HEADER ISOMERASE 17-FEB-18 6CFV TITLE STRUCTURE OF HUMAN ALPHA-PHOSPHOMANNOMUTASE 1 IN COMPLEX WITH INOSINE TITLE 2 MONOPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOMANNOMUTASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PMM 1,PMMH-22; COMPND 5 EC: 5.4.2.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PMM1, PMMH22; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHATASE, HALOALKANOATE DEHALOGENASE SUPERFAMILY, MUTASE, KEYWDS 2 ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.JI,D.DUNAWAY-MARIANO,K.N.ALLEN REVDAT 5 04-OCT-23 6CFV 1 REMARK LINK REVDAT 4 27-NOV-19 6CFV 1 REMARK REVDAT 3 04-JUL-18 6CFV 1 JRNL REVDAT 2 23-MAY-18 6CFV 1 JRNL REVDAT 1 09-MAY-18 6CFV 0 JRNL AUTH T.JI,C.ZHANG,L.ZHENG,D.DUNAWAY-MARIANO,K.N.ALLEN JRNL TITL STRUCTURAL BASIS OF THE MOLECULAR SWITCH BETWEEN PHOSPHATASE JRNL TITL 2 AND MUTASE FUNCTIONS OF HUMAN PHOSPHOMANNOMUTASE 1 UNDER JRNL TITL 3 ISCHEMIC CONDITIONS. JRNL REF BIOCHEMISTRY V. 57 3480 2018 JRNL REFN ISSN 1520-4995 JRNL PMID 29695157 JRNL DOI 10.1021/ACS.BIOCHEM.8B00223 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 23000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.570 REMARK 3 FREE R VALUE TEST SET COUNT : 1970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.8888 - 4.6188 0.99 1711 160 0.1728 0.2399 REMARK 3 2 4.6188 - 3.6673 1.00 1612 151 0.1447 0.1970 REMARK 3 3 3.6673 - 3.2041 0.99 1566 146 0.1718 0.2231 REMARK 3 4 3.2041 - 2.9113 1.00 1544 145 0.1799 0.1984 REMARK 3 5 2.9113 - 2.7027 0.99 1560 146 0.1927 0.2317 REMARK 3 6 2.7027 - 2.5435 0.99 1532 144 0.1820 0.2284 REMARK 3 7 2.5435 - 2.4161 0.99 1521 144 0.1810 0.2629 REMARK 3 8 2.4161 - 2.3110 0.98 1508 143 0.1844 0.2409 REMARK 3 9 2.3110 - 2.2220 0.99 1514 140 0.1743 0.2263 REMARK 3 10 2.2220 - 2.1453 0.98 1495 139 0.1688 0.2251 REMARK 3 11 2.1453 - 2.0783 0.97 1458 138 0.1744 0.2586 REMARK 3 12 2.0783 - 2.0189 0.98 1476 139 0.1722 0.2346 REMARK 3 13 2.0189 - 1.9657 0.94 1434 133 0.1925 0.2229 REMARK 3 14 1.9657 - 1.9178 0.73 1099 102 0.1999 0.2617 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2034 REMARK 3 ANGLE : 1.012 2741 REMARK 3 CHIRALITY : 0.077 293 REMARK 3 PLANARITY : 0.005 359 REMARK 3 DIHEDRAL : 13.650 771 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CFV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1000232082. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97917 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23377 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.918 REMARK 200 RESOLUTION RANGE LOW (A) : 34.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.3200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2FUC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% POLYETHYLENE GLYCOL 3350, 0.15 M REMARK 280 DL-MALATE, PH 7.0, 50 MM MGCL2, AND 8 MM BETA-MERCAPTOETHANOL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.24200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 26.08450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 26.08450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 160.86300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 