HEADER TRANSCRIPTION 22-FEB-18 6CHK TITLE CRYSTAL STRUCTURE OF LACI FAMILY TRANSCRIPTIONAL REGULATOR FROM TITLE 2 LACTOBACILLUS CASEI, TARGET EFI-512911, WITH BOUND TRIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, LACI FAMILY; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 54-333; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS PARACASEI; SOURCE 3 ORGANISM_TAXID: 321967; SOURCE 4 STRAIN: ATCC 334 / BCRC 17002 / CIP 107868 / KCTC 3260 / NRRL B-441; SOURCE 5 GENE: LSEI_2103; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TRANSCRIPTIONAL REGULATOR, LACTOBACILLUS CASEI, STRUCTURAL GENOMICS, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,I.G.SHABALIN,M.KOWIEL,P.J.POREBSKI,W.MINOR, AUTHOR 2 M.JASKOLSKI,R.BHOSLE,N.AL OBAIDI,S.CHAMALA,J.D.ATTONITO,A.SCOTT AUTHOR 3 GLENN,S.CHOWDHURY,J.LAFLEUR,R.D.SIEDEL,B.HILLERICH,J.LOVE, AUTHOR 4 K.L.WHALEN,J.A.GERLT,S.C.ALMO,E.F.I.ENZYME FUNCTION INITIATIVE REVDAT 6 13-MAR-24 6CHK 1 LINK REVDAT 5 27-NOV-19 6CHK 1 JRNL REVDAT 4 20-FEB-19 6CHK 1 JRNL REVDAT 3 26-DEC-18 6CHK 1 JRNL REVDAT 2 17-OCT-18 6CHK 1 JRNL REVDAT 1 07-MAR-18 6CHK 0 SPRSDE 07-MAR-18 6CHK 4RK3 JRNL AUTH M.KOWIEL,D.BRZEZINSKI,P.J.POREBSKI,I.G.SHABALIN,M.JASKOLSKI, JRNL AUTH 2 W.MINOR JRNL TITL AUTOMATIC RECOGNITION OF LIGANDS IN ELECTRON DENSITY BY JRNL TITL 2 MACHINE LEARNING. JRNL REF BIOINFORMATICS V. 35 452 2019 JRNL REFN ESSN 1367-4811 JRNL PMID 30016407 JRNL DOI 10.1093/BIOINFORMATICS/BTY626 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 25794 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.900 REMARK 3 FREE R VALUE TEST SET COUNT : 775 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1903 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.2100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2062 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 315 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.16000 REMARK 3 B22 (A**2) : -1.16000 REMARK 3 B33 (A**2) : 3.76000 REMARK 3 B12 (A**2) : -0.58000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.677 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2165 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2037 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2954 ; 1.633 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4717 ; 0.990 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 282 ; 6.185 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 101 ;34.617 ;24.158 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 350 ;12.420 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;14.444 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 344 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2442 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 433 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 59 A 333 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5510 24.3330 17.5940 REMARK 3 T TENSOR REMARK 3 T11: 0.0891 T22: 0.1199 REMARK 3 T33: 0.0146 T12: -0.0143 REMARK 3 T13: 0.0165 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.0454 L22: 1.4808 REMARK 3 L33: 0.7018 L12: -0.7640 REMARK 3 L13: 0.4052 L23: -0.4812 REMARK 3 S TENSOR REMARK 3 S11: 0.0330 S12: 0.0449 S13: -0.0978 REMARK 3 S21: 0.0033 S22: 0.0051 S23: 0.0861 REMARK 3 S31: 0.0204 S32: -0.0681 S33: -0.0380 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.30 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6CHK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1000232770. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26573 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : 0.10500 REMARK 200 FOR THE DATA SET : 30.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN IN 10 MM BIS-TRIS, 500 MM REMARK 280 SODIUM CHLORIDE, 10% GLYCEROL, 5 MM DTT, TEV PROTEASE (1:100 REMARK 280 RATIO), RESERVOIR: 0.17 M SODIUM ACETATE, 0.085 M TRIS-HCL, PH REMARK 280 8.5, 25.5% W/V PEG4000, 15% W/V GLYCEROL, CRYOPROTECTANT = REMARK 280 RESERVOIR, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 54.35750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 31.38332 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 41.79833 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 54.35750 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 31.38332 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 41.79833 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 54.35750 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 31.38332 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 41.79833 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 54.35750 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 31.38332 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 41.79833 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 54.35750 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 31.38332 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 41.79833 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 54.35750 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 31.38332 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 41.79833 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 62.76663 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 83.59667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 62.76663 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 83.59667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 62.76663 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 83.59667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 62.76663 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 83.59667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 62.76663 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 83.59667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 62.76663 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 83.59667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 54.35750 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 31.38332 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 41.79833 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 52 REMARK 465 MET A 53 REMARK 465 LEU A 54 REMARK 465 ARG A 55 REMARK 465 ALA A 56 REMARK 465 GLN A 57 REMARK 465 ALA A 58 REMARK 465 GLY A 189 REMARK 465 ALA A 190 REMARK 465 HIS A 191 REMARK 465 HIS A 192 REMARK 465 GLY A 193 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 319 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 68 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 249 128.14 -170.67 REMARK 500 ASP A 277 -34.39 128.87 REMARK 500 ARG A 330 -114.90 -124.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 269 O REMARK 620 2 HOH A 601 O 87.4 REMARK 620 3 HOH A 614 O 176.1 90.4 REMARK 620 4 HOH A 662 O 93.9 82.8 89.0 REMARK 620 5 HOH A 722 O 82.8 157.3 100.4 77.5 REMARK 620 6 HOH A 744 O 90.2 104.8 87.3 171.5 95.