HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 26-FEB-18 6CJF TITLE HUMAN DIHYDROOROTATE DEHYDROGENASE BOUND TO 4-QUINOLINE CARBOXYLIC TITLE 2 ACID INHIBITOR 43 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DHODEHASE,DIHYDROOROTATE OXIDASE; COMPND 5 EC: 1.3.5.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DHODH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE, OXIDOREDUCTASE INHIBITOR, OXIDOREDUCTASE- KEYWDS 2 OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.M.PETRUNAK,J.A.STUCKEY REVDAT 3 04-OCT-23 6CJF 1 REMARK REVDAT 2 11-JUL-18 6CJF 1 JRNL REVDAT 1 23-MAY-18 6CJF 0 JRNL AUTH J.T.MADAK,C.R.CUTHBERTSON,Y.MIYATA,S.TAMURA,E.M.PETRUNAK, JRNL AUTH 2 J.A.STUCKEY,Y.HAN,M.HE,D.SUN,H.D.SHOWALTER,N.NEAMATI JRNL TITL DESIGN, SYNTHESIS, AND BIOLOGICAL EVALUATION OF 4-QUINOLINE JRNL TITL 2 CARBOXYLIC ACIDS AS INHIBITORS OF DIHYDROOROTATE JRNL TITL 3 DEHYDROGENASE. JRNL REF J. MED. CHEM. V. 61 5162 2018 JRNL REFN ISSN 1520-4804 JRNL PMID 29727569 JRNL DOI 10.1021/ACS.JMEDCHEM.7B01862 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 75537 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 3816 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.4790 - 4.8842 0.99 2778 132 0.1840 0.1997 REMARK 3 2 4.8842 - 3.8788 0.99 2749 149 0.1464 0.1640 REMARK 3 3 3.8788 - 3.3891 0.99 2749 138 0.1520 0.1724 REMARK 3 4 3.3891 - 3.0795 0.99 2744 163 0.1637 0.1806 REMARK 3 5 3.0795 - 2.8589 0.98 2724 146 0.1688 0.1809 REMARK 3 6 2.8589 - 2.6904 0.98 2768 151 0.1646 0.1803 REMARK 3 7 2.6904 - 2.5558 0.98 2725 144 0.1645 0.1680 REMARK 3 8 2.5558 - 2.4445 0.98 2710 148 0.1615 0.1924 REMARK 3 9 2.4445 - 2.3505 0.98 2739 142 0.1638 0.1902 REMARK 3 10 2.3505 - 2.2694 0.98 2731 148 0.1572 0.1897 REMARK 3 11 2.2694 - 2.1984 0.98 2688 160 0.1573 0.2006 REMARK 3 12 2.1984 - 2.1356 0.97 2704 148 0.1586 0.1816 REMARK 3 13 2.1356 - 2.0794 0.97 2741 132 0.1540 0.2007 REMARK 3 14 2.0794 - 2.0287 0.97 2686 131 0.1636 0.2055 REMARK 3 15 2.0287 - 1.9826 0.97 2684 169 0.1698 0.2100 REMARK 3 16 1.9826 - 1.9404 0.97 2733 148 0.1555 0.1900 REMARK 3 17 1.9404 - 1.9016 0.97 2638 149 0.1629 0.1995 REMARK 3 18 1.9016 - 1.8657 0.96 2680 123 0.1605 0.1643 REMARK 3 19 1.8657 - 1.8324 0.96 2718 144 0.1571 0.1891 REMARK 3 20 1.8324 - 1.8013 0.96 2701 136 0.1596 0.2017 REMARK 3 21 1.8013 - 1.7723 0.96 2711 127 0.1637 0.2103 REMARK 3 22 1.7723 - 1.7450 0.95 2620 160 0.1729 0.2266 REMARK 3 23 1.7450 - 