26.08450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 26.08450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.62100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 26.08450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 26.08450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 160.86300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 26.08450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 26.08450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.62100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 107.24200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 450 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 585 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 VAL A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 GLN A 6 REMARK 465 ALA A 7 REMARK 465 ALA A 8 REMARK 465 ARG A 9 REMARK 465 ARG A 10 REMARK 465 LYS A 11 REMARK 465 GLU A 257 REMARK 465 THR A 258 REMARK 465 ALA A 259 REMARK 465 HIS A 260 REMARK 465 GLU A 261 REMARK 465 ALA A 262 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 58 CG CD REMARK 480 LYS A 72 CE REMARK 480 GLU A 148 CD REMARK 480 GLU A 155 OE2 REMARK 480 LYS A 165 NZ REMARK 480 ARG A 183 CB CG CD NE CZ NH1 NH2 REMARK 480 GLU A 194 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 95 O HOH A 401 1.79 REMARK 500 O HOH A 414 O HOH A 525 2.01 REMARK 500 O HOH A 570 O HOH A 609 2.07 REMARK 500 O HOH A 560 O HOH A 588 2.08 REMARK 500 O HOH A 436 O HOH A 615 2.09 REMARK 500 N HIS A 99 O HOH A 401 2.13 REMARK 500 O HOH A 581 O HOH A 620 2.16 REMARK 500 OE1 GLN A 248 O HOH A 402 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 587 O HOH A 665 5645 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 20 -70.98 -95.76 REMARK 500 ARG A 28 -1.37 69.14 REMARK 500 ARG A 125 -106.27 -127.03 REMARK 500 SER A 144 43.52 -83.71 REMARK 500 ASP A 197 -169.09 -74.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 687 DISTANCE = 6.01 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 19 OD2 REMARK 620 2 ASP A 21 O 90.4 REMARK 620 3 ASN A 218 OD1 87.9 86.7 REMARK 620 4 HOH A 421 O 91.5 171.5 85.1 REMARK 620 5 HOH A 440 O 89.6 98.6 174.1 89.7 REMARK 620 6 HOH A 444 O 175.6 88.1 87.9 89.4 94.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 168 OE1 REMARK 620 2 PHE A 230 O 112.4 REMARK 620 3 ASP A 232 O 111.7 8.0 REMARK 620 4 THR A 235 O 112.4 3.8 4.2 REMARK 620 5 THR A 235 OG1 108.1 5.2 6.4 4.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMP A 303 DBREF 6CFV A 1 262 UNP Q92871 PMM1_HUMAN 1 262 SEQRES 1 A 262 MET ALA VAL THR ALA GLN ALA ALA ARG ARG LYS GLU ARG SEQRES 2 A 262 VAL LEU CYS LEU PHE ASP VAL ASP GLY THR LEU THR PRO SEQRES 3 A 262 ALA ARG GLN LYS ILE ASP PRO GLU VAL ALA ALA PHE LEU SEQRES 4 A 262 GLN LYS LEU ARG SER ARG VAL GLN ILE GLY VAL VAL GLY SEQRES 5 A 262 GLY SER ASP TYR CYS LYS ILE ALA GLU GLN LEU GLY ASP SEQRES 6 A 262 GLY ASP GLU VAL ILE GLU LYS PHE ASP TYR VAL PHE ALA SEQRES 7 A 262 GLU ASN GLY THR VAL GLN TYR LYS HIS GLY ARG LEU LEU SEQRES 8 A 262 SER LYS GLN THR ILE GLN ASN HIS LEU GLY GLU GLU LEU SEQRES 9 A 262 LEU GLN ASP LEU ILE