HEADER TRANSCRIPTION/INHIBITOR 25-FEB-18 6CIY
TITLE CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD4 IN COMPLEX
TITLE 2 WITH THE INHIBITOR JWG069
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 4;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RESIDUES 44-168;
COMPND 5 SYNONYM: PROTEIN HUNK1;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: BRD4, HUNK1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS KINASE, INHIBITOR, BRD4, TRANSCRIPTION, TRANSCRIPTION-INHIBITOR
KEYWDS 2 COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR X.XU,S.C.BLACKLOW
REVDAT 4 04-OCT-23 6CIY 1 REMARK
REVDAT 3 01-JAN-20 6CIY 1 REMARK
REVDAT 2 03-OCT-18 6CIY 1 JRNL
REVDAT 1 29-AUG-18 6CIY 0
JRNL AUTH J.WANG,T.ERAZO,F.M.FERGUSON,D.L.BUCKLEY,N.GOMEZ,
JRNL AUTH 2 P.MUNOZ-GUARDIOLA,N.DIEGUEZ-MARTINEZ,X.DENG,M.HAO,
JRNL AUTH 3 W.MASSEFSKI,O.FEDOROV,N.K.OFFEI-ADDO,P.M.PARK,L.DAI,
JRNL AUTH 4 A.DIBONA,K.BECHT,N.D.KIM,M.R.MCKEOWN,J.M.ROBERTS,J.ZHANG,
JRNL AUTH 5 T.SIM,D.R.ALESSI,J.E.BRADNER,J.M.LIZCANO,S.C.BLACKLOW,J.QI,
JRNL AUTH 6 X.XU,N.S.GRAY
JRNL TITL STRUCTURAL AND ATROPISOMERIC FACTORS GOVERNING THE
JRNL TITL 2 SELECTIVITY OF PYRIMIDO-BENZODIAZIPINONES AS INHIBITORS OF
JRNL TITL 3 KINASES AND BROMODOMAINS.
JRNL REF ACS CHEM. BIOL. V. 13 2438 2018
JRNL REFN ESSN 1554-8937
JRNL PMID 30102854
JRNL DOI 10.1021/ACSCHEMBIO.7B00638
REMARK 2
REMARK 2 RESOLUTION. 1.68 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.7_650
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.30
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0
REMARK 3 NUMBER OF REFLECTIONS : 16364
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.177
REMARK 3 R VALUE (WORKING SET) : 0.175
REMARK 3 FREE R VALUE : 0.207
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990
REMARK 3 FREE R VALUE TEST SET COUNT : 817
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 36.3065 - 3.0523 0.99 2844 133 0.1552 0.1719
REMARK 3 2 3.0523 - 2.4228 0.99 2672 165 0.1636 0.2059
REMARK 3 3 2.4228 - 2.1166 0.99 2640 138 0.1609 0.2202
REMARK 3 4 2.1166 - 1.9231 0.97 2589 134 0.1649 0.1901
REMARK 3 5 1.9231 - 1.7853 0.94 2523 119 0.2019 0.2565
REMARK 3 6 1.7853 - 1.6800 0.88 2279 128 0.3776 0.3394
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 0.90
REMARK 3 SHRINKAGE RADIUS : 0.61
REMARK 3 K_SOL : 0.35
REMARK 3 B_SOL : 37.96
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.870
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 5.28230
REMARK 3 B22 (A**2) : -3.29690
REMARK 3 B33 (A**2) : -1.98530
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.007 1133
REMARK 3 ANGLE : 1.655 1541
REMARK 3 CHIRALITY : 0.070 160
REMARK 3 PLANARITY : 0.006 197
REMARK 3 DIHEDRAL : 14.311 445