1.7193 0.93 2568 137 0.1803 0.2053 REMARK 3 24 1.7193 - 1.6951 0.90 2524 137 0.1790 0.2097 REMARK 3 25 1.6951 - 1.6722 0.87 2384 137 0.1831 0.2359 REMARK 3 26 1.6722 - 1.6505 0.83 2362 113 0.1874 0.2207 REMARK 3 27 1.6505 - 1.6299 0.77 2162 104 0.1974 0.2737 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5586 REMARK 3 ANGLE : 0.865 7594 REMARK 3 CHIRALITY : 0.053 862 REMARK 3 PLANARITY : 0.006 980 REMARK 3 DIHEDRAL : 19.643 3325 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CJF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1000232853. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75537 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42900 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4IGH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.72 M AMMONIUM SULFATE, 1.4 M SODIUM REMARK 280 CHLORIDE, 0.1 M SODIUM ACETATE PH 5.3, 10 MM DTT, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 69 REMARK 465 ARG A 70 REMARK 465 ALA A 71 REMARK 465 ARG A 72 REMARK 465 PHE A 73 REMARK 465 SER A 214 REMARK 465 SER A 215 REMARK 465 PRO A 216 REMARK 465 ASN A 217 REMARK 465 THR A 218 REMARK 465 ALA A 219 REMARK 465 GLY A 220 REMARK 465 LEU A 221 REMARK 465 ARG A 222 REMARK 465 SER A 223 REMARK 465 LEU A 224 REMARK 465 GLN A 225 REMARK 465 GLY A 400 REMARK 465 HIS A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 465 HIS A 404 REMARK 465 HIS A 405 REMARK 465 HIS A 406 REMARK 465 GLY B 33 REMARK 465 ASP B 34 REMARK 465 GLU B 35 REMARK 465 PRO B 69 REMARK 465 ARG B 70 REMARK 465 ALA B 71 REMARK 465 ARG B 72 REMARK 465 PHE B 73 REMARK 465 GLN B 74 REMARK 465 ASP B 75 REMARK 465 PRO B 216 REMARK 465 ASN B 217 REMARK 465 THR B 218 REMARK 465 ALA B 219 REMARK 465 GLY B 220 REMARK 465 LEU B 221 REMARK 465 ARG B 222 REMARK 465 SER B 223 REMARK 465 GLY B 400 REMARK 465 HIS B 401 REMARK 465 HIS B 402 REMARK 465 HIS B 403 REMARK 465 HIS B 404 REMARK 465 HIS B 405 REMARK 465 HIS B 406 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 61 NE CZ NH1 NH2 REMARK 470 GLN A 74 CD OE1 NE2 REMARK 470 ARG A 82 NE CZ NH1 NH2 REMARK 470 LYS A 87 CD CE NZ REMARK 470 ARG A 89 CZ NH1 NH2 REMARK 470 LYS A 110 CE NZ REMARK 470 GLN A 166 CD OE1 NE2 REMARK 470 LYS A 167 CD CE NZ REMARK 470 LYS A 170 CD CE NZ REMARK 470 LYS A 184 CE NZ REMARK 470 VAL A 189 CG1 CG2 REMARK 470 GLU A 229 CD OE1 OE2 REMARK 470 ARG A 232 CD NE CZ NH1 NH2 REMARK 470 LYS A 236 CD CE NZ REMARK 470 ARG A 245 