ASN PHE CYS LEU SER TYR MET ALA SEQRES 10 A 262 LEU LEU ARG LEU PRO LYS LYS ARG GLY THR PHE ILE GLU SEQRES 11 A 262 PHE ARG ASN GLY MET LEU ASN ILE SER PRO ILE GLY ARG SEQRES 12 A 262 SER CYS THR LEU GLU GLU ARG ILE GLU PHE SER GLU LEU SEQRES 13 A 262 ASP LYS LYS GLU LYS ILE ARG GLU LYS PHE VAL GLU ALA SEQRES 14 A 262 LEU LYS THR GLU PHE ALA GLY LYS GLY LEU ARG PHE SER SEQRES 15 A 262 ARG GLY GLY MET ILE SER PHE ASP VAL PHE PRO GLU GLY SEQRES 16 A 262 TRP ASP LYS ARG TYR CYS LEU ASP SER LEU ASP GLN ASP SEQRES 17 A 262 SER PHE ASP THR ILE HIS PHE PHE GLY ASN GLU THR SER SEQRES 18 A 262 PRO GLY GLY ASN ASP PHE GLU ILE PHE ALA ASP PRO ARG SEQRES 19 A 262 THR VAL GLY HIS SER VAL VAL SER PRO GLN ASP THR VAL SEQRES 20 A 262 GLN ARG CYS ARG GLU ILE PHE PHE PRO GLU THR ALA HIS SEQRES 21 A 262 GLU ALA HET MG A 301 1 HET MG A 302 1 HET IMP A 303 23 HETNAM MG MAGNESIUM ION HETNAM IMP INOSINIC ACID FORMUL 2 MG 2(MG 2+) FORMUL 4 IMP C10 H13 N4 O8 P FORMUL 5 HOH *287(H2 O) HELIX 1 AA1 ASP A 32 ARG A 43 1 12 HELIX 2 AA2 ASP A 55 GLY A 64 1 10 HELIX 3 AA3 GLU A 68 PHE A 73 1 6 HELIX 4 AA4 GLU A 79 THR A 82 5 4 HELIX 5 AA5 THR A 95 GLY A 101 1 7 HELIX 6 AA6 GLY A 101 LEU A 118 1 18 HELIX 7 AA7 THR A 146 LYS A 161 1 16 HELIX 8 AA8 LYS A 161 PHE A 174 1 14 HELIX 9 AA9 ASP A 197 TYR A 200 5 4 HELIX 10 AB1 CYS A 201 ASP A 206 1 6 HELIX 11 AB2 ASP A 226 ASP A 232 1 7 HELIX 12 AB3 SER A 242 PHE A 255 1 14 SHEET 1 AA1 7 ARG A 89 LEU A 90 0 SHEET 2 AA1 7 VAL A 83 LYS A 86 -1 N LYS A 86 O ARG A 89 SHEET 3 AA1 7 TYR A 75 ALA A 78 -1 N VAL A 76 O TYR A 85 SHEET 4 AA1 7 GLN A 47 VAL A 51 1 N VAL A 50 O PHE A 77 SHEET 5 AA1 7 VAL A 14 PHE A 18 1 N PHE A 18 O GLY A 49 SHEET 6 AA1 7 THR A 212 GLY A 217 1 O HIS A 214 N LEU A 17 SHEET 7 AA1 7 VAL A 236 SER A 239 1 O VAL A 236 N PHE A 215 SHEET 1 AA2 4 ILE A 129 PHE A 131 0 SHEET 2 AA2 4 LEU A 136 ILE A 138 -1 O ASN A 137 N GLU A 130 SHEET 3 AA2 4 PHE A 189 PRO A 193 -1 O PHE A 189 N ILE A 138 SHEET 4 AA2 4 LEU A 179 PHE A 181 -1 N ARG A 180 O PHE A 192 LINK OD2 ASP A 19 MG MG A 301 1555 1555 2.12 LINK O ASP A 21 MG MG A 301 1555 1555 2.09 LINK OE1 GLU A 168 MG MG A 302 1555 5655 2.35 LINK OD1 ASN A 218 MG MG A 301 1555 1555 2.12 LINK O PHE A 230 MG MG A 302 1555 1555 2.41 LINK O ASP A 232 MG MG A 302 1555 1555 2.28 LINK O THR A 235 MG MG A 302 1555 1555 2.29 LINK OG1 THR A 235 MG MG A 302 1555 1555 2.43 LINK MG MG A 301 O HOH A 421 1555 1555 2.16 LINK MG MG A 301 O HOH A 440 1555 1555 2.09 LINK MG MG A 301 O HOH A 444 1555 1555 2.20 SITE 1 AC1 6 ASP A 19 ASP A 21 ASN A 218 HOH A 421 SITE 2 AC1 6 HOH A 440 HOH A 444 SITE 1 AC2 5 GLU A 168 PHE A 230 ALA A 231 ASP A 232 SITE 2 AC2 5 THR A 235 SITE 1 AC3 17 ARG A 132 MET A 135 ASN A 137 ARG A 143 SITE 2 AC3 17 ARG A 150 SER A 182 GLY A 184 GLY A 185 SITE 3 AC3 17 MET A 186 ILE A 187 SER A 188 ASP A 190 SITE 4 AC3 17 ASN A 225 HOH A 429 HOH A 496 HOH A 506 SITE 5 AC3 17 HOH A 563 CRYST1 52.169 52.169 214.484 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019168 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019168 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004662 0.00000