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 10
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 42:51)
REMARK 3 ORIGIN FOR THE GROUP (A): 14.2560 12.3977 -17.1856
REMARK 3 T TENSOR
REMARK 3 T11: 0.1335 T22: 0.0894
REMARK 3 T33: 0.0879 T12: -0.0248
REMARK 3 T13: 0.0151 T23: 0.0002
REMARK 3 L TENSOR
REMARK 3 L11: 0.1472 L22: 0.4616
REMARK 3 L33: 0.5506 L12: 0.0293
REMARK 3 L13: -0.0495 L23: 0.2665
REMARK 3 S TENSOR
REMARK 3 S11: 0.0596 S12: -0.0029 S13: 0.0421
REMARK 3 S21: -0.1853 S22: 0.0822 S23: -0.2498
REMARK 3 S31: -0.2233 S32: -0.0359 S33: -0.0339
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 52:68)
REMARK 3 ORIGIN FOR THE GROUP (A): 12.7296 -7.5988 -25.2717
REMARK 3 T TENSOR
REMARK 3 T11: 0.1514 T22: 0.0927
REMARK 3 T33: 0.1083 T12: -0.0221
REMARK 3 T13: 0.0248 T23: 0.0054
REMARK 3 L TENSOR
REMARK 3 L11: 0.0348 L22: 0.6237
REMARK 3 L33: 0.3170 L12: -0.0878
REMARK 3 L13: -0.0805 L23: -0.1143
REMARK 3 S TENSOR
REMARK 3 S11: 0.0051 S12: 0.0781 S13: -0.0188
REMARK 3 S21: -0.2034 S22: -0.0427 S23: -0.2100
REMARK 3 S31: 0.0758 S32: -0.1279 S33: 0.0026
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 69:75)
REMARK 3 ORIGIN FOR THE GROUP (A): 2.5070 -6.6903 -13.8505
REMARK 3 T TENSOR
REMARK 3 T11: 0.0920 T22: 0.1158
REMARK 3 T33: 0.1044 T12: -0.0112
REMARK 3 T13: 0.0139 T23: -0.0052
REMARK 3 L TENSOR
REMARK 3 L11: 0.3497 L22: 1.4861
REMARK 3 L33: 0.8797 L12: 0.0410
REMARK 3 L13: -0.1712 L23: 0.1139
REMARK 3 S TENSOR
REMARK 3 S11: -0.0456 S12: 0.0784 S13: -0.0188
REMARK 3 S21: 0.0231 S22: -0.1289 S23: -0.2082
REMARK 3 S31: 0.0637 S32: -0.1140 S33: 0.0773
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 76:83)
REMARK 3 ORIGIN FOR THE GROUP (A): 0.8491 -0.4867 -5.6982
REMARK 3 T TENSOR
REMARK 3 T11: 0.0451 T22: 0.0889
REMARK 3 T33: 0.0859 T12: -0.0105
REMARK 3 T13: 0.0069 T23: -0.0217
REMARK 3 L TENSOR
REMARK 3 L11: 0.2286 L22: 0.3063
REMARK 3 L33: 0.0189 L12: -0.0320
REMARK 3 L13: -0.0060 L23: -0.0730
REMARK 3 S TENSOR
REMARK 3 S11: 0.0728 S12: -0.0329 S13: 0.0309
REMARK 3 S21: 0.0609 S22: -0.1532 S23: 0.2428
REMARK 3 S31: 0.0011 S32: -0.2294 S33: 0.0390
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 84:96)
REMARK 3 ORIGIN FOR THE GROUP (A): 8.4967 13.5521 -6.5024
REMARK 3 T TENSOR
REMARK 3 T11: 0.0711 T22: 0.0878
REMARK 3 T33: 0.1165 T12: 0.0021
REMARK 3 T13: 0.0132 T23: -0.0242
REMARK 3 L TENSOR
REMARK 3 L11: 0.0756 L22: 0.1589
REMARK 3 L33: 0.1756 L12: 0.0901
REMARK 3 L13: 0.0736 L23: 0.1100
REMARK 3 S TENSOR
REMARK 3 S11: 0.0733 S12: -0.1280 S13: 0.2262
REMARK 3 S21: -0.0197 S22: -0.1145 S23: 0.1875
REMARK 3 S31: -0.0566 S32: -0.1882 S33: 0.0593
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 97:115)
REMARK 3 ORIGIN FOR THE GROUP (A): 13.0287 4.9746 -13.2188
REMARK 3 T TENSOR
REMARK 3 T11: 0.0568 T22: 0.0611
REMARK 3 T33: 0.0675 T12: -0.0137
REMARK 3 T13: 0.0058 T23: -0.0063
REMARK 3 L TENSOR
REMARK 3 L11: 0.3081 L22: 0.1082
REMARK 3 L33: 0.1839 L12: -0.0894
REMARK 3 L13: -0.0278 L23: 0.0507
REMARK 3 S TENSOR
REMARK 3 S11: 0.0407 S12: -0.0209 S13: 0.0740
REMARK 3 S21: -0.0210 S22: -0.0139 S23: 0.0753
REMARK 3 S31: 0.0360 S32: -0.0717 S33: -0.0118
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 116:121)
REMARK 3 ORIGIN FOR THE GROUP (A): 15.4180 -4.3350 -25.0791
REMARK 3 T TENSOR
REMARK 3 T11: 0.1503 T22: 0.0817
REMARK 3 T33: 0.0544 T12: -0.0229
REMARK 3 T13: 0.0419 T23: -0.0028
REMARK 3 L TENSOR
REMARK 3 L11: 0.1398 L22: 0.2350
REMARK 3 L33: 0.0768 L12: 0.1806
REMARK 3 L13: 0.0998 L23: 0.1327
REMARK 3 S TENSOR
REMARK 3 S11: -0.0674 S12: 0.0325 S13: -0.0028
REMARK 3 S21: -0.1354 S22: -0.0946 S23: 0.0787
REMARK 3 S31: 0.1300 S32: -0.0687 S33: -0.0599
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 122:139)
REMARK 3 ORIGIN FOR THE GROUP (A): 15.7048 -2.0126 -8.8749
REMARK 3 T TENSOR
REMARK 3 T11: 0.0689 T22: 0.0725
REMARK 3 T33: 0.0781 T12: -0.0027
REMARK 3 T13: 0.0046 T23: 0.0096
REMARK 3 L TENSOR
REMARK 3 L11: 0.6596 L22: 0.3654
REMARK 3 L33: 0.4189 L12: 0.1786
REMARK 3 L13: 0.0752 L23: -0.1341
REMARK 3 S TENSOR
REMARK 3 S11: -0.0177 S12: -0.0359 S13: -0.0885
REMARK 3 S21: -0.0660 S22: 0.0189 S23: -0.0302
REMARK 3 S31: 0.1188 S32: -0.0870 S33: -0.0028
REMARK 3 TLS GROUP : 9
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 140:144)
REMARK 3 ORIGIN FOR THE GROUP (A): 12.4606 3.3833 6.2525
REMARK 3 T TENSOR
REMARK 3 T11: 0.0632 T22: 0.1716
REMARK 3 T33: 0.0854 T12: 0.0074
REMARK 3 T13: -0.0018 T23: 0.0281
REMARK 3 L TENSOR
REMARK 3 L11: 0.2248 L22: 0.1363
REMARK 3 L33: 0.2548 L12: 0.0181
REMARK 3 L13: -0.1951 L23: -0.1102
REMARK 3 S TENSOR
REMARK 3 S11: -0.0073 S12: -0.0473 S13: -0.0775
REMARK 3 S21: 0.1029 S22: 0.0268 S23: 0.0436
REMARK 3 S31: -0.0029 S32: 0.2043 S33: 0.0178
REMARK 3 TLS GROUP : 10
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 145:166)
REMARK 3 ORIGIN FOR THE GROUP (A): 8.1459 -9.9536 -5.7393
REMARK 3 T TENSOR
REMARK 3 T11: 0.0959 T22: 0.0613
REMARK 3 T33: 0.0803 T12: 0.0124
REMARK 3 T13: 0.0282 T23: 0.0190
REMARK 3 L TENSOR
REMARK 3 L11: 0.5948 L22: 0.1889
REMARK 3 L33: 0.3340 L12: -0.1795
REMARK 3 L13: 0.2128 L23: -0.2536
REMARK 3 S TENSOR
REMARK 3 S11: -0.0070 S12: -0.1195 S13: -0.0948
REMARK 3 S21: -0.0066 S22: -0.0401 S23: 0.0451
REMARK 3 S31: 0.2034 S32: 0.0011 S33: 0.0177
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6CIY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-18.
