HEADER TRANSCRIPTION/INHIBITOR 26-FEB-18 6CJ2
TITLE CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD4 IN COMPLEX
TITLE 2 WITH THE INHIBITOR JWG056
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 4;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RESIDUES 42-166;
COMPND 5 SYNONYM: PROTEIN HUNK1;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: BRD4, HUNK1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS KINASE, INHIBITOR, BRD4, TRANSCRIPTION, TRANSCRIPTION-INHIBITOR
KEYWDS 2 COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR X.XU,S.C.BLACKLOW
REVDAT 4 04-OCT-23 6CJ2 1 REMARK
REVDAT 3 16-SEP-20 6CJ2 1 JRNL
REVDAT 2 01-JAN-20 6CJ2 1 REMARK
REVDAT 1 06-MAR-19 6CJ2 0
JRNL AUTH J.WANG,T.ERAZO,F.M.FERGUSON,D.L.BUCKLEY,N.GOMEZ,
JRNL AUTH 2 P.MUNOZ-GUARDIOLA,N.DIEGUEZ-MARTINEZ,X.DENG,M.HAO,
JRNL AUTH 3 W.MASSEFSKI,O.FEDOROV,N.K.OFFEI-ADDO,P.M.PARK,L.DAI,
JRNL AUTH 4 A.DIBONA,K.BECHT,N.D.KIM,M.R.MCKEOWN,J.M.ROBERTS,J.ZHANG,
JRNL AUTH 5 T.SIM,D.R.ALESSI,J.E.BRADNER,J.M.LIZCANO,S.C.BLACKLOW,J.QI,
JRNL AUTH 6 X.XU,N.S.GRAY
JRNL TITL STRUCTURAL AND ATROPISOMERIC FACTORS GOVERNING THE
JRNL TITL 2 SELECTIVITY OF PYRIMIDO-BENZODIAZIPINONES AS INHIBITORS OF
JRNL TITL 3 KINASES AND BROMODOMAINS.
JRNL REF ACS CHEM.BIOL. V. 13 2438 2018
JRNL REFN ESSN 1554-8937
JRNL PMID 30102854
JRNL DOI 10.1021/ACSCHEMBIO.7B00638
REMARK 2
REMARK 2 RESOLUTION. 1.47 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.7_650
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.29
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0
REMARK 3 NUMBER OF REFLECTIONS : 20080
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.184
REMARK 3 R VALUE (WORKING SET) : 0.183
REMARK 3 FREE R VALUE : 0.214
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150
REMARK 3 FREE R VALUE TEST SET COUNT : 1035
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 30.2928 - 2.8115 0.99 3074 154 0.1535 0.1616
REMARK 3 2 2.8115 - 2.2318 0.99 2931 161 0.1613 0.1973
REMARK 3 3 2.2318 - 1.9497 0.98 2869 154 0.1732 0.2035
REMARK 3 4 1.9497 - 1.7715 0.95 2761 140 0.1944 0.2576
REMARK 3 5 1.7715 - 1.6445 0.91 2615 130 0.2405 0.2669
REMARK 3 6 1.6445 - 1.5476 0.86 2476 150 0.2871 0.3327
REMARK 3 7 1.5476 - 1.4701 0.81 2319 146 0.3597 0.4418
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 0.90
REMARK 3 SHRINKAGE RADIUS : 0.61
REMARK 3 K_SOL : 0.39
REMARK 3 B_SOL : 51.23
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.010
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 9.38460
REMARK 3 B22 (A**2) : -5.48700
REMARK 3 B33 (A**2) : -3.89770
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.006 1095
REMARK 3 ANGLE : 1.221 1498
REMARK 3 CHIRALITY : 0.071 159
REMARK 3 PLANARITY : 0.006 192
REMARK 3 DIHEDRAL : 11.463 415
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 9
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 42:51)
REMARK 3 ORIGIN FOR THE GROUP (A): -11.6090 8.1159 15.8761
REMARK 3 T TENSOR
REMARK 3 T11: 0.1573 T22: 0.1350
REMARK 3 T33: 0.1131 T12: -0.0001
REMARK 3 T13: 0.0444 T23: -0.0011
REMARK 3 L TENSOR
REMARK 3 L11: 0.6675 L22: 0.4037
REMARK 3 L33: 1.0249 L12: 0.2550
REMARK 3 L13: -0.3917 L23: -0.2959
REMARK 3 S TENSOR
REMARK 3 S11: 0.2167 S12: -0.0667 S13: 0.0496
REMARK 3 S21: -0.0214 S22: -0.0426 S23: 0.0447
REMARK 3 S31: -0.0273 S32: 0.0952 S33: -0.0195
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 52:60)
REMARK 3 ORIGIN FOR THE GROUP (A): -10.6158 -8.7990 25.7613
REMARK 3 T TENSOR
REMARK 3 T11: 0.1253 T22: 0.1275
REMARK 3 T33: 0.1105 T12: -0.0042
REMARK 3 T13: 0.0140 T23: 0.0023
REMARK 3 L TENSOR
REMARK 3 L11: 0.7701 L22: 0.7214
REMARK 3 L33: 0.6920 L12: -0.0353
REMARK 3 L13: -0.5149 L23: -0.3228
REMARK 3 S TENSOR
REMARK 3 S11: -0.0333 S12: 0.0769 S13: -0.0249
REMARK 3 S21: 0.1436 S22: -0.1272 S23: 0.1134
REMARK 3 S31: 0.1013 S32: 0.0245 S33: 0.0256
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 61:76)
REMARK 3 ORIGIN FOR THE GROUP (A): -2.3683 -12.0530 9.9981
REMARK 3 T TENSOR
REMARK 3 T11: 0.1080 T22: 0.1473
REMARK 3 T33: 0.1520 T12: 0.0202
REMARK 3 T13: 0.0000 T23: -0.0141
REMARK 3 L TENSOR
REMARK 3 L11: 0.3728 L22: 0.8775
REMARK 3 L33: 0.8269 L12: 0.0784
REMARK 3 L13: -0.4741 L23: -0.4010
REMARK 3 S TENSOR
REMARK 3 S11: -0.0936 S12: 0.0179 S13: -0.0952
REMARK 3 S21: -0.0881 S22: 0.0388 S23: -0.2187
REMARK 3 S31: 0.1957 S32: 0.0136 S33: 0.0575
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 77:106)
REMARK 3 ORIGIN FOR THE GROUP (A): -10.4114 6.4877 4.4182
REMARK 3 T TENSOR
REMARK 3 T11: 0.1309 T22: 0.1236
REMARK 3 T33: 0.1473 T12: -0.0084
REMARK 3 T13: 0.0224 T23: -0.0027
REMARK 3 L TENSOR
REMARK 3 L11: 1.2577 L22: 0.7419
REMARK 3 L33: 0.7014 L12: -0.6707
REMARK 3 L13: -0.3003 L23: 0.3958
REMARK 3 S TENSOR
REMARK 3 S11: 0.0773 S12: -0.0749 S13: 0.1378
REMARK 3 S21: -0.1016 S22: -0.0097 S23: -0.1566
REMARK 3 S31: -0.0989 S32: 0.0958 S33: -0.0453
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 107:115)
REMARK 3 ORIGIN FOR THE GROUP (A): -5.1105 -3.5812 14.6776
REMARK 3 T TENSOR
REMARK 3 T11: 0.1181 T22: 0.1537
REMARK 3 T33: 0.1226 T12: -0.0047
