HEADER TRANSFERASE/INHIBITOR 12-FEB-18 6CEN TITLE CRYSTAL STRUCTURE OF WHSC1L1 IN COMPLEX WITH INHIBITOR PEP21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE NSD3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NUCLEAR SET DOMAIN-CONTAINING PROTEIN 3,PROTEIN WHISTLE, COMPND 5 WHSC1-LIKE 1 ISOFORM 9 WITH METHYLTRANSFERASE ACTIVITY TO LYSINE, COMPND 6 WOLF-HIRSCHHORN SYNDROME CANDIDATE 1-LIKE PROTEIN 1,WHSC1-LIKE COMPND 7 PROTEIN 1; COMPND 8 EC: 2.1.1.43; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: ACE-GLY-VAL-NLE-ARG-ILE-NH2; COMPND 12 CHAIN: D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NSD3, WHSC1L1, DC28; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS HISTONE-LYSINE N-METHYLTRANSFERASE NSD3, TRANSFERASE, TRANSFERASE- KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.A.BORIACK-SJODIN,K.SWINGER,N.A.FARROW REVDAT 3 16-OCT-24 6CEN 1 REMARK REVDAT 2 23-MAY-18 6CEN 1 JRNL REVDAT 1 09-MAY-18 6CEN 0 JRNL AUTH M.J.MORRISON,P.A.BORIACK-SJODIN,K.K.SWINGER,T.J.WIGLE, JRNL AUTH 2 D.SADALGE,K.W.KUNTZ,M.P.SCOTT,W.P.JANZEN,R.CHESWORTH, JRNL AUTH 3 K.W.DUNCAN,D.M.HARVEY,J.W.LAMPE,L.H.MITCHELL,R.A.COPELAND JRNL TITL IDENTIFICATION OF A PEPTIDE INHIBITOR FOR THE HISTONE JRNL TITL 2 METHYLTRANSFERASE WHSC1. JRNL REF PLOS ONE V. 13 97082 2018 JRNL REFN ESSN 1932-6203 JRNL PMID 29742153 JRNL DOI 10.1371/JOURNAL.PONE.0197082 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 28299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1491 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.65 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1820 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1836 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 226 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.99000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -1.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.098 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.109 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1948 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1857 ; 0.020 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2627 ; 1.644 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4274 ; 1.766 ; 3.005 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 240 ; 6.241 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;30.380 ;24.105 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 351 ;14.623 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;16.798 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 279 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2205 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 450 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6CEN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1000232598. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29790 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 46.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 3.720 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.5, 20% W/V REMARK 280 PEG5000MME, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.33000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1267 REMARK 465 ASN A 1268 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1445 O HOH A 1465 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY D 1 N - CA - C ANGL. DEV. = -24.6 DEGREES REMARK 500 GLY D 1 CA - C - O ANGL. DEV. = 15.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A1063 76.71 -65.51 REMARK 500 ASN A1136 51.24 -118.73 REMARK 500 ASN A1217 -161.57 -116.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1098 SG REMARK 620 2 CYS A1100 SG 108.3 REMARK 620 3 CYS A1108 SG 105.2 103.1 REMARK 620 4 CYS A1114 SG 116.1 109.5 113.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1108 SG REMARK 620 2 CYS A1123 SG 116.5 REMARK 620 3 CYS A1128 SG 101.1 115.0 REMARK 620 4 CYS A1134 SG 108.7 101.4 114.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1226 SG REMARK 620 2 CYS A1273 SG 116.9 REMARK 620 3 CYS A1275 SG 106.1 106.2 REMARK 620 4 CYS A1280 SG 108.8 108.2 110.