NE CZ NH1 NH2 REMARK 470 LYS A 307 CD CE NZ REMARK 470 LYS A 379 CE NZ REMARK 470 GLU A 398 CD OE1 OE2 REMARK 470 ARG B 61 CZ NH1 NH2 REMARK 470 GLU B 80 CD OE1 OE2 REMARK 470 ARG B 82 CD NE CZ NH1 NH2 REMARK 470 LYS B 87 CD CE NZ REMARK 470 LYS B 124 CD CE NZ REMARK 470 GLU B 127 CG CD OE1 OE2 REMARK 470 LYS B 167 CE NZ REMARK 470 LYS B 170 CE NZ REMARK 470 GLU B 173 CD OE1 OE2 REMARK 470 GLN B 225 CG CD OE1 NE2 REMARK 470 LYS B 227 CD CE NZ REMARK 470 GLU B 229 CD OE1 OE2 REMARK 470 ARG B 231 CZ NH1 NH2 REMARK 470 ARG B 245 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 248 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 307 CD CE NZ REMARK 470 ARG B 395 CZ NH1 NH2 REMARK 470 GLU B 398 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 616 O HOH B 769 2.14 REMARK 500 O HOH B 723 O HOH B 739 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 41 -60.61 -128.86 REMARK 500 LEU A 67 84.15 73.44 REMARK 500 ASP A 99 77.35 -100.47 REMARK 500 HIS A 248 75.65 -113.33 REMARK 500 TYR A 356 -65.68 -144.06 REMARK 500 HIS B 41 -62.85 -131.35 REMARK 500 ASP B 99 77.13 -100.67 REMARK 500 LEU B 137 77.25 -118.05 REMARK 500 LEU B 137 76.68 -117.66 REMARK 500 SER B 214 -137.48 -127.71 REMARK 500 TYR B 356 -65.79 -143.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ZWI A 504 REMARK 610 ZWI B 504 REMARK 610 ZWI B 505 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ORO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F54 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZWI A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ORO B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F54 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZWI B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZWI B 505 DBREF 6CJF A 33 396 UNP Q02127 PYRD_HUMAN 32 395 DBREF 6CJF B 33 396 UNP Q02127 PYRD_HUMAN 32 395 SEQADV 6CJF LEU A 397 UNP Q02127 EXPRESSION TAG SEQADV 6CJF GLU A 398 UNP Q02127 EXPRESSION TAG SEQADV 6CJF ALA A 399 UNP Q02127 EXPRESSION TAG SEQADV 6CJF GLY A 400 UNP Q02127 EXPRESSION TAG SEQADV 6CJF HIS A 401 UNP Q02127 EXPRESSION TAG SEQADV 6CJF HIS A 402 UNP Q02127 EXPRESSION TAG SEQADV 6CJF HIS A 403 UNP Q02127 EXPRESSION TAG SEQADV 6CJF HIS A 404 UNP Q02127 EXPRESSION TAG SEQADV 6CJF HIS A 405 UNP Q02127 EXPRESSION TAG SEQADV 6CJF HIS A 406 UNP Q02127 EXPRESSION TAG SEQADV 6CJF LEU B 397 UNP Q02127 EXPRESSION TAG SEQADV 6CJF GLU B 398 UNP Q02127 EXPRESSION TAG