data_6CG4 # _entry.id 6CG4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.321 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6CG4 WWPDB D_1000232690 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6CG4 _pdbx_database_status.recvd_initial_deposition_date 2018-02-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Salveson, P.J.' 1 ? 'Nowick, J.S.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Am. Chem. Soc.' _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 140 _citation.language ? _citation.page_first 5842 _citation.page_last 5852 _citation.title 'Controlling the Oligomerization State of A beta-Derived Peptides with Light.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.8b02658 _citation.pdbx_database_id_PubMed 29627987 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Salveson, P.J.' 1 ? primary 'Haerianardakani, S.' 2 ? primary 'Thuy-Boun, A.' 3 ? primary 'Kreutzer, A.G.' 4 ? primary 'Nowick, J.S.' 5 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6CG4 _cell.details ? _cell.formula_units_Z ? _cell.length_a 39.317 _cell.length_a_esd ? _cell.length_b 39.317 _cell.length_b_esd ? _cell.length_c 59.384 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 24 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CG4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ORN-CYS-VAL-PHE-PHE-CYS-GLU-ASP-ORN-ALA-ILE-ILE-EZY-LEU-ORN-VAL 1906.272 3 ? ? ? ? 2 non-polymer syn 'IODIDE ION' 126.904 10 ? ? ? ? 3 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 4 water nat water 18.015 21 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ORN)CVFFCED(ORN)AII(EZY)L(ORN)V' _entity_poly.pdbx_seq_one_letter_code_can ACVFFCEDAAIIXLAV _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ORN n 1 2 CYS n 1 3 VAL n 1 4 PHE n 1 5 PHE n 1 6 CYS n 1 7 GLU n 1 8 ASP n 1 9 ORN n 1 10 ALA n 1 11 ILE n 1 12 ILE n 1 13 EZY n 1 14 LEU n 1 15 ORN n 1 16 VAL n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 16 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6CG4 _struct_ref.pdbx_db_accession 6CG4 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6CG4 A 1 ? 16 ? 6CG4 1 ? 16 ? 1 16 2 1 6CG4 B 1 ? 16 ? 6CG4 1 ? 16 ? 1 16 3 1 6CG4 C 1 ? 16 ? 6CG4 1 ? 16 ? 1 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EZY non-polymer n 'N-[(2-nitrophenyl)methyl]glycine' 2-nitrobenzylglycine 'C9 H10 N2 O4' 210.187 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 ORN 'L-peptide linking' n L-ornithine ? 'C5 H12 N2 O2' 132.161 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6CG4 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.01 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 38.70 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 296.