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1304 DBREF 6CEN A 1058 1285 UNP Q9BZ95 NSD3_HUMAN 1058 1285 DBREF 6CEN D 0 6 PDB 6CEN 6CEN 0 6 SEQRES 1 A 228 LYS GLU ALA LEU GLU ILE GLU LYS ASN SER ARG LYS PRO SEQRES 2 A 228 PRO PRO TYR LYS HIS ILE LYS ALA ASN LYS VAL ILE GLY SEQRES 3 A 228 LYS VAL GLN ILE GLN VAL ALA ASP LEU SER GLU ILE PRO SEQRES 4 A 228 ARG CYS ASN CYS LYS PRO ALA ASP GLU ASN PRO CYS GLY SEQRES 5 A 228 LEU GLU SER GLU CYS LEU ASN ARG MET LEU GLN TYR GLU SEQRES 6 A 228 CYS HIS PRO GLN VAL CYS PRO ALA GLY ASP ARG CYS GLN SEQRES 7 A 228 ASN GLN CYS PHE THR LYS ARG LEU TYR PRO ASP ALA GLU SEQRES 8 A 228 ILE ILE LYS THR GLU ARG ARG GLY TRP GLY LEU ARG THR SEQRES 9 A 228 LYS ARG SER ILE LYS LYS GLY GLU PHE VAL ASN GLU TYR SEQRES 10 A 228 VAL GLY GLU LEU ILE ASP GLU GLU GLU CYS ARG LEU ARG SEQRES 11 A 228 ILE LYS ARG ALA HIS GLU ASN SER VAL THR ASN PHE TYR SEQRES 12 A 228 MET LEU THR VAL THR LYS ASP ARG ILE ILE ASP ALA GLY SEQRES 13 A 228 PRO LYS GLY ASN TYR SER ARG PHE MET ASN HIS SER CYS SEQRES 14 A 228 ASN PRO ASN CYS GLU THR GLN LYS TRP THR VAL ASN GLY SEQRES 15 A 228 ASP VAL ARG VAL GLY LEU PHE ALA LEU CYS ASP ILE PRO SEQRES 16 A 228 ALA GLY MET GLU LEU THR PHE ASN TYR ASN LEU ASP CYS SEQRES 17 A 228 LEU GLY ASN GLY ARG THR GLU CYS HIS CYS GLY ALA ASP SEQRES 18 A 228 ASN CYS SER GLY PHE LEU GLY SEQRES 1 D 7 ACE GLY VAL NLE ARG ILE NH2 HET ACE D 0 3 HET NLE D 3 8 HET NH2 D 6 1 HET SAM A1301 27 HET ZN A1302 1 HET ZN A1303 1 HET ZN A1304 1 HETNAM ACE ACETYL GROUP HETNAM NLE NORLEUCINE HETNAM NH2 AMINO GROUP HETNAM SAM S-ADENOSYLMETHIONINE HETNAM ZN ZINC ION FORMUL 2 ACE C2 H4 O FORMUL 2 NLE C6 H13 N O2 FORMUL 2 NH2 H2 N FORMUL 3 SAM C15 H22 N6 O5 S FORMUL 4 ZN 3(ZN 2+) FORMUL 7 HOH *226(H2 O) HELIX 1 AA1 ASP A 1091 ILE A 1095 5 5 HELIX 2 AA2 CYS A 1114 LEU A 1119 1 6 HELIX 3 AA3 ALA A 1130 CYS A 1134 5 5 HELIX 4 AA4 GLN A 1137 ARG A 1142 1 6 HELIX 5 AA5 ASP A 1180 ASN A 1194 1 15 HELIX 6 AA6 ASN A 1217 MET A 1222 5 6 SHEET 1 AA1 2 LYS A1074 HIS A1075 0 SHEET 2 AA1 2 LYS A1215 GLY A1216 1 O GLY A1216 N LYS A1074 SHEET 1 AA2 5 LYS A1080 VAL A1081 0 SHEET 2 AA2 5 GLU A1177 ILE A1179 1 O LEU A1178 N LYS A1080 SHEET 3 AA2 5 ARG A1208 ASP A1211 -1 O ASP A1211 N GLU A1177 SHEET 4 AA2 5 MET A1201 THR A1205 -1 N LEU A1202 O ILE A1210 SHEET 5 AA2 5 NLE D 3 ARG D 4 1 O NLE D 3 N MET A1201 SHEET 1 AA3 2 ALA A1147 LYS A1151 0 SHEET 2 AA3 2 TRP A1157 THR A1161 -1 O GLY A1158 N ILE A1150 SHEET 1 AA4 3 PHE A1170 TYR A1174 0 SHEET 2 AA4 3 ASP A1240 ALA A1247 -1 O LEU A1245 N VAL A1171 SHEET 3 AA4 3 CYS A1230 VAL A1237 -1 N TRP A1235 O ARG A1242 SHEET 1 AA5 2 ASN A1223 HIS A1224 0 SHEET 2 AA5 2 THR A1258 PHE A1259 1 O PHE A1259 N ASN A1223 LINK C ACE D 0 N GLY D 1 1555 1555 1.32 LINK C VAL D 2 N NLE D 3 1555 1555 1.34 LINK C NLE D 3 N ARG D 4 1555 1555 1.32 LINK C ILE D 5 N NH2 D 6 1555 1555 1.28 LINK SG CYS A1098 ZN ZN A1302 1555 1555 2.32 LINK SG CYS A1100 ZN ZN A1302 1555 1555 2.35 LINK SG CYS A1108 ZN ZN A1302 1555 1555 2.31 LINK SG CYS A1108 ZN ZN A1303 1555 1555 2.34 LINK SG CYS A1114 ZN ZN A1302 1555 1555 2.33 LINK SG CYS A1123 ZN ZN A1303 1555 1555 2.32 LINK SG CYS A1128 ZN ZN A1303 1555 1555 2.29 LINK SG CYS A1134 ZN ZN A1303 1555 1555 2.31 LINK SG CYS A1226 ZN ZN A1304 1555 1555 2.34 LINK SG CYS A1273 ZN ZN A1304 1555 1555 2.34 LINK SG CYS A1275 ZN ZN A1304 1555 1555 2.35 LINK SG CYS A1280 ZN ZN A1304 1555 1555 2.31 SITE 1 AC1 21 ARG A1155 GLY A1156 TRP A1157 THR A1197 SITE 2 AC1 21 ASN A1198 PHE A1199 TYR A1200 ARG A1220 SITE 3 AC1 21 ASN A1223 HIS A1224 TYR A1261 GLU A1272 SITE 4 AC1 21 CYS A1273 HIS A1274 LEU A1284 HOH A1439 SITE 5 AC1 21 HOH A1446 HOH A1447 HOH A1486 HOH A1488 SITE 6 AC1 21 HOH A1524 SITE 1 AC2 4 CYS A1098 CYS A1100 CYS A1108 CYS A1114 SITE 1 AC3 4 CYS A1108 CYS A1123 CYS A1128 CYS A1134 SITE 1 AC4 4 CYS A1226 CYS A1273 CYS A1275 CYS A1280 CRYST1 42.870 62.660 48.600 90.00 107.92 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023326 0.000000 0.007543 0.00000 SCALE2 0.000000 0.015959 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021625 0.00000