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-512911 RELATED DB: TARGETTRACK DBREF 6CHK A 54 333 UNP Q036L9 Q036L9_LACP3 54 333 SEQADV 6CHK SER A 52 UNP Q036L9 EXPRESSION TAG SEQADV 6CHK MET A 53 UNP Q036L9 EXPRESSION TAG SEQRES 1 A 282 SER MET LEU ARG ALA GLN ALA THR GLY ASN ILE GLY VAL SEQRES 2 A 282 LEU VAL SER ARG VAL THR ASN PRO PHE PHE ALA GLY LEU SEQRES 3 A 282 PHE ASP ALA ILE GLU ARG GLU LEU HIS ALA HIS GLY TYR SEQRES 4 A 282 GLN VAL MET ILE THR GLN THR TYR ASP ASP PRO GLU ALA SEQRES 5 A 282 GLU GLU ARG PHE LEU LYS GLN LEU LYS SER ARG GLU LEU SEQRES 6 A 282 ASP GLY VAL ILE LEU ALA SER VAL GLU ALA PRO ASP ARG SEQRES 7 A 282 VAL MET ALA VAL ALA LYS ALA PHE PRO GLY ARG VAL VAL SEQRES 8 A 282 VAL VAL ASN ALA ASP VAL GLN ILE PRO GLY ALA THR SER SEQRES 9 A 282 LEU VAL LEU PRO HIS TYR GLN ALA THR ARG ASP ALA LEU SEQRES 10 A 282 ASP TYR LEU PHE ASN GLN GLY HIS ARG ARG PHE ALA TYR SEQRES 11 A 282 VAL SER GLY GLY THR ILE SER GLY ALA HIS HIS GLY GLN SEQRES 12 A 282 SER ARG THR GLN ALA PHE LEU ASP PHE MET GLN ALA HIS SEQRES 13 A 282 GLN LEU LEU VAL ALA GLN ASP LEU LEU PHE GLY GLN ILE SEQRES 14 A 282 HIS THR ALA LYS GLU GLY GLN ALA VAL GLY LYS GLN LEU SEQRES 15 A 282 ALA SER LEU ALA PRO ASN VAL ARG PRO ASP ALA VAL PHE SEQRES 16 A 282 THR ASN SER ASP GLU VAL ALA VAL GLY VAL ILE ASP SER SEQRES 17 A 282 LEU LEU ALA ALA ASP VAL LYS VAL PRO ASP ASP ILE ALA SEQRES 18 A 282 VAL MET GLY TYR ASP ASP GLN PRO PHE ALA PRO PHE ALA SEQRES 19 A 282 LYS ILE PRO LEU THR THR VAL HIS GLN PRO VAL ALA SER SEQRES 20 A 282 MET ALA ALA ALA ALA THR HIS GLU LEU LEU LYS GLY LEU SEQRES 21 A 282 GLY ARG GLN VAL ALA GLN ASP THR GLN PRO THR LEU HIS SEQRES 22 A 282 LEU SER LEU LYS ILE ARG GLN SER ALA HET TRS A 401 8 HET NA A 402 1 HET CL A 403 1 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETSYN TRS TRIS BUFFER FORMUL 2 TRS C4 H12 N O3 1+ FORMUL 3 NA NA 1+ FORMUL 4 CL CL 1- FORMUL 5 HOH *315(H2 O) HELIX 1 AA1 ASN A 71 HIS A 88 1 18 HELIX 2 AA2 ASP A 100 SER A 113 1 14 HELIX 3 AA3 ALA A 126 PHE A 137 1 12 HELIX 4 AA4 PRO A 159 GLN A 174 1 16 HELIX 5 AA5 SER A 195 HIS A 207 1 13 HELIX 6 AA6 ALA A 212 ASP A 214 5 3 HELIX 7 AA7 THR A 222 SER A 235 1 14 HELIX 8 AA8 SER A 249 ALA A 263 1 15 HELIX 9 AA9 PHE A 281 ALA A 285 5 5 HELIX 10 AB1 PRO A 295 LEU A 311 1 17 SHEET 1 AA1 5 GLN A 91 GLN A 96 0 SHEET 2 AA1 5 ASN A 61 VAL A 66 1 N VAL A 64 O MET A 93 SHEET 3 AA1 5 GLY A 118 LEU A 121 1 O ILE A 120 N GLY A 63 SHEET 4 AA1 5 VAL A 141 VAL A 144 1 O VAL A 142 N LEU A 121 SHEET 5 AA1 5 THR A 154 LEU A 156 1 O THR A 154 N VAL A 143 SHEET 1 AA2 4 LEU A 216 PHE A 217 0 SHEET 2 AA2 4 PHE A 179 VAL A 182 1 N TYR A 181 O PHE A 217 SHEET 3 AA2 4 ALA A 244 PHE A 246 1 O ALA A 244 N ALA A 180 SHEET 4 AA2 4 ALA A 272 MET A 274 1 O MET A 274 N VAL A 245 SHEET 1 AA3 2 THR A 291 HIS A 293 0 SHEET 2 AA3 2 SER A 326 LYS A 328 -1 O LYS A 328 N THR A 291 LINK O ASP A 269 NA NA A 402 1555 1555 2.74 LINK NA NA A 402 O HOH A 601 1555 1555 2.35 LINK NA NA A 402 O HOH A 614 1555 1555 2.89 LINK NA NA A 402 O HOH A 662 1555 1555 2.44 LINK NA NA A 402 O HOH A 722 1555 1555 2.44 LINK NA NA A 402 O HOH A 744 1555 1555 2.47 CISPEP 1 VAL A 267 PRO A 268 0 9.89 SITE 1 AC1 10 ASN A 71 ARG A 196 ASN A 248 TYR A 276 SITE 2 AC1 10 ASP A 277 GLN A 279 GLN A 294 HOH A 513 SITE 3 AC1 10 HOH A 658 HOH A 671 SITE 1 AC2 6 ASP A 269 HOH A 601 HOH A 614 HOH A 662 SITE 2 AC2 6 HOH A 722 HOH A 744 SITE 1 AC3 5 ASN A 145 ASP A 147 VAL A 157 LEU A 158 SITE 2 AC3 5 HIS A 160 CRYST1 108.715 108.715 125.395 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009198 0.005311 0.000000 0.00000 SCALE2 0.000000 0.010621 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007975 0.00000