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.1 M sodium acetate pH 4.5 0.2 M sodium chloride 28% 2-methyl-2,4-pentanediol 0.1 M potassium iodide ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 150 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU SATURN 92' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-12-24 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6CG4 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.03 _reflns.d_resolution_low 32.8 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 5269 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 28.8 _reflns.pdbx_Rmerge_I_obs 0.096 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 33.1 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.03 _reflns_shell.d_res_low 2.08 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.241 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.994 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6CG4 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.083 _refine.ls_d_res_low 32.783 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5269 _refine.ls_number_reflns_R_free 268 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.86 _refine.ls_percent_reflns_R_free 9.74 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2105 _refine.ls_R_factor_R_free 0.2630 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2051 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.39 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 27.61 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.26 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 396 _refine_hist.pdbx_number_atoms_nucleic_acid 10 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 21 _refine_hist.number_atoms_total 435 _refine_hist.d_res_high 2.083 _refine_hist.d_res_low 32.783 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 ? 421 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.915 ? 563 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 26.122 ? 282 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.115 ? 63 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.002 ? 67 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.0832 2.2928 . . 132 1170 98.00 . . . 0.3117 . 0.2229 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2928 2.6244 . . 137 1165 98.00 . . . 0.3152 . 0.2298 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6244 3.3060 . . 115 1221 100.00 . . . 0.2616 . 0.2109 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.3060 32.7870 . . 129 1200 100.00 . . . 0.2277 . 0.1864 . . . . . . . . . . # _struct.entry_id 6CG4 _struct.title ;Covalently crosslinked trimer of a macrocyclic peptide derived from Abeta(17-36) - (ORN)LCVFFCED(ORN)AII(2-nitrobenzylglycine)L(ORN)V ; _struct.pdbx_descriptor ORN-CYS-VAL-PHE-PHE-CYS-GLU-ASP-ORN-ALA-ILE-ILE-EZY-LEU-ORN-VAL _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6CG4 _struct_keywords.text ;Amyloid, oligomer, Alzheimer's Disease, Abeta, NEUROPEPTIDE ; _struct_keywords.pdbx_keywords NEUROPEPTIDE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 3 ? N N N 2 ? O N N 4 ? P N N 4 ? Q N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 2 SG ? ? ? 