST1 58.858 72.221 193.543 90.00 96.71 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016990 0.000000 0.002000 0.00000 SCALE2 0.000000 0.013846 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005202 0.00000