SEQADV 6CJF ALA B 399 UNP Q02127 EXPRESSION TAG SEQADV 6CJF GLY B 400 UNP Q02127 EXPRESSION TAG SEQADV 6CJF HIS B 401 UNP Q02127 EXPRESSION TAG SEQADV 6CJF HIS B 402 UNP Q02127 EXPRESSION TAG SEQADV 6CJF HIS B 403 UNP Q02127 EXPRESSION TAG SEQADV 6CJF HIS B 404 UNP Q02127 EXPRESSION TAG SEQADV 6CJF HIS B 405 UNP Q02127 EXPRESSION TAG SEQADV 6CJF HIS B 406 UNP Q02127 EXPRESSION TAG SEQRES 1 A 374 GLY ASP GLU ARG PHE TYR ALA GLU HIS LEU MET PRO THR SEQRES 2 A 374 LEU GLN GLY LEU LEU ASP PRO GLU SER ALA HIS ARG LEU SEQRES 3 A 374 ALA VAL ARG PHE THR SER LEU GLY LEU LEU PRO ARG ALA SEQRES 4 A 374 ARG PHE GLN ASP SER ASP MET LEU GLU VAL ARG VAL LEU SEQRES 5 A 374 GLY HIS LYS PHE ARG ASN PRO VAL GLY ILE ALA ALA GLY SEQRES 6 A 374 PHE ASP LYS HIS GLY GLU ALA VAL ASP GLY LEU TYR LYS SEQRES 7 A 374 MET GLY PHE GLY PHE VAL GLU ILE GLY SER VAL THR PRO SEQRES 8 A 374 LYS PRO GLN GLU GLY ASN PRO ARG PRO ARG VAL PHE ARG SEQRES 9 A 374 LEU PRO GLU ASP GLN ALA VAL ILE ASN ARG TYR GLY PHE SEQRES 10 A 374 ASN SER HIS GLY LEU SER VAL VAL GLU HIS ARG LEU ARG SEQRES 11 A 374 ALA ARG GLN GLN LYS GLN ALA LYS LEU THR GLU ASP GLY SEQRES 12 A 374 LEU PRO LEU GLY VAL ASN LEU GLY LYS ASN LYS THR SER SEQRES 13 A 374 VAL ASP ALA ALA GLU ASP TYR ALA GLU GLY VAL ARG VAL SEQRES 14 A 374 LEU GLY PRO LEU ALA ASP TYR LEU VAL VAL ASN VAL SER SEQRES 15 A 374 SER PRO ASN THR ALA GLY LEU ARG SER LEU GLN GLY LYS SEQRES 16 A 374 ALA GLU LEU ARG ARG LEU LEU THR LYS VAL LEU GLN GLU SEQRES 17 A 374 ARG ASP GLY LEU ARG ARG VAL HIS ARG PRO ALA VAL LEU SEQRES 18 A 374 VAL LYS ILE ALA PRO ASP LEU THR SER GLN ASP LYS GLU SEQRES 19 A 374 ASP ILE ALA SER VAL VAL LYS GLU LEU GLY ILE ASP GLY SEQRES 20 A 374 LEU ILE VAL THR ASN THR THR VAL SER ARG PRO ALA GLY SEQRES 21 A 374 LEU GLN GLY ALA LEU ARG SER GLU THR GLY GLY LEU SER SEQRES 22 A 374 GLY LYS PRO LEU ARG ASP LEU SER THR GLN THR ILE ARG SEQRES 23 A 374 GLU MET TYR ALA LEU THR GLN GLY ARG VAL PRO ILE ILE SEQRES 24 A 374 GLY VAL GLY GLY VAL SER SER GLY GLN ASP ALA LEU GLU SEQRES 25 A 374 LYS ILE ARG ALA GLY ALA SER LEU VAL GLN LEU TYR THR SEQRES 26 A 374 ALA LEU THR PHE TRP GLY PRO PRO VAL VAL GLY LYS VAL SEQRES 27 A 374 LYS ARG GLU LEU GLU ALA LEU LEU LYS GLU GLN GLY PHE SEQRES 28 A 374 GLY GLY VAL THR ASP ALA ILE GLY ALA ASP HIS ARG ARG SEQRES 29 A 374 LEU GLU ALA GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 374 GLY ASP GLU ARG PHE TYR ALA GLU HIS LEU MET PRO THR SEQRES 