1_555 C CYS 6 SG ? ? A CYS 2 C CYS 6 1_555 ? ? ? ? ? ? ? 2.028 ? disulf2 disulf ? ? A CYS 6 SG ? ? ? 1_555 B CYS 2 SG ? ? A CYS 6 B CYS 2 1_555 ? ? ? ? ? ? ? 2.033 ? disulf3 disulf ? ? B CYS 6 SG ? ? ? 1_555 C CYS 2 SG ? ? B CYS 6 C CYS 2 1_555 ? ? ? ? ? ? ? 2.034 ? covale1 covale both ? A ORN 1 NE ? ? ? 1_555 A VAL 16 C ? ? A ORN 1 A VAL 16 1_555 ? ? ? ? ? ? ? 1.377 ? covale2 covale both ? A ORN 1 C ? ? ? 1_555 A CYS 2 N ? ? A ORN 1 A CYS 2 1_555 ? ? ? ? ? ? ? 1.374 ? covale3 covale both ? A ASP 8 C ? ? ? 1_555 A ORN 9 NE ? ? A ASP 8 A ORN 9 1_555 ? ? ? ? ? ? ? 1.377 ? covale4 covale both ? A ORN 9 C ? ? ? 1_555 A ALA 10 N ? ? A ORN 9 A ALA 10 1_555 ? ? ? ? ? ? ? 1.372 ? covale5 covale one ? A ILE 12 C ? ? ? 1_555 A EZY 13 N ? ? A ILE 12 A EZY 13 1_555 ? ? ? ? ? ? ? 1.333 ? covale6 covale both ? A EZY 13 C ? ? ? 1_555 A LEU 14 N ? ? A EZY 13 A LEU 14 1_555 ? ? ? ? ? ? ? 1.329 ? covale7 covale both ? A LEU 14 C ? ? ? 1_555 A ORN 15 N ? ? A LEU 14 A ORN 15 1_555 ? ? ? ? ? ? ? 1.331 ? covale8 covale both ? A ORN 15 C ? ? ? 1_555 A VAL 16 N ? ? A ORN 15 A VAL 16 1_555 ? ? ? ? ? ? ? 1.379 ? covale9 covale both ? B ORN 1 NE ? ? ? 1_555 B VAL 16 C ? ? B ORN 1 B VAL 16 1_555 ? ? ? ? ? ? ? 1.378 ? covale10 covale both ? B ORN 1 C ? ? ? 1_555 B CYS 2 N ? ? B ORN 1 B CYS 2 1_555 ? ? ? ? ? ? ? 1.374 ? covale11 covale both ? B ASP 8 C ? ? ? 1_555 B ORN 9 NE ? ? B ASP 8 B ORN 9 1_555 ? ? ? ? ? ? ? 1.378 ? covale12 covale both ? B ORN 9 C ? ? ? 1_555 B ALA 10 N ? ? B ORN 9 B ALA 10 1_555 ? ? ? ? ? ? ? 1.374 ? covale13 covale one ? B ILE 12 C ? ? ? 1_555 B EZY 13 N ? ? B ILE 12 B EZY 13 1_555 ? ? ? ? ? ? ? 1.333 ? covale14 covale both ? B EZY 13 C ? ? ? 1_555 B LEU 14 N ? ? B EZY 13 B LEU 14 1_555 ? ? ? ? ? ? ? 1.329 ? covale15 covale both ? B LEU 14 C ? ? ? 1_555 B ORN 15 N ? ? B LEU 14 B ORN 15 1_555 ? ? ? ? ? ? ? 1.330 ? covale16 covale both ? B ORN 15 C ? ? ? 1_555 B VAL 16 N ? ? B ORN 15 B VAL 16 1_555 ? ? ? ? ? ? ? 1.369 ? covale17 covale both ? C ORN 1 NE ? ? ? 1_555 C VAL 16 C ? ? C ORN 1 C VAL 16 1_555 ? ? ? ? ? ? ? 1.377 ? covale18 covale both ? C ORN 1 C ? ? ? 1_555 C CYS 2 N ? ? C ORN 1 C CYS 2 1_555 ? ? ? ? ? ? ? 1.373 ? covale19 covale both ? C ASP 8 C ? ? ? 1_555 C ORN 9 NE ? ? C ASP 8 C ORN 9 1_555 ? ? ? ? ? ? ? 1.376 ? covale20 covale both ? C ORN 9 C ? ? ? 1_555 C ALA 10 N ? ? C ORN 9 C ALA 10 1_555 ? ? ? ? ? ? ? 1.372 ? covale21 covale one ? C ILE 12 C ? ? ? 1_555 C EZY 13 N ? ? C ILE 12 C EZY 13 1_555 ? ? ? ? ? ? ? 1.331 ? covale22 covale both ? C EZY 13 C ? ? ? 1_555 C LEU 14 N ? ? C EZY 13 C LEU 14 1_555 ? ? ? ? ? ? ? 1.331 ? covale23 covale both ? C LEU 14 C ? ? ? 1_555 C ORN 15 N ? ? C LEU 14 C ORN 15 1_555 ? ? ? ? ? ? ? 1.332 ? covale24 covale both ? C ORN 15 C ? ? ? 1_555 C VAL 16 N ? ? C ORN 15 C VAL 16 1_555 ? ? ? ? ? ? ? 1.367 ? covale25 covale both ? D IOD . I ? ? ? 1_555 E IOD . I ? ? A IOD 101 A IOD 102 1_555 ? ? ? ? ? ? ? 