REMARK 100 THE DEPOSITION ID IS D_1000232825.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 19-AUG-15
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 24-ID-E
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17055
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680
REMARK 200 RESOLUTION RANGE LOW (A) : 84.570
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 200 DATA REDUNDANCY : 6.800
REMARK 200 R MERGE (I) : 0.13000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.0000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9
REMARK 200 DATA REDUNDANCY IN SHELL : 6.90
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHENIX
REMARK 200 STARTING MODEL: 4WIV
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 48.32
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM NITRATE, 5% ETHYLENE
REMARK 280 GLYCOL, 18% (W/V) PEG3350, VAPOR DIFFUSION, HANGING DROP,
REMARK 280 TEMPERATURE 295K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.09400
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.28500
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.14950
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.28500
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.09400
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 21.14950
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLU A 167
REMARK 465 GLU A 168
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH A 453 O HOH A 486 2.05
REMARK 500 O THR A 166 O HOH A 301 2.05
REMARK 500 O HOH A 417 O HOH A 452 2.15
REMARK 500 O HOH A 418 O HOH A 446 2.17
REMARK 500 O HOH A 453 O HOH A 457 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 373 O HOH A 378 3644 1.96
REMARK 500 O HOH A 466 O HOH A 477 4555 2.12
REMARK 500 O HOH A 370 O HOH A 428 3644 2.15
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 VAL A 69 -60.06 -121.28
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 529 DISTANCE = 6.12 ANGSTROMS
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue F3J A 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 204
DBREF 6CIY A 44 168 UNP O60885 BRD4_HUMAN 44 168
SEQADV 6CIY SER A 42 UNP O60885 EXPRESSION TAG
SEQADV 6CIY MET A 43 UNP O60885 EXPRESSION TAG
SEQRES 1 A 127 SER MET ASN PRO PRO PRO PRO GLU THR SER ASN PRO ASN
SEQRES 2 A 127 LYS PRO LYS ARG GLN THR ASN GLN LEU GLN TYR LEU LEU
SEQRES 3 A 127 ARG VAL VAL LEU LYS THR LEU TRP LYS HIS GLN PHE ALA
SEQRES 4 A 127 TRP PRO PHE GLN GLN PRO VAL ASP ALA VAL LYS LEU ASN
SEQRES 5 A 127 LEU PRO ASP TYR TYR LYS ILE ILE LYS THR PRO MET ASP
SEQRES 6 A 127 MET GLY THR ILE LYS LYS ARG LEU GLU ASN ASN TYR TYR
SEQRES 7 A 127 TRP ASN ALA GLN GLU CYS ILE GLN ASP PHE ASN THR MET
SEQRES 8 A 127 PHE THR ASN CYS TYR ILE TYR ASN LYS PRO GLY ASP ASP
SEQRES 9 A 127 ILE VAL LEU MET ALA GLU ALA LEU GLU LYS LEU PHE LEU
SEQRES 10 A 127 GLN LYS ILE ASN GLU LEU PRO THR GLU GLU
HET F3J A 201 45
HET EDO A 202 4
HET EDO A 203 4
HET NO3 A 204 4
HETNAM F3J 11-CYCLOBUTYL-2-({2-METHOXY-4-[4-(4-METHYLPIPERAZIN-1-
HETNAM 2 F3J YL)PIPERIDINE-1-CARBONYL]PHENYL}AMINO)-5-METHYL-5,11-
HETNAM 3 F3J DIHYDRO-6H-PYRIMIDO[4,5-B][1,4]BENZODIAZEPIN-6-ONE
HETNAM EDO 1,2-ETHANEDIOL
HETNAM NO3 NITRATE ION
HETSYN EDO ETHYLENE GLYCOL
FORMUL 2 F3J C34 H42 N8 O3
FORMUL 3 EDO 2(C2 H6 O2)
FORMUL 5 NO3 N O3 1-
FORMUL 6 HOH *229(H2 O)
HELIX 1 AA1 THR A 60 VAL A 69 1 10
HELIX 2 AA2 VAL A 69 LYS A 76 1 8
HELIX 3 AA3 ALA A 80 GLN A 84 5 5
HELIX 4 AA4 ASP A 96 ILE A 101 1 6
HELIX 5 AA5 ASP A 106 ASN A 116 1 11
HELIX 6 AA6 ASN A 121 ASN A 140 1 20
HELIX 7 AA7 ASP A 144 GLU A 163 1 20
SITE 1 AC1 13 TRP A 81 PRO A 82 PHE A 83 GLN A 85
SITE 2 AC1 13 LEU A 92 ASP A 96 ILE A 100 TYR A 139
SITE 3 AC1 13 ASN A 140 HOH A 311 HOH A 329 HOH A 374
SITE 4 AC1 13 HOH A 375
SITE 1 AC2 7 ILE A 100 ILE A 101 LYS A 102 THR A 103
SITE 2 AC2 7 ASN A 135 HOH A 323 HOH A 326
SITE 1 AC3 5 LYS A 57 ASP A 144 ASP A 145 HOH A 355
SITE 2 AC3 5 HOH A 413
SITE 1 AC4 7 GLN A 78 PHE A 79 TRP A 81 PRO A 95
SITE 2 AC4 7 ASP A 96 LYS A 99 MET A 149
CRYST1 40.188 42.299 84.570 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.024883 0.000000 0.000000 0.00000
SCALE2 0.000000 0.023641 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011825 0.00000