2 B 374 LEU GLN GLY LEU LEU ASP PRO GLU SER ALA HIS ARG LEU SEQRES 3 B 374 ALA VAL ARG PHE THR SER LEU GLY LEU LEU PRO ARG ALA SEQRES 4 B 374 ARG PHE GLN ASP SER ASP MET LEU GLU VAL ARG VAL LEU SEQRES 5 B 374 GLY HIS LYS PHE ARG ASN PRO VAL GLY ILE ALA ALA GLY SEQRES 6 B 374 PHE ASP LYS HIS GLY GLU ALA VAL ASP GLY LEU TYR LYS SEQRES 7 B 374 MET GLY PHE GLY PHE VAL GLU ILE GLY SER VAL THR PRO SEQRES 8 B 374 LYS PRO GLN GLU GLY ASN PRO ARG PRO ARG VAL PHE ARG SEQRES 9 B 374 LEU PRO GLU ASP GLN ALA VAL ILE ASN ARG TYR GLY PHE SEQRES 10 B 374 ASN SER HIS GLY LEU SER VAL VAL GLU HIS ARG LEU ARG SEQRES 11 B 374 ALA ARG GLN GLN LYS GLN ALA LYS LEU THR GLU ASP GLY SEQRES 12 B 374 LEU PRO LEU GLY VAL ASN LEU GLY LYS ASN LYS THR SER SEQRES 13 B 374 VAL ASP ALA ALA GLU ASP TYR ALA GLU GLY VAL ARG VAL SEQRES 14 B 374 LEU GLY PRO LEU ALA ASP TYR LEU VAL VAL ASN VAL SER SEQRES 15 B 374 SER PRO ASN THR ALA GLY LEU ARG SER LEU GLN GLY LYS SEQRES 16 B 374 ALA GLU LEU ARG ARG LEU LEU THR LYS VAL LEU GLN GLU SEQRES 17 B 374 ARG ASP GLY LEU ARG ARG VAL HIS ARG PRO ALA VAL LEU SEQRES 18 B 374 VAL LYS ILE ALA PRO ASP LEU THR SER GLN ASP LYS GLU SEQRES 19 B 374 ASP ILE ALA SER VAL VAL LYS GLU LEU GLY ILE ASP GLY SEQRES 20 B 374 LEU ILE VAL THR ASN THR THR VAL SER ARG PRO ALA GLY SEQRES 21 B 374 LEU GLN GLY ALA LEU ARG SER GLU THR GLY GLY LEU SER SEQRES 22 B 374 GLY LYS PRO LEU ARG ASP LEU SER THR GLN THR ILE ARG SEQRES 23 B 374 GLU MET TYR ALA LEU THR GLN GLY ARG VAL PRO ILE ILE SEQRES 24 B 374 GLY VAL GLY GLY VAL SER SER GLY GLN ASP ALA LEU GLU SEQRES 25 B 374 LYS ILE ARG ALA GLY ALA SER LEU VAL GLN LEU TYR THR SEQRES 26 B 374 ALA LEU THR PHE TRP GLY PRO PRO VAL VAL GLY LYS VAL SEQRES 27 B 374 LYS ARG GLU LEU GLU ALA LEU LEU LYS GLU GLN GLY PHE SEQRES 28 B 374 GLY GLY VAL THR ASP ALA ILE GLY ALA ASP HIS ARG ARG SEQRES 29 B 374 LEU GLU ALA GLY HIS HIS HIS HIS HIS HIS HET FMN A 501 31 HET ORO A 502 11 HET F54 A 503 37 HET ZWI A 504 9 HET FMN B 501 31 HET ORO B 502 11 HET F54 B 503 37 HET ZWI B 504 7 HET ZWI B 505 22 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM ORO OROTIC ACID HETNAM F54 2-[4-(2-CHLORO-6-METHYLPYRIDIN-3-YL)PHENYL]-6-FLUORO-3- HETNAM 2 F54 METHYLQUINOLINE-4-CARBOXYLIC ACID HETNAM ZWI 3-[DECYL(DIMETHYL)AMMONIO]PROPANE-1-SULFONATE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 ORO 2(C5 H4 N2 O4) FORMUL 5 F54 2(C23 H16 CL F N2 O2) FORMUL 6 ZWI 3(C15 H33 N O3 S) FORMUL 12 HOH *365(H2 O) HELIX 1 AA1 ASP A 34 HIS A 41 1 8 HELIX 2 AA2 HIS A 41 LEU A 50 1 10 HELIX 3 AA3 ASP A 51 GLY A 66 1 16 HELIX 4 AA4 SER A 76 GLU A 80 5 5 HELIX 5 AA5 ALA A 104 MET A 111 1 8 HELIX 6 AA6 PRO A 138 ASP A 140 5 3 HELIX 7 AA7 GLY A 153 ARG A 164 1 12 HELIX 8 AA8 ARG A 164 ASP A 174 1 11 HELIX 9 AA9 ASP A 190 GLY A 203 1 14 HELIX 10 AB1 PRO A 204 ALA A 206 5 3 HELIX 11 AB2 LYS A 227 GLY A 243 1 17 HELIX 12 AB3 THR A 261 GLY A 276 1 16 HELIX 13 AB4 LEU A 309 THR A 324 1 16 HELIX 14 AB5 SER A 338 GLY A 349 1 12 HELIX 15 AB6 TYR A 356 GLY A 363 1 8 HELIX 16 AB7 PRO A 365 GLN A 381 1 17 HELIX 17 AB8 GLY A 385 ILE A 390 1 6 HELIX 18 AB9 GLY A 391 ALA A 399 1 9 HELIX 19 AC1 PHE B 37 HIS B 41 1 5 HELIX 20 AC2 HIS B 41 LEU B 50 1 10 HELIX 21 AC3 ASP B 51 GLY B 66 1 16 HELIX 22 AC4 SER B 76 GLU B 80 5 5 HELIX 23 AC5 ALA B 104 MET B 111 1 8 HELIX 24 AC6 PRO B 138 ASP B 140 5 3 HELIX 25 AC7 GLY B 153 ARG B 164 1 12 HELIX 26 AC8 ARG B 164 ASP B 174 1 11 HELIX 27 AC9 ASP B 190 GLY B 203 1 14 HELIX 28 AD1 PRO B 204 ALA B 206 5 3 HELIX 29 AD2 GLN B 225 GLY B 243 1 19 HELIX 30 AD3 THR B 261 GLY B 276 1 16 HELIX 31 AD4 LEU B 309 THR B 324 1 16 HELIX 32 AD5 SER B 338 GLY B 349 1 12 HELIX 33 AD6 TYR B 356 GLY B 363 1 8 HELIX 34 AD7 PRO B 364 GLN B 381 1 18 HELIX 35 AD8 GLY B 385 ILE B 390 1 6 HELIX 36 AD9 GLY B 391 ALA B 399 1 9 SHEET 1 AA1 2 VAL A 81 VAL A 83 0 SHEET 2 AA1 2 HIS A 86 PHE A 88 -1 O PHE A 88 N VAL A 81 SHEET 1 AA2 9 VAL A 92 ILE A 94 0 SHEET 2 AA2 9 PHE A 115 VAL A 121 1 O PHE A 115 N ILE A 94 SHEET 3 AA2 9 LEU A 178 LEU A 182 1 O GLY A 179 N VAL A 116 SHEET 4 AA2 9 TYR A 208 ASN A 212 1 O VAL A 210 N LEU A 182 SHEET 5 AA2 9 ALA A 251 ILE A 256 1 O LEU A 253 N LEU A 209 SHEET 6 AA2 9 GLY A 279 VAL A 282 1 O ILE A 281 N VAL A 254 SHEET 7 AA2 9 ILE A 330 VAL A 333 1 O ILE A 331 N VAL A 282 SHEET 8 AA2 9 LEU A 352 LEU A 355 1 O LEU A 352 N GLY A 332 SHEET 9 AA2 9 VAL A 92 ILE A 94 1 N GLY A 93 O VAL A 353 SHEET 1 AA3 3 VAL A 134 LEU A 137 0 SHEET 2 AA3 3 ALA A 142 ASN A 145 -1 O ILE A 144 N PHE A 135 SHEET 3 AA3 3 GLY A 303 GLY A 306 -1 O GLY A 303 N ASN A 145 SHEET 1 AA4 2 VAL B 81 VAL B 83 0 SHEET 2 AA4 2 HIS B 86 PHE B 88 -1 O PHE B 88 N VAL B 81 SHEET 1 AA5 9 VAL B 92 ILE B 94 0 SHEET 2 AA5 9 PHE B 115 VAL B 121 1 O PHE B 115 N ILE B 94 SHEET 3 AA5 9 LEU B 178 LEU B 182 1 O GLY B 179 N VAL B 116 SHEET 4 AA5 9 TYR B 208 VAL B 213 1 O VAL B 210 N LEU B 182 SHEET 5 AA5 9 ALA B 251 ILE