2.944 ? covale26 covale both ? D IOD . I ? ? ? 1_555 E IOD . I ? ? A IOD 101 A IOD 102 6_645 ? ? ? ? ? ? ? 2.943 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A IOD 104 ? 4 'binding site for residue IOD A 104' AC2 Software B IOD 101 ? 1 'binding site for residue IOD B 101' AC3 Software B IOD 102 ? 2 'binding site for residue IOD B 102' AC4 Software B IOD 103 ? 1 'binding site for residue IOD B 103' AC5 Software B IOD 104 ? 3 'binding site for residue IOD B 104' AC6 Software B IOD 105 ? 4 'binding site for residue IOD B 105' AC7 Software B MPD 106 ? 4 'binding site for residue MPD B 106' AC8 Software C IOD 101 ? 2 'binding site for residue IOD C 101' AC9 Software A IOD 101 ? 3 'binding site for residues IOD A 101 and IOD A 102' AD1 Software A IOD 101 ? 3 'binding site for residues IOD A 101 and IOD A 102' AD2 Software B ORN 1 ? 10 'binding site for Di-peptide ORN B 1 and VAL B 16' AD3 Software B ORN 1 ? 10 'binding site for Di-peptide ORN B 1 and CYS B 2' AD4 Software B ASP 8 ? 6 'binding site for Di-peptide ASP B 8 and ORN B 9' AD5 Software B ORN 9 ? 7 'binding site for Di-peptide ORN B 9 and ALA B 10' AD6 Software B ILE 12 ? 8 'binding site for Di-peptide ILE B 12 and EZY B 13' AD7 Software B EZY 13 ? 9 'binding site for Di-peptide EZY B 13 and LEU B 14' AD8 Software B LEU 14 ? 8 'binding site for Di-peptide LEU B 14 and ORN B 15' AD9 Software B ORN 15 ? 6 'binding site for Di-peptide ORN B 15 and VAL B 16' AE1 Software C ORN 1 ? 12 'binding site for Di-peptide ORN C 1 and CYS C 2' AE2 Software C ORN 1 ? 10 'binding site for Di-peptide ORN C 1 and VAL C 16' AE3 Software C ASP 8 ? 11 'binding site for Di-peptide ASP C 8 and ORN C 9' AE4 Software C ORN 9 ? 10 'binding site for Di-peptide ORN C 9 and ALA C 10' AE5 Software C ILE 12 ? 10 'binding site for Di-peptide ILE C 12 and EZY C 13' AE6 Software C EZY 13 ? 13 'binding site for Di-peptide EZY C 13 and LEU C 14' AE7 Software C LEU 14 ? 11 'binding site for Di-peptide LEU C 14 and ORN C 15' AE8 Software C ORN 15 ? 8 'binding site for Di-peptide ORN C 15 and VAL C 16' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ORN A 1 ? ORN A 1 . ? 7_544 ? 2 AC1 4 HOH O . ? HOH A 206 . ? 7_544 ? 3 AC1 4 ILE C 12 ? ILE C 12 . ? 6_645 ? 4 AC1 4 EZY C 13 ? EZY C 13 . ? 6_645 ? 5 AC2 1 ILE A 11 ? ILE A 11 . ? 1_555 ? 6 AC3 2 EZY C 13 ? EZY C 13 . ? 6_655 ? 7 AC3 2 HOH Q . ? HOH C 201 . ? 6_655 ? 8 AC4 1 ILE B 12 ? ILE B 12 . ? 1_555 ? 9 AC5 3 HOH O . ? HOH A 205 . ? 7_544 ? 10 AC5 3 GLU B 7 ? GLU B 7 . ? 6_655 ? 11 AC5 3 ORN B 9 ? ORN B 9 . ? 6_655 ? 12 AC6 4 ORN B 9 ? ORN B 9 . ? 8_655 ? 13 AC6 4 ORN C 9 ? ORN C 9 . ? 7_554 ? 14 AC6 4 IOD N . ? IOD C 101 . ? 7_554 ? 15 AC6 4 HOH Q . ? HOH C 208 . ? 7_554 ? 16 AC7 4 CYS A 6 ? CYS A 6 . ? 7_544 ? 17 AC7 4 LEU A 14 ? LEU A 14 . ? 7_544 ? 18 AC7 4 EZY B 13 ? EZY B 13 . ? 1_555 ? 19 AC7 4 HOH P . ? HOH B 203 . ? 1_555 ? 20 AC8 2 ORN B 9 ? ORN B 9 . ? 2_545 ? 21 AC8 2 IOD L . ? IOD B 105 . ? 