REMARK 3 T13: 0.0119 T23: -0.0131
REMARK 3 L TENSOR
REMARK 3 L11: 0.8409 L22: 0.7425
REMARK 3 L33: 0.7444 L12: -0.0129
REMARK 3 L13: -0.1941 L23: -0.5218
REMARK 3 S TENSOR
REMARK 3 S11: -0.0076 S12: 0.0729 S13: 0.0262
REMARK 3 S21: -0.1160 S22: -0.0371 S23: -0.1279
REMARK 3 S31: -0.1711 S32: 0.1482 S33: -0.0063
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 116:121)
REMARK 3 ORIGIN FOR THE GROUP (A): -10.3167 -9.4091 21.3405
REMARK 3 T TENSOR
REMARK 3 T11: 0.1306 T22: 0.1534
REMARK 3 T33: 0.0877 T12: 0.0007
REMARK 3 T13: 0.0112 T23: 0.0080
REMARK 3 L TENSOR
REMARK 3 L11: 0.7557 L22: 0.4571
REMARK 3 L33: 0.3631 L12: 0.0535
REMARK 3 L13: -0.3179 L23: -0.2291
REMARK 3 S TENSOR
REMARK 3 S11: -0.0682 S12: 0.0492 S13: 0.0760
REMARK 3 S21: 0.0690 S22: 0.0939 S23: 0.0791
REMARK 3 S31: 0.0804 S32: 0.1286 S33: -0.0067
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 122:139)
REMARK 3 ORIGIN FOR THE GROUP (A): -15.1838 -4.4446 6.6832
REMARK 3 T TENSOR
REMARK 3 T11: 0.1048 T22: 0.1137
REMARK 3 T33: 0.1059 T12: -0.0055
REMARK 3 T13: -0.0000 T23: -0.0193
REMARK 3 L TENSOR
REMARK 3 L11: 0.5710 L22: 1.1536
REMARK 3 L33: 1.2806 L12: -0.7477
REMARK 3 L13: 0.2173 L23: -0.9458
REMARK 3 S TENSOR
REMARK 3 S11: 0.1000 S12: 0.0035 S13: 0.0001
REMARK 3 S21: -0.1612 S22: -0.0434 S23: 0.0310
REMARK 3 S31: 0.0878 S32: 0.0740 S33: -0.0324
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 140:161)
REMARK 3 ORIGIN FOR THE GROUP (A): -11.0620 -5.7245 -2.8844
REMARK 3 T TENSOR
REMARK 3 T11: 0.1187 T22: 0.1409
REMARK 3 T33: 0.1177 T12: -0.0059
REMARK 3 T13: 0.0121 T23: -0.0164
REMARK 3 L TENSOR
REMARK 3 L11: 0.0493 L22: 1.0197
REMARK 3 L33: 0.5120 L12: 0.0524
REMARK 3 L13: -0.1110 L23: -0.4935
REMARK 3 S TENSOR
REMARK 3 S11: -0.0431 S12: 0.0824 S13: -0.0335
REMARK 3 S21: -0.0964 S22: 0.0340 S23: -0.1067
REMARK 3 S31: -0.0146 S32: -0.0470 S33: -0.0043
REMARK 3 TLS GROUP : 9
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 162:166)
REMARK 3 ORIGIN FOR THE GROUP (A): -8.1939 -22.7725 9.2544
REMARK 3 T TENSOR
REMARK 3 T11: 0.2628 T22: 0.1337
REMARK 3 T33: 0.2507 T12: 0.0375
REMARK 3 T13: 0.0198 T23: 0.0482
REMARK 3 L TENSOR
REMARK 3 L11: 3.1627 L22: 0.0673
REMARK 3 L33: 4.0325 L12: -0.3997
REMARK 3 L13: 1.3230 L23: -0.3389
REMARK 3 S TENSOR
REMARK 3 S11: 0.1732 S12: -0.0716 S13: -0.8060
REMARK 3 S21: -0.0484 S22: -0.1130 S23: 0.2113
REMARK 3 S31: 0.6782 S32: 0.0585 S33: -0.0960
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6CJ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-18.
REMARK 100 THE DEPOSITION ID IS D_1000232840.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 20-AUG-15
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 24-ID-E
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21521
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470
REMARK 200 RESOLUTION RANGE LOW (A) : 78.670
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7
REMARK 200 DATA REDUNDANCY : 5.600
REMARK 200 R MERGE (I) : 0.08300
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.1000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50
REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8
REMARK 200 DATA REDUNDANCY IN SHELL : 4.30
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.100
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHENIX
REMARK 200 STARTING MODEL: 4WIV
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 40.46
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM NITRATE, 5% ETHYLENE
REMARK 280 GLYCOL, 18% (W/V) PEG3350, VAPOR DIFFUSION, HANGING DROP,
REMARK 280 TEMPERATURE 295K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.40800
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.33300
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.70600
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.33300
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.40800
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.70600
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLN A 64 CD OE1 NE2
REMARK 470 ARG A 68 CG CD NE CZ NH1 NH2
REMARK 470 GLN A 127 CG CD OE1 NE2
REMARK 470 LYS A 141 CG CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH A 426 O HOH A 487 1.92
REMARK 500 O HOH A 303 O HOH A 367 2.09
REMARK 500 O HOH A 305 O HOH A 367 2.14
REMARK 500 O HOH A 312 O HOH A 464 2.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 390 O HOH A 412 2455 2.09
REMARK 500 O HOH A 421 O HOH A 429 3455 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 THR A 43 155.52 -49.43
REMARK 500 ASN A 52 107.38 -161.97
REMARK 500 LEU A 94 66.15 -119.73
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue X27 A 201
DBREF 6CJ2 A 42 166 UNP O60885 BRD4_HUMAN 42 166
SEQRES 1 A 125 SER THR ASN PRO PRO PRO PRO GLU THR SER ASN PRO ASN
SEQRES 2 A 125 LYS PRO LYS ARG GLN THR ASN GLN LEU GLN TYR LEU LEU
SEQRES 3 A 125 ARG VAL VAL LEU LYS THR LEU TRP LYS HIS GLN PHE ALA
SEQRES 4 A 125 TRP PRO PHE GLN GLN PRO VAL ASP ALA VAL LYS LEU ASN
SEQRES 5 A 125 LEU PRO ASP TYR TYR LYS ILE ILE LYS THR PRO MET ASP
SEQRES 6 A 125 MET GLY THR ILE LYS LYS ARG LEU GLU ASN ASN TYR TYR
SEQRES 7 A 125 TRP ASN ALA GLN GLU CYS ILE GLN ASP PHE ASN THR MET
SEQRES 8 A 125 PHE THR ASN CYS TYR ILE TYR ASN LYS PRO GLY ASP ASP
SEQRES 9 A 125 ILE VAL LEU MET ALA GLU ALA LEU GLU LYS LEU PHE LEU
SEQRES 10 A 125 GLN LYS ILE ASN GLU LEU PRO THR
HET X27 A 201 36
HETNAM X27 2-{[3-METHOXY-4-(4-METHYLPIPERAZIN-1-YL)PHENYL]AMINO}-
HETNAM 2 X27 5-METHYL-11-(PROPAN-2-YL)-5,11-DIHYDRO-6H-PYRIMIDO[4,
HETNAM 3 X27 5-B][1,4]BENZODIAZEPIN-6-ONE
FORMUL 2 X27 C27 H33 N7 O2
FORMUL 3 HOH *219(H2 O)
HELIX 1 AA1 THR A 60 VAL A 69 1 10
HELIX 2 AA2 VAL A 69 TRP A 75 1 7
HELIX 3 AA3 ALA A 80 GLN A 84 5 5
HELIX 4 AA4 ASP A 96 ILE A 101 1 6
HELIX 5 AA5 ASP A 106 ASN A 117 1 12
HELIX 6 AA6 ASN A 121 ASN A 140 1 20
HELIX 7 AA7 ASP A 144 ASN A 162 1 19
SITE 1 AC1 13 TRP A 81 PRO A 82 GLN A 84 GLN A 85
SITE 2 AC1 13 LEU A 92 LEU A 94 ASP A 96 TYR A 139
SITE 3 AC1 13 ASN A 140 ILE A 146 HOH A 336 HOH A 341
SITE 4 AC1 13 HOH A 411
CRYST1 32.816 47.412 78.666 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.030473 0.000000 0.000000 0.00000
SCALE2 0.000000 0.021092 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012712 0.00000