B 256 1 O LEU B 253 N LEU B 209 SHEET 6 AA5 9 GLY B 279 VAL B 282 1 O ILE B 281 N VAL B 254 SHEET 7 AA5 9 ILE B 330 VAL B 333 1 O ILE B 331 N LEU B 280 SHEET 8 AA5 9 LEU B 352 LEU B 355 1 O LEU B 352 N GLY B 332 SHEET 9 AA5 9 VAL B 92 ILE B 94 1 N GLY B 93 O VAL B 353 SHEET 1 AA6 3 VAL B 134 LEU B 137 0 SHEET 2 AA6 3 ALA B 142 ASN B 145 -1 O ILE B 144 N PHE B 135 SHEET 3 AA6 3 GLY B 303 GLY B 306 -1 O GLY B 303 N ASN B 145 CISPEP 1 GLY A 119 SER A 120 0 4.67 CISPEP 2 ARG A 131 PRO A 132 0 -1.50 CISPEP 3 VAL A 282 THR A 283 0 11.65 CISPEP 4 GLY B 119 SER B 120 0 4.95 CISPEP 5 ARG B 131 PRO B 132 0 -2.42 CISPEP 6 VAL B 282 THR B 283 0 13.38 SITE 1 AC1 25 ALA A 95 ALA A 96 GLY A 97 LYS A 100 SITE 2 AC1 25 SER A 120 ASN A 145 ASN A 181 ASN A 212 SITE 3 AC1 25 LYS A 255 THR A 283 ASN A 284 THR A 285 SITE 4 AC1 25 SER A 305 GLY A 306 LEU A 309 VAL A 333 SITE 5 AC1 25 GLY A 334 GLY A 335 LEU A 355 TYR A 356 SITE 6 AC1 25 THR A 357 ORO A 502 HOH A 615 HOH A 620 SITE 7 AC1 25 HOH A 675 SITE 1 AC2 9 LYS A 100 ASN A 145 TYR A 147 GLY A 148 SITE 2 AC2 9 PHE A 149 ASN A 212 ASN A 284 THR A 285 SITE 3 AC2 9 FMN A 501 SITE 1 AC3 18 TYR A 38 MET A 43 LEU A 46 GLN A 47 SITE 2 AC3 18 PRO A 52 ALA A 55 HIS A 56 ALA A 59 SITE 3 AC3 18 PHE A 62 THR A 63 LEU A 67 VAL A 134 SITE 4 AC3 18 ARG A 136 TYR A 356 THR A 360 PRO A 364 SITE 5 AC3 18 ZWI A 504 HOH A 610 SITE 1 AC4 3 TYR A 38 PHE A 62 F54 A 503 SITE 1 AC5 25 ALA B 95 ALA B 96 GLY B 97 LYS B 100 SITE 2 AC5 25 SER B 120 ASN B 145 ASN B 181 ASN B 212 SITE 3 AC5 25 LYS B 255 THR B 283 ASN B 284 THR B 285 SITE 4 AC5 25 SER B 305 GLY B 306 LEU B 309 VAL B 333 SITE 5 AC5 25 GLY B 334 GLY B 335 LEU B 355 TYR B 356 SITE 6 AC5 25 THR B 357 ORO B 502 HOH B 627 HOH B 628 SITE 7 AC5 25 HOH B 673 SITE 1 AC6 9 LYS B 100 ASN B 145 TYR B 147 GLY B 148 SITE 2 AC6 9 PHE B 149 ASN B 212 ASN B 284 THR B 285 SITE 3 AC6 9 FMN B 501 SITE 1 AC7 19 TYR B 38 MET B 43 LEU B 46 GLN B 47 SITE 2 AC7 19 PRO B 52 ALA B 55 HIS B 56 ALA B 59 SITE 3 AC7 19 PHE B 62 THR B 63 LEU B 68 VAL B 134 SITE 4 AC7 19 ARG B 136 TYR B 356 THR B 360 PRO B 364 SITE 5 AC7 19 ZWI B 504 HOH B 620 HOH B 732 SITE 1 AC8 2 PHE B 62 F54 B 503 SITE 1 AC9 4 LEU B 84 GLY B 85 ARG B 241 ARG B 249 CRYST1 50.752 51.527 65.088 89.15 81.61 76.44 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019704 -0.004753 -0.003001 0.00000 SCALE2 0.000000 0.019964 0.000403 0.00000 SCALE3 0.000000 0.000000 0.015533 0.00000