8_555 ? 22 AC9 3 ORN A 1 ? ORN A 1 . ? 1_555 ? 23 AC9 3 ORN A 15 ? ORN A 15 . ? 1_555 ? 24 AC9 3 ORN A 15 ? ORN A 15 . ? 6_645 ? 25 AD1 3 ORN A 1 ? ORN A 1 . ? 1_555 ? 26 AD1 3 ORN A 15 ? ORN A 15 . ? 1_555 ? 27 AD1 3 ORN A 15 ? ORN A 15 . ? 6_645 ? 28 AD2 10 CYS A 6 ? CYS A 6 . ? 1_555 ? 29 AD2 10 GLU A 7 ? GLU A 7 . ? 1_555 ? 30 AD2 10 CYS B 2 ? CYS B 2 . ? 1_555 ? 31 AD2 10 PHE B 4 ? PHE B 4 . ? 1_555 ? 32 AD2 10 EZY B 13 ? EZY B 13 . ? 8_655 ? 33 AD2 10 LEU B 14 ? LEU B 14 . ? 1_555 ? 34 AD2 10 ORN B 15 ? ORN B 15 . ? 1_555 ? 35 AD2 10 HOH P . ? HOH B 203 . ? 8_655 ? 36 AD2 10 HOH P . ? HOH B 204 . ? 1_555 ? 37 AD2 10 ORN C 1 ? ORN C 1 . ? 6_655 ? 38 AD3 10 PHE A 5 ? PHE A 5 . ? 1_555 ? 39 AD3 10 CYS A 6 ? CYS A 6 . ? 1_555 ? 40 AD3 10 GLU A 7 ? GLU A 7 . ? 1_555 ? 41 AD3 10 VAL B 3 ? VAL B 3 . ? 1_555 ? 42 AD3 10 EZY B 13 ? EZY B 13 . ? 8_655 ? 43 AD3 10 LEU B 14 ? LEU B 14 . ? 1_555 ? 44 AD3 10 VAL B 16 ? VAL B 16 . ? 1_555 ? 45 AD3 10 HOH P . ? HOH B 203 . ? 8_655 ? 46 AD3 10 HOH P . ? HOH B 204 . ? 1_555 ? 47 AD3 10 ORN C 1 ? ORN C 1 . ? 6_655 ? 48 AD4 6 GLU B 7 ? GLU B 7 . ? 1_555 ? 49 AD4 6 ALA B 10 ? ALA B 10 . ? 1_555 ? 50 AD4 6 IOD K . ? IOD B 104 . ? 6_655 ? 51 AD4 6 IOD L . ? IOD B 105 . ? 7_544 ? 52 AD4 6 ORN C 15 ? ORN C 15 . ? 4_554 ? 53 AD4 6 IOD N . ? IOD C 101 . ? 2_544 ? 54 AD5 7 GLU B 7 ? GLU B 7 . ? 1_555 ? 55 AD5 7 ASP B 8 ? ASP B 8 . ? 1_555 ? 56 AD5 7 ILE B 11 ? ILE B 11 . ? 1_555 ? 57 AD5 7 IOD K . ? IOD B 104 . ? 6_655 ? 58 AD5 7 IOD L . ? IOD B 105 . ? 7_544 ? 59 AD5 7 ORN C 15 ? ORN C 15 . ? 4_554 ? 60 AD5 7 IOD N . ? IOD C 101 . ? 2_544 ? 61 AD6 8 ORN B 1 ? ORN B 1 . ? 7_544 ? 62 AD6 8 PHE B 4 ? PHE B 4 . ? 1_555 ? 63 AD6 8 PHE B 5 ? PHE B 5 . ? 1_555 ? 64 AD6 8 CYS B 6 ? CYS B 6 . ? 1_555 ? 65 AD6 8 ILE B 11 ? ILE B 11 . ? 1_555 ? 66 AD6 8 LEU B 14 ? LEU B 14 . ? 1_555 ? 67 AD6 8 IOD J . ? IOD B 103 . ? 1_555 ? 68 AD6 8 MPD M . ? MPD B 106 . ? 1_555 ? 69 AD7 9 ORN B 1 ? ORN B 1 . ? 7_544 ? 70 AD7 9 CYS B 2 ? CYS B 2 . ? 1_555 ? 71 AD7 9 VAL B 3 ? VAL B 3 . ? 1_555 ? 72 AD7 9 PHE B 4 ? PHE B 4 . ? 1_555 ? 73 AD7 9 ILE B 11 ? ILE B 11 . ? 1_555 ? 74 AD7 9 ILE B 12 ? ILE B 12 . ? 1_555 ? 75 AD7 9 ORN B 15 ? ORN B 15 . ? 1_555 ? 76 AD7 9 VAL B 16 ? VAL B 16 . ? 1_555 ? 77 AD7 9 MPD M . ? MPD B 106 . ? 1_555 ? 78 AD8 8 CYS B 2 ? CYS B 2 . ? 1_555 ? 79 AD8 8 VAL B 3 ? VAL B 3 . ? 1_555 ? 80 AD8 8 PHE B 4 ? PHE B 4 . ? 1_555 ? 81 AD8 8 ILE B 12 ? ILE B 12 . ? 1_555 ? 82 AD8 8 EZY B 13 ? EZY B 13 . ? 1_555 ? 83 AD8 8 VAL B 16 ? VAL B 16 . ? 1_555 ? 84 AD8 8 HOH P . ? HOH B 202 . ? 1_555 ? 85 AD8 8 ORN C 1 ? ORN C 1 . ? 6_655 ? 86 AD9 6 ORN B 1 ? ORN B 1 . ? 1_555 ? 87 AD9 6 CYS B 2 ? CYS B 2 . ? 1_555 ? 88 AD9 6 PHE B 4 ? PHE B 4 . ? 1_555 ? 89 AD9 6 LEU B 14 ? LEU B 14 . ? 1_555 ? 90 AD9 6 HOH P . ? HOH B 202 . ? 1_555 ? 91 AD9 6 ORN C 1 ? ORN C 1 . ? 6_655 ? 92 AE1 12 ORN B 1 ? ORN B 1 . ? 6_655 ? 93 AE1 12 PHE B 5 ? PHE B 5 . ? 1_555 ? 94 AE1 12 CYS B 6 ? CYS B 6 . ? 1_555 ? 95 AE1 12 GLU B 7 ? GLU B 7 . ? 1_555 ? 96 AE1 12 ILE B 11 ? ILE B 11 . ? 3_545 ? 97 AE1 12 ORN B 15 ? ORN B 15 . ? 6_655 ? 98 AE1 12 HOH P . ? HOH B 202 . ? 6_655 ? 99 AE1 12 VAL C 3 ? VAL C 3 . ? 1_555 ? 100 AE1 12 PHE C 4 ? PHE C 4 . ? 1_555 ? 101 AE1 12 LEU C 14 ? LEU C 14 . ? 1_555 ? 102 AE1 12 ORN C 15 ? ORN C 15 . ? 1_555 ? 103 AE1 12 VAL C 16 ? VAL C 16 . ? 1_555 ? 104 AE2 10 ORN B 1 ? ORN B 1 . ? 6_655 ? 105 AE2 10 CYS B 6 ? CYS B 6 . ? 1_555 ? 106 AE2 10 GLU B 7 ? GLU B 7 . ? 1_555 ? 107 AE2 10 ILE B 11 ? ILE B 11 . ? 3_545 ? 108 AE2 10 ORN B 15 ? ORN B 15 . ? 6_655 ? 109 AE2 10 HOH P . ? HOH B 202 . ? 6_655 ? 110 AE2 10 CYS C 2 ? CYS C 2 . ? 1_555 ? 111 AE2 10 PHE C 4 ? PHE C 4 . ? 1_555 ? 112 AE2 10 LEU C 14 ? LEU C 14 . ? 1_555 ? 113 AE2 10 ORN C 15 ? ORN C 15 . ? 1_555 ? 114 AE3 11 GLU A 7 ? GLU A 7 . ? 3_535 ? 115 AE3 11 ORN A 9 ? ORN A 9 . ? 3_535 ? 116 AE3 11 ORN A 15 ? ORN A 15 . ? 6_645 ? 117 AE3 11 IOD L . ? IOD B 105 . ? 8_555 ? 118 AE3 11 CYS C 6 ? CYS C 6 . ? 1_555 ? 119 AE3 11 GLU C 7 ? GLU C 7 . ? 1_555 ? 120 AE3 11 ALA C 10 ? ALA C 10 . ? 1_555 ? 121 AE3 11 ILE C 11 ? ILE C 11 . ? 1_555 ? 122 AE3 11 ORN C 15 ? ORN C 15 . ? 3_545 ? 123 AE3 11 HOH Q . ? HOH C 204 . ? 1_555 ? 124 AE3 11 HOH Q . ? HOH C 206 . ? 1_555 ? 125 AE4 10 GLU A 7 ? GLU A 7 . ? 3_535 ? 126 AE4 10 ORN A 9 ? ORN A 9 . ? 3_535 ? 127 AE4 10 ILE A 12 ? ILE A 12 . ? 6_645 ? 128 AE4 10 EZY A 13 ? EZY A 13 . ? 6_645 ? 129 AE4 10 ORN A 15 ? ORN A 15 . ? 6_645 ? 130 AE4 10 IOD L . ? IOD B 105 . ? 8_555 ? 131 AE4 10 GLU C 7 ? GLU C 7 . ? 1_555 ? 132 AE4 10 ASP C 8 ? ASP C 8 . ? 1_555 ? 133 AE4 10 ILE C 11 ? ILE C 11 . ? 1_555 ? 134 AE4 10 HOH Q . ? HOH C 204 . ? 1_555 ? 135 AE5 10 ORN A 1 ? ORN A 1 . ? 4_554 ? 136 AE5 10 EZY A 13 ? EZY A 13 . ? 6_645 ? 137 AE5 10 IOD G . ? IOD A 104 . ? 6_645 ? 138 AE5 10 IOD I . ? IOD B 102 . ? 6_655 ? 139 AE5 10 PHE C 4 ? PHE C 4 . ? 1_555 ? 140 AE5 10 PHE C 5 ? PHE C 5 . ? 1_555 ? 141 AE5 10 CYS C 6 ? CYS C 6 . ? 1_555 ? 142 AE5 10 ILE C 11 ? ILE C 11 . ? 1_555 ? 143 AE5 10 LEU C 14 ? LEU C 14 . ? 1_555 ? 144 AE5 10 HOH Q . ? HOH C 201 . ? 1_555 ? 145 AE6 13 ORN A 1 ? ORN A 1 . ? 4_554 ? 146 AE6 13 EZY A 13 ? EZY A 13 . ? 6_645 ? 147 AE6 13 IOD G . ? IOD A 104 . ? 6_645 ? 148 AE6 13 IOD I . ? IOD B 102 . ? 6_655 ? 149 AE6 13 CYS C 2 ? CYS C 2 . ? 1_555 ? 150 AE6 13 VAL C 3 ? VAL C 3 . ? 1_555 ? 151 AE6 13 PHE C 4 ? PHE C 4 . ? 1_555 ? 152 AE6 13 PHE C 5 ? PHE C 5 . ? 1_555 ? 153 AE6 13 ILE C 11 ? ILE C 11 . ? 1_555 ? 154 AE6 13 ILE C 12 ? ILE C 12 . ? 1_555 ? 155 AE6 13 ORN C 15 ? ORN C 15 . ? 1_555 ? 156 AE6 13 VAL C 16 ? VAL C 16 . ? 1_555 ? 157 AE6 13 HOH Q . ? HOH C 201 . ? 1_555 ? 158 AE7 11 ORN B 9 ? ORN B 9 . ? 3_545 ? 159 AE7 11 ALA B 10 ? ALA B 10 . ? 3_545 ? 160 AE7 11 ILE B 11 ? ILE B 11 . ? 3_545 ? 161 AE7 11 ORN C 1 ? ORN C 1 . ? 1_555 ? 162 AE7 11 CYS C 2 ? CYS C 2 . ? 1_555 ? 163 AE7 11 VAL C 3 ? VAL C 3 . ? 1_555 ? 164 AE7 11 PHE C 4 ? PHE C 4 . ? 1_555 ? 165 AE7 11 ASP C 8 ? ASP C 8 . ? 4_554 ? 166 AE7 11 ILE C 12 ? ILE C 12 . ? 1_555 ? 167 AE7 11 EZY C 13 ? EZY C 13 . ? 1_555 ? 168 AE7 11 VAL C 16 ? VAL C 16 . ? 1_555 ? 169 AE8 8 ORN B 9 ? ORN B 9 . ? 3_545 ? 170 AE8 8 ALA B 10 ? ALA B 10 . ? 3_545 ? 171 AE8 8 ILE B 11 ? ILE B 11 . ? 3_545 ? 172 AE8 8 ORN C 1 ? ORN C 1 . ? 1_555 ? 173 AE8 8 CYS C 2 ? CYS C 2 . ? 1_555 ? 174 AE8 8 PHE C 4 ? PHE C 4 . ? 1_555 ? 175 AE8 8 ASP C 8 ? ASP C 8 . ? 4_554 ? 176 AE8 8 LEU C 14 ? LEU C 14 . ? 1_555 ? # _atom_sites.entry_id 6CG4 _atom_sites.fract_transf_matrix[1][1] 0.025434 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025434 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016840 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H I N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ORN 1 1 1 ORN ORN A . n A 1 2 CYS 2 2 2 CYS CYS A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 CYS 6 6 6 CYS CYS A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 ORN 9 9 9 ORN ORN A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 EZY 13 13 13 EZY 2NB A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 ORN 15 15 15 ORN ORN A . n A 1 16 VAL 16 16 16 VAL VAL A . n B 1 1 ORN 1 1 1 ORN ORN B . n B 1 2 CYS 2 2 2 CYS CYS B . n B 1 3 VAL 3 3 3 VAL VAL B . n B 1 4 PHE 4 4 4 PHE PHE B . n B 1 5 PHE 5 5 5 PHE PHE B . n B 1 6 CYS 6 6 6 CYS CYS B . n B 1 7 GLU 7 7 7 GLU GLU B . n B 1 8 ASP 8 8 8 ASP ASP B . n B 1 9 ORN 9 9 9 ORN ORN B . n B 1 10 ALA 10 10 10 ALA ALA B . n B 1 11 ILE 11 11 11 ILE ILE B . n B 1 12 ILE 12 12 12 ILE ILE B . n B 1 13 EZY 13 13 13 EZY 2NB B . n B 1 14 LEU 14 14 14 LEU LEU B . n B 1 15 ORN 15 15 15 ORN ORN B . n B 1 16 VAL 16 16 16 VAL VAL B . n C 1 1 ORN 1 1 1 ORN ORN C . n C 1 2 CYS 2 2 2 CYS CYS C . n C 1 3 VAL 3 3 3 VAL VAL C . n C 1 4 PHE 4 4 4 PHE PHE C . n C 1 5 PHE 5 5 5 PHE PHE C . n C 1 6 CYS 6 6 6 CYS CYS C . n C 1 7 GLU 7 7 7 GLU GLU C . n C 1 8 ASP 8 8 8 ASP ASP C . n C 1 9 ORN 9 9 9 ORN ORN C . n C 1 10 ALA 10 10 10 ALA ALA C . n C 1 11 ILE 11 11 11 ILE ILE C . n C 1 12 ILE 12 12 12 ILE ILE C . n C 1 13 EZY 13 13 13 EZY 2NB C . n C 1 14 LEU 14 14 14 LEU LEU C . n C 1 15 ORN 15 15 15 ORN ORN C . n C 1 16 VAL 16 16 16 VAL VAL C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 IOD 1 101 1 IOD I A . E 2 IOD 1 102 2 IOD I A . F 2 IOD 1 103 4 IOD I A . G 2 IOD 1 104 8 IOD I A . H 2 IOD 1 101 3 IOD I B . I 2 IOD 1 102 5 IOD I B . J 2 IOD 1 103 6 IOD I B . K 2 IOD 1 104 7 IOD I B . L 2 IOD 1 105 9 IOD I B . M 3 MPD 1 106 1 MPD MPD B . N 2 IOD 1 101 11 IOD I C . O 4 HOH 1 201 9 HOH HOH A . O 4 HOH 2 202 15 HOH HOH A . O 4 HOH 3 203 4 HOH HOH A . O 4 HOH 4 204 22 HOH HOH A . O 4 HOH 5 205 10 HOH HOH A . O 4 HOH 6 206 5 HOH HOH A . P 4 HOH 1 201 12 HOH HOH B . P 4 HOH 2 202 3 HOH HOH B . P 4 HOH 3 203 7 HOH HOH B . P 4 HOH 4 204 11 HOH HOH B . P 4 HOH 5 205 21 HOH HOH B . P 4 HOH 6 206 17 HOH HOH B . Q 4 HOH 1 201 18 HOH HOH C . Q 4 HOH 2 202 6 HOH HOH C . Q 4 HOH 3 203 2 HOH HOH C . Q 4 HOH 4 204 1 HOH HOH C . Q 4 HOH 5 205 8 HOH HOH C . Q 4 HOH 6 206 14 HOH HOH C . Q 4 HOH 7 207 20 HOH HOH C . Q 4 HOH 8 208 13 HOH HOH C . Q 4 HOH 9 209 16 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2170 ? 1 MORE -23 ? 1 'SSA (A^2)' 4170 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id IOD _pdbx_struct_special_symmetry.auth_seq_id 102 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id IOD _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-05-16 2 'Structure model' 1 1 2020-01-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Author supporting evidence' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category pdbx_audit_support # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_pdbx_audit_support.funding_organization' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 26.3181 -13.5325 -17.9916 0.1395 0.1368 0.0541 -0.0170 0.0304 -0.0481 0.1306 0.3440 0.2640 0.0525 0.1203 0.0771 0.0206 -0.1153 -0.6756 0.0089 -0.0098 0.0773 -0.0295 0.0579 0.0174 'X-RAY DIFFRACTION' 2 ? refined 19.9321 -5.1678 -27.4955 0.2797 0.1645 0.1497 -0.0134 -0.0602 0.0315 4.5704 2.6127 4.4121 1.5957 0.8453 1.0343 -0.0849 0.0368 0.1241 0.2044 0.3790 0.1451 -0.1211 -0.4498 -0.2212 'X-RAY DIFFRACTION' 3 ? refined 12.2778 -12.4634 -18.1216 0.1565 0.1521 0.2196 0.0359 0.0030 0.0234 0.1473 2.6221 3.3959 -0.5268 0.5903 -2.9808 0.2118 0.0499 -0.1848 0.1169 0.1156 0.5659 -0.1131 -0.0076 -0.0628 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 16 '( CHAIN A AND RESID 1:16 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 1 B 16 '( CHAIN B AND RESID 1:16 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C 1 C 16 '( CHAIN C AND RESID 1:16 )' ? ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.11.1_2575: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 PHE _pdbx_validate_close_contact.auth_seq_id_1 4 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 H _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 LEU _pdbx_validate_close_contact.auth_seq_id_2 14 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.58 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 I _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 IOD _pdbx_validate_symm_contact.auth_seq_id_1 105 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 C _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 208 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 7_554 _pdbx_validate_symm_contact.dist 2.15 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id ORN _pdbx_validate_main_chain_plane.auth_asym_id B _pdbx_validate_main_chain_plane.auth_seq_id 15 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -10.78 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM097562 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'IODIDE ION' IOD 3 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #