HEADER HYDROLASE/ANTIBIOTIC 27-FEB-18 6CK7 TITLE CRYSTAL STRUCTURE OF A PEPTIDE DEFORMYLASE FROM LEGIONELLA PNEUMOPHILA TITLE 2 BOUND TO ACTINONIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE DEFORMYLASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PDF, POLYPEPTIDE DEFORMYLASE; COMPND 5 EC: 3.5.1.88; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 ATCC: 33152; SOURCE 5 GENE: DEF_2, DEF, DEF_1, DEF_3, A1D14_13265, A9P85_13750, SOURCE 6 ERS240541_01674, ERS240560_02189, ERS253249_00325, LPYMG_02824; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES, NIAID, KEYWDS 2 STRUCTURAL GENOMICS, LEGIONNAIRES' DISEASE, FORMYL-L-METHIONYL KEYWDS 3 PEPTIDE, FORMATE, METHIONYL PEPTIDE, SEATTLE STRUCTURAL GENOMICS KEYWDS 4 CENTER FOR INFECTIOUS DISEASE, SSGCID, HYDROLASE-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 04-OCT-23 6CK7 1 LINK REVDAT 1 07-MAR-18 6CK7 0 JRNL AUTH T.E.EDWARDS,P.S.HORANYI,D.D.LORIMER JRNL TITL CRYSTAL STRUCTURE OF A PEPTIDE DEFORMYLASE FROM LEGIONELLA JRNL TITL 2 PNEUMOPHILA BOUND TO ACTINONIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 119355 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.630 REMARK 3 FREE R VALUE TEST SET COUNT : 1947 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.4063 - 3.9757 0.97 8461 103 0.1708 0.1933 REMARK 3 2 3.9757 - 3.1559 0.97 8320 131 0.1738 0.1900 REMARK 3 3 3.1559 - 2.7571 0.97 8325 153 0.1872 0.2223 REMARK 3 4 2.7571 - 2.5050 0.98 8381 150 0.1877 0.2067 REMARK 3 5 2.5050 - 2.3255 0.98 8417 129 0.1838 0.2074 REMARK 3 6 2.3255 - 2.1884 0.98 8408 158 0.1800 0.2100 REMARK 3 7 2.1884 - 2.0788 0.99 8429 173 0.1738 0.2003 REMARK 3 8 2.0788 - 1.9883 0.99 8467 161 0.1818 0.2196 REMARK 3 9 1.9883 - 1.9118 0.99 8465 116 0.1952 0.2198 REMARK 3 10 1.9118 - 1.8458 0.99 8461 168 0.2000 0.2278 REMARK 3 11 1.8458 - 1.7881 1.00 8497 122 0.1938 0.2368 REMARK 3 12 1.7881 - 1.7370 1.00 8562 136 0.2010 0.2172 REMARK 3 13 1.7370 - 1.6912 0.99 8483 137 0.2210 0.2366 REMARK 3 14 1.6912 - 1.6500 0.91 7732 110 0.2358 0.2861 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 28 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9123 20.0808 34.7534 REMARK 3 T TENSOR REMARK 3 T11: 0.2095 T22: 0.1464 REMARK 3 T33: 0.2352 T12: -0.0482 REMARK 3 T13: -0.0718 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 2.5931 L22: 2.4074 REMARK 3 L33: 6.1677 L12: -0.0525 REMARK 3 L13: 0.4051 L23: -1.1542 REMARK 3 S TENSOR REMARK 3 S11: -0.0558 S12: -0.0999 S13: 0.1607 REMARK 3 S21: 0.4339 S22: -0.0294 S23: -0.2965 REMARK 3 S31: -0.3796 S32: 0.3542 S33: 0.0881 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.7122 20.3671 37.6374 REMARK 3 T TENSOR REMARK 3 T11: 0.1826 T22: 0.1321 REMARK 3 T33: 0.1849 T12: 0.0239 REMARK 3 T13: 0.0255 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 5.8893 L22: 3.3501 REMARK 3 L33: 8.1813 L12: 0.5607 REMARK 3 L13: 4.9855 L23: -1.6324 REMARK 3 S TENSOR REMARK 3 S11: -0.1062 S12: -0.2919 S13: 0.1002 REMARK 3 S21: 0.4338 S22: 0.0128 S23: 0.0906 REMARK 3 S31: -0.5004 S32: -0.3150 S33: 0.1251 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6371 14.2441 32.3696 REMARK 3 T TENSOR REMARK 3 T11: 0.1160 T22: 0.1245 REMARK 3 T33: 0.1083 T12: 0.0177 REMARK 3 T13: 0.0207 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 3.7045 L22: 6.1034 REMARK 3 L33: 5.3154 L12: 0.4044 REMARK 3 L13: 0.7714 L23: -0.8477 REMARK 3 S TENSOR REMARK 3 S11: -0.0156 S12: -0.1122 S13: -0.1475 REMARK 3 S21: 0.2265 S22: -0.0534 S23: 0.0839 REMARK 3 S31: 0.0421 S32: -0.2336 S33: 0.0958 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2656 2.5695 33.2548 REMARK 3 T TENSOR REMARK 3 T11: 0.2591 T22: 0.1663 REMARK 3 T33: 0.2596 T12: 0.0014 REMARK 3 T13: -0.0222 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.3608 L22: 3.8410 REMARK 3 L33: 5.0789 L12: 0.7299 REMARK 3 L13: 0.4355 L23: -0.0297 REMARK 3 S TENSOR REMARK 3 S11: 0.0781 S12: 0.0166 S13: -0.2076 REMARK 3 S21: 0.1920 S22: -0.0789 S23: -0.0214 REMARK 3 S31: 0.8131 S32: 0.0025 S33: 0.0131 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8925 5.1523 32.5751 REMARK 3 T TENSOR REMARK 3 T11: 0.2401 T22: 0.1721 REMARK 3 T33: 0.2224 T12: 0.0104 REMARK 3 T13: -0.0168 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.5048 L22: 1.7721 REMARK 3 L33: 4.2092 L12: 0.1628 REMARK 3 L13: -0.2320 L23: 0.0165 REMARK 3 S TENSOR REMARK 3 S11: 0.0102 S12: -0.0172 S13: -0.1522 REMARK 3 S21: 0.2753 S22: -0.0130 S23: -0.1215 REMARK 3 S31: 0.5792 S32: -0.0371 S33: 0.0065 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6815 6.8016 22.9116 REMARK 3 T TENSOR REMARK 3 T11: 0.1763 T22: 0.2686 REMARK 3 T33: 0.2998 T12: 0.0379 REMARK 3 T13: -0.0071 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 5.8598 L22: 5.8460 REMARK 3 L33: 7.1680 L12: -2.0500 REMARK 3 L13: -3.8415 L23: 5.2563 REMARK 3 S TENSOR REMARK 3 S11: -0.1064 S12: 0.0584 S13: -0.3420 REMARK 3 S21: 0.2758 S22: 0.0967 S23: -0.5943 REMARK 3 S31: 0.1475 S32: -0.0057 S33: -0.0143 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 149 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6650 18.6014 12.3999 REMARK 3 T TENSOR REMARK 3 T11: 0.1985 T22: 0.3373 REMARK 3 T33: 0.2739 T12: -0.0778 REMARK 3 T13: -0.0278 T23: 0.0536 REMARK 3 L TENSOR REMARK 3 L11: 9.4671 L22: 4.7384 REMARK 3 L33: 4.7553 L12: -6.2832 REMARK 3 L13: 2.6851 L23: -3.3044 REMARK 3 S TENSOR REMARK 3 S11: 0.0126 S12: 0.8733 S13: 0.5897 REMARK 3 S21: -0.4792 S22: -0.2973 S23: -0.4891 REMARK 3 S31: -0.2325 S32: 0.5009 S33: 0.2944 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8356 24.9469 9.8940 REMARK 3 T TENSOR REMARK 3 T11: 0.2218 T22: 0.1995 REMARK 3 T33: 0.2829 T12: 0.0163 REMARK 3 T13: -0.0502 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 2.7363 L22: 6.7186 REMARK 3 L33: 4.3196 L12: 3.8326 REMARK 3 L13: -2.4822 L23: -3.0394 REMARK 3 S TENSOR REMARK 3 S11: -0.0961 S12: 0.2106 S13: 0.3371 REMARK 3 S21: -0.2782 S22: 0.0750 S23: 0.0491 REMARK 3 S31: -0.4574 S32: -0.1960 S33: -0.1149 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8081 20.1212 2.9777 REMARK 3 T TENSOR REMARK 3 T11: 0.2455 T22: 0.1878 REMARK 3 T33: 0.1815 T12: -0.0231 REMARK 3 T13: -0.0418 T23: 0.0284 REMARK 3 L TENSOR REMARK 3 L11: 3.6048 L22: 2.4999 REMARK 3 L33: 3.0932 L12: 0.4389 REMARK 3 L13: 0.7296 L23: -0.4791 REMARK 3 S TENSOR REMARK 3 S11: -0.1682 S12: 0.3640 S13: 0.3593 REMARK 3 S21: -0.5004 S22: 0.0758 S23: 0.1315 REMARK 3 S31: -0.2519 S32: -0.0424 S33: 0.0952 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 53 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3126 13.2937 1.3417 REMARK 3 T TENSOR REMARK 3 T11: 0.2439 T22: 0.2193 REMARK 3 T33: 0.1815 T12: -0.0422 REMARK 3 T13: 0.0573 T23: 0.0281 REMARK 3 L TENSOR REMARK 3 L11: 2.6209 L22: 8.0078 REMARK 3 L33: 6.0234 L12: -0.6028 REMARK 3 L13: 1.4880 L23: 0.2320 REMARK 3 S TENSOR REMARK 3 S11: -0.0518 S12: 0.3569 S13: 0.0601 REMARK 3 S21: -0.5192 S22: 0.0672 S23: -0.5174 REMARK 3 S31: 0.1066 S32: 0.3629 S33: -0.0015 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 77 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7350 -0.9429 8.4953 REMARK 3 T TENSOR REMARK 3 T11: 0.2463 T22: 0.2198 REMARK 3 T33: 0.2391 T12: -0.0277 REMARK 3 T13: -0.0236 T23: -0.0451 REMARK 3 L TENSOR REMARK 3 L11: 3.0375 L22: 5.9984 REMARK 3 L33: 7.8229 L12: 1.7788 REMARK 3 L13: 4.0558 L23: 3.4979 REMARK 3 S TENSOR REMARK 3 S11: 0.2597 S12: 0.1880 S13: -0.3148 REMARK 3 S21: -0.0528 S22: 0.0914 S23: 0.1027 REMARK 3 S31: 0.9089 S32: 0.0027 S33: -0.3490 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3664 7.2672 16.7061 REMARK 3 T TENSOR REMARK 3 T11: 0.0951 T22: 0.1919 REMARK 3 T33: 0.1735 T12: -0.0095 REMARK 3 T13: 0.0319 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 2.2424 L22: 3.0284 REMARK 3 L33: 6.9346 L12: 2.6006 REMARK 3 L13: 2.6818 L23: 2.9688 REMARK 3 S TENSOR REMARK 3 S11: 0.0974 S12: -0.0030 S13: -0.0310 REMARK 3 S21: 0.2017 S22: -0.0333 S23: -0.0586 REMARK 3 S31: 0.3660 S32: -0.1422 S33: -0.1114 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 106 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.5546 7.7199 -5.4764 REMARK 3 T TENSOR REMARK 3 T11: 0.4683 T22: 0.3281 REMARK 3 T33: 0.1842 T12: -0.0238 REMARK 3 T13: 0.0045 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 0.7804 L22: 1.4406 REMARK 3 L33: 3.3179 L12: -0.6210 REMARK 3 L13: 0.0446 L23: 0.6921 REMARK 3 S TENSOR REMARK 3 S11: -0.0021 S12: 0.2799 S13: -0.1134 REMARK 3 S21: -1.4229 S22: -0.1838 S23: -0.3674 REMARK 3 S31: 0.4290 S32: 0.4733 S33: 0.0465 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 118 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4539 5.6945 3.8011 REMARK 3 T TENSOR REMARK 3 T11: 0.2214 T22: 0.2046 REMARK 3 T33: 0.1536 T12: -0.0403 REMARK 3 T13: -0.0051 T23: -0.0348 REMARK 3 L TENSOR REMARK 3 L11: 2.4882 L22: 2.7216 REMARK 3 L33: 5.7727 L12: -0.0355 REMARK 3 L13: 0.8887 L23: -0.5520 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: 0.2686 S13: -0.1483 REMARK 3 S21: -0.4335 S22: 0.1156 S23: -0.0126 REMARK 3 S31: 0.4007 S32: 0.1702 S33: -0.0977 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 140 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.1738 7.3579 15.1663 REMARK 3 T TENSOR REMARK 3 T11: 0.1469 T22: 0.2530 REMARK 3 T33: 0.2479 T12: -0.0302 REMARK 3 T13: 0.0073 T23: -0.0192 REMARK 3 L TENSOR REMARK 3 L11: 6.5156 L22: 8.6871 REMARK 3 L33: 6.7699 L12: 0.9386 REMARK 3 L13: -1.4873 L23: -5.9239 REMARK 3 S TENSOR REMARK 3 S11: -0.2163 S12: 0.0843 S13: -0.3284 REMARK 3 S21: -0.1946 S22: 0.4132 S23: 0.4557 REMARK 3 S31: 0.2713 S32: -0.4163 S33: -0.2454 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 149 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1437 17.7138 27.0124 REMARK 3 T TENSOR REMARK 3 T11: 0.2040 T22: 0.3835 REMARK 3 T33: 0.3168 T12: 0.0937 REMARK 3 T13: -0.0273 T23: -0.0672 REMARK 3 L TENSOR REMARK 3 L11: 4.6997 L22: 5.6573 REMARK 3 L33: 4.1646 L12: 5.1041 REMARK 3 L13: 2.9520 L23: 3.4295 REMARK 3 S TENSOR REMARK 3 S11: -0.0359 S12: -0.7696 S13: 0.2476 REMARK 3 S21: 0.4691 S22: -0.2234 S23: 0.0715 REMARK 3 S31: -0.2393 S32: -0.4392 S33: 0.3611 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID -1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8250 37.3124 8.4929 REMARK 3 T TENSOR REMARK 3 T11: 0.2967 T22: 0.1247 REMARK 3 T33: 0.1620 T12: 0.0540 REMARK 3 T13: 0.0620 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 8.7021 L22: 6.1294 REMARK 3 L33: 6.8385 L12: 4.1386 REMARK 3 L13: 3.4784 L23: 0.6705 REMARK 3 S TENSOR REMARK 3 S11: 0.1853 S12: 0.1210 S13: -0.4541 REMARK 3 S21: -0.2728 S22: -0.0902 S23: -0.0419 REMARK 3 S31: 0.5760 S32: 0.1060 S33: -0.0944 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 12 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9403 44.6296 -3.5999 REMARK 3 T TENSOR REMARK 3 T11: 0.4005 T22: 0.3802 REMARK 3 T33: 0.1089 T12: 0.0370 REMARK 3 T13: 0.1501 T23: 0.0508 REMARK 3 L TENSOR REMARK 3 L11: 4.3842 L22: 4.0148 REMARK 3 L33: 0.1087 L12: 0.6094 REMARK 3 L13: -0.3723 L23: 0.4631 REMARK 3 S TENSOR REMARK 3 S11: -0.2493 S12: 0.6044 S13: -0.1055 REMARK 3 S21: -0.8227 S22: -0.0163 S23: 0.1537 REMARK 3 S31: 0.2180 S32: 0.3386 S33: -0.0085 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 26 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1522 40.5526 5.3185 REMARK 3 T TENSOR REMARK 3 T11: 0.2395 T22: 0.1452 REMARK 3 T33: 0.2090 T12: -0.0253 REMARK 3 T13: 0.0125 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 4.0513 L22: 3.2258 REMARK 3 L33: 2.5325 L12: -0.9067 REMARK 3 L13: 2.1700 L23: -2.4178 REMARK 3 S TENSOR REMARK 3 S11: 0.1120 S12: 0.0308 S13: -0.1515 REMARK 3 S21: -0.3561 S22: 0.0660 S23: 0.2927 REMARK 3 S31: 0.3549 S32: -0.0072 S33: -0.1591 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 42 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3275 46.8217 7.5304 REMARK 3 T TENSOR REMARK 3 T11: 0.1467 T22: 0.0984 REMARK 3 T33: 0.1422 T12: -0.0221 REMARK 3 T13: -0.0054 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 5.0546 L22: 5.9821 REMARK 3 L33: 7.1432 L12: -0.6611 REMARK 3 L13: 0.7982 L23: -0.8409 REMARK 3 S TENSOR REMARK 3 S11: -0.0699 S12: -0.0605 S13: 0.2414 REMARK 3 S21: -0.1683 S22: -0.0840 S23: 0.2942 REMARK 3 S31: -0.0097 S32: -0.2493 S33: 0.1020 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 67 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1708 56.2413 7.3294 REMARK 3 T TENSOR REMARK 3 T11: 0.3155 T22: 0.1726 REMARK 3 T33: 0.2706 T12: 0.0032 REMARK 3 T13: -0.0590 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 1.3508 L22: 1.7889 REMARK 3 L33: 3.4803 L12: -0.2087 REMARK 3 L13: 1.6088 L23: -0.3785 REMARK 3 S TENSOR REMARK 3 S11: -0.4157 S12: 0.0754 S13: 0.4313 REMARK 3 S21: -0.1937 S22: -0.0654 S23: 0.0153 REMARK 3 S31: -0.7223 S32: 0.0370 S33: 0.3876 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 118 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0310 56.1604 7.0089 REMARK 3 T TENSOR REMARK 3 T11: 0.3029 T22: 0.1754 REMARK 3 T33: 0.2513 T12: -0.0442 REMARK 3 T13: -0.0423 T23: 0.0588 REMARK 3 L TENSOR REMARK 3 L11: 2.7461 L22: 2.2107 REMARK 3 L33: 4.9540 L12: -0.9275 REMARK 3 L13: 2.4421 L23: -0.3636 REMARK 3 S TENSOR REMARK 3 S11: -0.3364 S12: 0.1663 S13: 0.4116 REMARK 3 S21: -0.3481 S22: -0.0374 S23: -0.0598 REMARK 3 S31: -0.4603 S32: 0.2023 S33: 0.3425 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 149 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5806 43.1151 21.8581 REMARK 3 T TENSOR REMARK 3 T11: 0.2179 T22: 0.3518 REMARK 3 T33: 0.3012 T12: 0.0882 REMARK 3 T13: 0.0320 T23: 0.0554 REMARK 3 L TENSOR REMARK 3 L11: 4.5824 L22: 4.3643 REMARK 3 L33: 7.2040 L12: 4.1194 REMARK 3 L13: -2.6915 L23: -3.4709 REMARK 3 S TENSOR REMARK 3 S11: -0.1526 S12: -0.3813 S13: -0.2393 REMARK 3 S21: 0.0115 S22: -0.3504 S23: -0.7517 REMARK 3 S31: 0.5394 S32: 0.9082 S33: 0.5062 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN 'D' AND (RESID -1 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1868 38.7741 39.4497 REMARK 3 T TENSOR REMARK 3 T11: 0.3808 T22: 0.1998 REMARK 3 T33: 0.2151 T12: -0.0222 REMARK 3 T13: 0.0956 T23: 0.0562 REMARK 3 L TENSOR REMARK 3 L11: 3.9466 L22: 2.3335 REMARK 3 L33: 4.7911 L12: -1.0165 REMARK 3 L13: 0.8398 L23: 1.4297 REMARK 3 S TENSOR REMARK 3 S11: -0.0979 S12: -0.3436 S13: -0.2770 REMARK 3 S21: 0.5438 S22: 0.0442 S23: 0.0092 REMARK 3 S31: 0.5254 S32: -0.1437 S33: 0.0611 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 26 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1057 43.5686 36.5796 REMARK 3 T TENSOR REMARK 3 T11: 0.1955 T22: 0.1419 REMARK 3 T33: 0.1680 T12: 0.0440 REMARK 3 T13: 0.0131 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 2.8563 L22: 3.9253 REMARK 3 L33: 6.5210 L12: -0.5397 REMARK 3 L13: 0.3336 L23: -0.3151 REMARK 3 S TENSOR REMARK 3 S11: -0.1679 S12: -0.0729 S13: -0.0092 REMARK 3 S21: 0.2070 S22: 0.0474 S23: -0.2856 REMARK 3 S31: 0.2182 S32: 0.2610 S33: 0.1322 REMARK 3 TLS GROUP : 26 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 77 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1581 62.1437 35.1893 REMARK 3 T TENSOR REMARK 3 T11: 0.3027 T22: 0.2362 REMARK 3 T33: 0.2440 T12: 0.0486 REMARK 3 T13: -0.0161 T23: -0.0558 REMARK 3 L TENSOR REMARK 3 L11: 3.1160 L22: 8.2442 REMARK 3 L33: 8.6603 L12: 1.4397 REMARK 3 L13: 2.8386 L23: 5.5424 REMARK 3 S TENSOR REMARK 3 S11: -0.2810 S12: -0.1717 S13: 0.2130 REMARK 3 S21: -0.0109 S22: 0.0694 S23: 0.1081 REMARK 3 S31: -0.7479 S32: -0.0943 S33: 0.3024 REMARK 3 TLS GROUP : 27 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 90 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9158 54.1129 36.6517 REMARK 3 T TENSOR REMARK 3 T11: 0.2184 T22: 0.2036 REMARK 3 T33: 0.1761 T12: 0.0370 REMARK 3 T13: -0.0085 T23: -0.0419 REMARK 3 L TENSOR REMARK 3 L11: 1.2609 L22: 2.6629 REMARK 3 L33: 3.3915 L12: 0.4689 REMARK 3 L13: 1.0519 L23: 0.7115 REMARK 3 S TENSOR REMARK 3 S11: -0.1384 S12: -0.0813 S13: 0.0213 REMARK 3 S21: 0.3365 S22: 0.0908 S23: -0.1899 REMARK 3 S31: -0.1428 S32: 0.1993 S33: 0.0710 REMARK 3 TLS GROUP : 28 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 140 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3659 45.6654 23.6048 REMARK 3 T TENSOR REMARK 3 T11: 0.2019 T22: 0.2957 REMARK 3 T33: 0.2253 T12: -0.0802 REMARK 3 T13: 0.0850 T23: -0.0383 REMARK 3 L TENSOR REMARK 3 L11: 3.9675 L22: 5.0023 REMARK 3 L33: 4.6315 L12: -1.4567 REMARK 3 L13: 0.5034 L23: 1.1159 REMARK 3 S TENSOR REMARK 3 S11: -0.1130 S12: 0.1475 S13: -0.1538 REMARK 3 S21: -0.0145 S22: -0.2604 S23: 0.4369 REMARK 3 S31: 0.3397 S32: -0.7629 S33: 0.3955 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CK7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1000232908. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97741 REMARK 200 MONOCHROMATOR : SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 119433 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 43.391 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.162 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.21 REMARK 200 R MERGE FOR SHELL (I) : 0.31100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 6CAZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16.2 MG/ML LEPNA.00882.A.B1.PW38390 + REMARK 280 2 MM ACTINONIN AGAINST WIZ III/IV SCREEN CONDITION C6 (25.5% REMARK 280 PEG4000, 0.17 M AMMONIUM, 15% GLYCEROL), CRYOPROTECTION: DIRECT, REMARK 280 CRYSTAL TRACKING ID 297899C6, UNIQUE PUCK ID IAP4-1, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 66.03000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -128.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 MET C -7 REMARK 465 ALA C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 MET D -7 REMARK 465 ALA D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -1 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 LYS A 67 CG CD CE NZ REMARK 470 LYS A 117 CG CD CE NZ REMARK 470 ARG A 157 CG CD NE CZ NH1 NH2 REMARK 470 HIS B -1 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 16 CG CD CE NZ REMARK 470 LYS B 67 CG CD CE NZ REMARK 470 LYS B 68 CG CD CE NZ REMARK 470 MET B 153 CG SD CE REMARK 470 HIS C -1 CG ND1 CD2 CE1 NE2 REMARK 470 GLU C 12 CG CD OE1 OE2 REMARK 470 LYS C 19 CG CD CE NZ REMARK 470 GLU C 26 CG CD OE1 OE2 REMARK 470 LYS C 68 CG CD CE NZ REMARK 470 GLU C 77 CG CD OE1 OE2 REMARK 470 GLU C 84 CG CD OE1 OE2 REMARK 470 ARG C 156 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 12 CG CD OE1 OE2 REMARK 470 LYS D 67 CG CD CE NZ REMARK 470 LYS D 68 CG CD CE NZ REMARK 470 ARG D 157 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 327 O HOH A 453 2.16 REMARK 500 O LYS A 16 O HOH A 301 2.17 REMARK 500 O LYS B 16 O HOH B 301 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 1 -65.95 -124.39 REMARK 500 MET C 1 -64.41 -100.50 REMARK 500 PRO C 10 30.07 -97.85 REMARK 500 MET D 1 -66.85 -99.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 91 SG REMARK 620 2 HIS A 133 NE2 113.5 REMARK 620 3 HIS A 137 NE2 96.8 102.5 REMARK 620 4 BB2 A 202 O4 99.6 102.6 141.4 REMARK 620 5 BB2 A 202 O2 157.2 88.8 82.4 69.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 91 SG REMARK 620 2 HIS B 133 NE2 114.0 REMARK 620 3 HIS B 137 NE2 94.2 104.8 REMARK 620 4 BB2 B 202 O2 154.0 91.5 83.1 REMARK 620 5 BB2 B 202 O4 101.7 99.8 142.0 67.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 91 SG REMARK 620 2 HIS C 133 NE2 114.6 REMARK 620 3 HIS C 137 NE2 97.3 102.7 REMARK 620 4 BB2 C 202 O2 155.7 89.0 81.8 REMARK 620 5 BB2 C 202 O4 99.4 103.0 139.8 68.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 91 SG REMARK 620 2 HIS D 133 NE2 114.2 REMARK 620 3 HIS D 137 NE2 98.8 102.9 REMARK 620 4 BB2 D 202 O4 101.8 100.0 139.3 REMARK 620 5 BB2 D 202 O2 154.7 90.4 80.2 66.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BB2 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BB2 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BB2 C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BB2 D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6CAZ RELATED DB: PDB REMARK 900 PEPTIDE DEFORMYLASE FROM LEGIONELLA PNEUMOPHILA, APO STRUCTURE REMARK 900 RELATED ID: LEPNA.00882.A RELATED DB: TARGETTRACK DBREF1 6CK7 A 1 170 UNP A0A128NM93_LEGPN DBREF2 6CK7 A A0A128NM93 1 170 DBREF1 6CK7 B 1 170 UNP A0A128NM93_LEGPN DBREF2 6CK7 B A0A128NM93 1 170 DBREF1 6CK7 C 1 170 UNP A0A128NM93_LEGPN DBREF2 6CK7 C A0A128NM93 1 170 DBREF1 6CK7 D 1 170 UNP A0A128NM93_LEGPN DBREF2 6CK7 D A0A128NM93 1 170 SEQADV 6CK7 MET A -7 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 ALA A -6 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 HIS A -5 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 HIS A -4 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 HIS A -3 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 HIS A -2 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 HIS A -1 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 HIS A 0 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 MET B -7 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 ALA B -6 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 HIS B -5 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 HIS B -4 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 HIS B -3 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 HIS B -2 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 HIS B -1 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 HIS B 0 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 MET C -7 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 ALA C -6 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 HIS C -5 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 HIS C -4 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 HIS C -3 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 HIS C -2 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 HIS C -1 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 HIS C 0 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 MET D -7 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 ALA D -6 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 HIS D -5 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 HIS D -4 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 HIS D -3 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 HIS D -2 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 HIS D -1 UNP A0A128NM9 EXPRESSION TAG SEQADV 6CK7 HIS D 0 UNP A0A128NM9 EXPRESSION TAG SEQRES 1 A 178 MET ALA HIS HIS HIS HIS HIS HIS MET ALA ILE ARG LYS SEQRES 2 A 178 ILE LEU TYR LEU PRO ASP GLU ARG LEU ARG LYS ILE ALA SEQRES 3 A 178 LYS PRO VAL GLU THR PHE ASP GLU SER LEU GLN THR LEU SEQRES 4 A 178 ILE ASN ASP MET PHE ASP THR MET TYR ASP ALA ARG GLY SEQRES 5 A 178 VAL GLY LEU ALA ALA PRO GLN ILE GLY VAL SER LEU ARG SEQRES 6 A 178 LEU SER VAL ILE ASP ILE VAL GLY ASP LYS LYS GLU GLN SEQRES 7 A 178 ILE VAL ILE VAL ASN PRO GLU ILE VAL SER SER HIS GLY SEQRES 8 A 178 GLU LYS GLU PHE GLU GLU GLY CYS LEU SER VAL PRO GLY SEQRES 9 A 178 ALA TYR ASP THR VAL VAL ARG ALA GLU LYS VAL THR VAL SEQRES 10 A 178 LYS ALA LEU ASP ARG PHE GLY LYS PRO PHE GLU ILE THR SEQRES 11 A 178 GLY GLU GLY LEU LEU ALA GLU CYS LEU GLN HIS GLU ILE SEQRES 12 A 178 ASP HIS MET ASN GLY LYS LEU PHE VAL ASP MET LEU SER SEQRES 13 A 178 PRO LEU LYS ARG MET MET ALA ARG ARG LYS LEU ASP LYS SEQRES 14 A 178 PHE LYS ARG LEU GLN ALA ARG LYS PRO SEQRES 1 B 178 MET ALA HIS HIS HIS HIS HIS HIS MET ALA ILE ARG LYS SEQRES 2 B 178 ILE LEU TYR LEU PRO ASP GLU ARG LEU ARG LYS ILE ALA SEQRES 3 B 178 LYS PRO VAL GLU THR PHE ASP GLU SER LEU GLN THR LEU SEQRES 4 B 178 ILE ASN ASP MET PHE ASP THR MET TYR ASP ALA ARG GLY SEQRES 5 B 178 VAL GLY LEU ALA ALA PRO GLN ILE GLY VAL SER LEU ARG SEQRES 6 B 178 LEU SER VAL ILE ASP ILE VAL GLY ASP LYS LYS GLU GLN SEQRES 7 B 178 ILE VAL ILE VAL ASN PRO GLU ILE VAL SER SER HIS GLY SEQRES 8 B 178 GLU LYS GLU PHE GLU GLU GLY CYS LEU SER VAL PRO GLY SEQRES 9 B 178 ALA TYR ASP THR VAL VAL ARG ALA GLU LYS VAL THR VAL SEQRES 10 B 178 LYS ALA LEU ASP ARG PHE GLY LYS PRO PHE GLU ILE THR SEQRES 11 B 178 GLY GLU GLY LEU LEU ALA GLU CYS LEU GLN HIS GLU ILE SEQRES 12 B 178 ASP HIS MET ASN GLY LYS LEU PHE VAL ASP MET LEU SER SEQRES 13 B 178 PRO LEU LYS ARG MET MET ALA ARG ARG LYS LEU ASP LYS SEQRES 14 B 178 PHE LYS ARG LEU GLN ALA ARG LYS PRO SEQRES 1 C 178 MET ALA HIS HIS HIS HIS HIS HIS MET ALA ILE ARG LYS SEQRES 2 C 178 ILE LEU TYR LEU PRO ASP GLU ARG LEU ARG LYS ILE ALA SEQRES 3 C 178 LYS PRO VAL GLU THR PHE ASP GLU SER LEU GLN THR LEU SEQRES 4 C 178 ILE ASN ASP MET PHE ASP THR MET TYR ASP ALA ARG GLY SEQRES 5 C 178 VAL GLY LEU ALA ALA PRO GLN ILE GLY VAL SER LEU ARG SEQRES 6 C 178 LEU SER VAL ILE ASP ILE VAL GLY ASP LYS LYS GLU GLN SEQRES 7 C 178 ILE VAL ILE VAL ASN PRO GLU ILE VAL SER SER HIS GLY SEQRES 8 C 178 GLU LYS GLU PHE GLU GLU GLY CYS LEU SER VAL PRO GLY SEQRES 9 C 178 ALA TYR ASP THR VAL VAL ARG ALA GLU LYS VAL THR VAL SEQRES 10 C 178 LYS ALA LEU ASP ARG PHE GLY LYS PRO PHE GLU ILE THR SEQRES 11 C 178 GLY GLU GLY LEU LEU ALA GLU CYS LEU GLN HIS GLU ILE SEQRES 12 C 178 ASP HIS MET ASN GLY LYS LEU PHE VAL ASP MET LEU SER SEQRES 13 C 178 PRO LEU LYS ARG MET MET ALA ARG ARG LYS LEU ASP LYS SEQRES 14 C 178 PHE LYS ARG LEU GLN ALA ARG LYS PRO SEQRES 1 D 178 MET ALA HIS HIS HIS HIS HIS HIS MET ALA ILE ARG LYS SEQRES 2 D 178 ILE LEU TYR LEU PRO ASP GLU ARG LEU ARG LYS ILE ALA SEQRES 3 D 178 LYS PRO VAL GLU THR PHE ASP GLU SER LEU GLN THR LEU SEQRES 4 D 178 ILE ASN ASP MET PHE ASP THR MET TYR ASP ALA ARG GLY SEQRES 5 D 178 VAL GLY LEU ALA ALA PRO GLN ILE GLY VAL SER LEU ARG SEQRES 6 D 178 LEU SER VAL ILE ASP ILE VAL GLY ASP LYS LYS GLU GLN SEQRES 7 D 178 ILE VAL ILE VAL ASN PRO GLU ILE VAL SER SER HIS GLY SEQRES 8 D 178 GLU LYS GLU PHE GLU GLU GLY CYS LEU SER VAL PRO GLY SEQRES 9 D 178 ALA TYR ASP THR VAL VAL ARG ALA GLU LYS VAL THR VAL SEQRES 10 D 178 LYS ALA LEU ASP ARG PHE GLY LYS PRO PHE GLU ILE THR SEQRES 11 D 178 GLY GLU GLY LEU LEU ALA GLU CYS LEU GLN HIS GLU ILE SEQRES 12 D 178 ASP HIS MET ASN GLY LYS LEU PHE VAL ASP MET LEU SER SEQRES 13 D 178 PRO LEU LYS ARG MET MET ALA ARG ARG LYS LEU ASP LYS SEQRES 14 D 178 PHE LYS ARG LEU GLN ALA ARG LYS PRO HET ZN A 201 1 HET BB2 A 202 27 HET SO4 A 203 5 HET ZN B 201 1 HET BB2 B 202 27 HET SO4 B 203 5 HET ZN C 201 1 HET BB2 C 202 27 HET SO4 C 203 5 HET SO4 C 204 5 HET ZN D 201 1 HET BB2 D 202 27 HET SO4 D 203 5 HETNAM ZN ZINC ION HETNAM BB2 ACTINONIN HETNAM SO4 SULFATE ION HETSYN BB2 2-[(FORMYL-HYDROXY-AMINO)-METHYL]-HEPTANOIC ACID [1-(2- HETSYN 2 BB2 HYDROXYMETHYL-PYRROLIDINE-1-CARBONYL)-2-METHYL- HETSYN 3 BB2 PROPYL]-AMIDE FORMUL 5 ZN 4(ZN 2+) FORMUL 6 BB2 4(C19 H35 N3 O5) FORMUL 7 SO4 5(O4 S 2-) FORMUL 18 HOH *634(H2 O) HELIX 1 AA1 ASP A 11 LYS A 16 5 6 HELIX 2 AA2 ASP A 25 ALA A 42 1 18 HELIX 3 AA3 PRO A 50 GLY A 53 5 4 HELIX 4 AA4 ASP A 66 GLN A 70 5 5 HELIX 5 AA5 GLY A 125 ASN A 139 1 15 HELIX 6 AA6 LEU A 142 LEU A 147 5 6 HELIX 7 AA7 SER A 148 ALA A 167 1 20 HELIX 8 AA8 ASP B 11 LYS B 16 5 6 HELIX 9 AA9 ASP B 25 ALA B 42 1 18 HELIX 10 AB1 PRO B 50 GLY B 53 5 4 HELIX 11 AB2 ASP B 66 GLN B 70 5 5 HELIX 12 AB3 GLY B 125 ASN B 139 1 15 HELIX 13 AB4 LEU B 142 LEU B 147 5 6 HELIX 14 AB5 SER B 148 LYS B 169 1 22 HELIX 15 AB6 ASP C 11 LYS C 16 5 6 HELIX 16 AB7 ASP C 25 ALA C 42 1 18 HELIX 17 AB8 PRO C 50 GLY C 53 5 4 HELIX 18 AB9 ASP C 66 GLN C 70 5 5 HELIX 19 AC1 GLY C 125 ASN C 139 1 15 HELIX 20 AC2 LEU C 142 LEU C 147 5 6 HELIX 21 AC3 SER C 148 ALA C 167 1 20 HELIX 22 AC4 ASP D 11 LYS D 16 5 6 HELIX 23 AC5 ASP D 25 ALA D 42 1 18 HELIX 24 AC6 PRO D 50 GLY D 53 5 4 HELIX 25 AC7 ASP D 66 GLN D 70 5 5 HELIX 26 AC8 GLY D 125 ASN D 139 1 15 HELIX 27 AC9 LEU D 142 LEU D 147 5 6 HELIX 28 AD1 SER D 148 ALA D 167 1 20 SHEET 1 AA1 5 GLY A 46 ALA A 48 0 SHEET 2 AA1 5 LEU A 58 ILE A 61 -1 O VAL A 60 N LEU A 47 SHEET 3 AA1 5 ILE A 71 HIS A 82 -1 O ILE A 71 N ILE A 61 SHEET 4 AA1 5 LYS A 106 LEU A 112 -1 O LYS A 110 N GLU A 77 SHEET 5 AA1 5 PRO A 118 GLU A 124 -1 O ILE A 121 N VAL A 109 SHEET 1 AA2 2 LYS A 85 GLU A 89 0 SHEET 2 AA2 2 ASP A 99 ARG A 103 -1 O VAL A 101 N PHE A 87 SHEET 1 AA3 5 GLY B 46 ALA B 48 0 SHEET 2 AA3 5 LEU B 58 ILE B 61 -1 O VAL B 60 N LEU B 47 SHEET 3 AA3 5 ILE B 71 HIS B 82 -1 O ILE B 71 N ILE B 61 SHEET 4 AA3 5 LYS B 106 LEU B 112 -1 O LEU B 112 N VAL B 74 SHEET 5 AA3 5 PRO B 118 GLU B 124 -1 O ILE B 121 N VAL B 109 SHEET 1 AA4 2 LYS B 85 GLU B 89 0 SHEET 2 AA4 2 ASP B 99 ARG B 103 -1 O ARG B 103 N LYS B 85 SHEET 1 AA5 5 GLY C 46 ALA C 48 0 SHEET 2 AA5 5 LEU C 58 ILE C 61 -1 O VAL C 60 N LEU C 47 SHEET 3 AA5 5 ILE C 71 HIS C 82 -1 O ILE C 71 N ILE C 61 SHEET 4 AA5 5 LYS C 106 LEU C 112 -1 O LYS C 110 N GLU C 77 SHEET 5 AA5 5 PRO C 118 GLU C 124 -1 O ILE C 121 N VAL C 109 SHEET 1 AA6 2 LYS C 85 GLU C 89 0 SHEET 2 AA6 2 ASP C 99 ARG C 103 -1 O VAL C 101 N PHE C 87 SHEET 1 AA7 5 GLY D 46 ALA D 48 0 SHEET 2 AA7 5 LEU D 58 ILE D 61 -1 O VAL D 60 N LEU D 47 SHEET 3 AA7 5 ILE D 71 HIS D 82 -1 O ILE D 71 N ILE D 61 SHEET 4 AA7 5 LYS D 106 LEU D 112 -1 O LEU D 112 N VAL D 74 SHEET 5 AA7 5 PRO D 118 GLU D 124 -1 O ILE D 121 N VAL D 109 SHEET 1 AA8 2 LYS D 85 GLU D 89 0 SHEET 2 AA8 2 ASP D 99 ARG D 103 -1 O VAL D 101 N PHE D 87 LINK SG CYS A 91 ZN ZN A 201 1555 1555 2.32 LINK NE2 HIS A 133 ZN ZN A 201 1555 1555 2.02 LINK NE2 HIS A 137 ZN ZN A 201 1555 1555 2.09 LINK ZN ZN A 201 O4 BB2 A 202 1555 1555 2.11 LINK ZN ZN A 201 O2 BB2 A 202 1555 1555 2.13 LINK SG CYS B 91 ZN ZN B 201 1555 1555 2.36 LINK NE2 HIS B 133 ZN ZN B 201 1555 1555 2.02 LINK NE2 HIS B 137 ZN ZN B 201 1555 1555 2.14 LINK ZN ZN B 201 O2 BB2 B 202 1555 1555 2.30 LINK ZN ZN B 201 O4 BB2 B 202 1555 1555 2.11 LINK SG CYS C 91 ZN ZN C 201 1555 1555 2.34 LINK NE2 HIS C 133 ZN ZN C 201 1555 1555 1.99 LINK NE2 HIS C 137 ZN ZN C 201 1555 1555 2.09 LINK ZN ZN C 201 O2 BB2 C 202 1555 1555 2.29 LINK ZN ZN C 201 O4 BB2 C 202 1555 1555 2.07 LINK SG CYS D 91 ZN ZN D 201 1555 1555 2.34 LINK NE2 HIS D 133 ZN ZN D 201 1555 1555 2.04 LINK NE2 HIS D 137 ZN ZN D 201 1555 1555 2.09 LINK ZN ZN D 201 O4 BB2 D 202 1555 1555 2.13 LINK ZN ZN D 201 O2 BB2 D 202 1555 1555 2.42 CISPEP 1 LEU A 9 PRO A 10 0 5.73 CISPEP 2 LEU B 9 PRO B 10 0 4.77 CISPEP 3 LEU C 9 PRO C 10 0 5.19 CISPEP 4 LEU D 9 PRO D 10 0 6.87 SITE 1 AC1 5 GLN A 51 CYS A 91 HIS A 133 HIS A 137 SITE 2 AC1 5 BB2 A 202 SITE 1 AC2 16 GLY A 44 VAL A 45 GLY A 46 GLN A 51 SITE 2 AC2 16 GLU A 88 GLY A 90 CYS A 91 LEU A 92 SITE 3 AC2 16 GLU A 129 CYS A 130 HIS A 133 GLU A 134 SITE 4 AC2 16 HIS A 137 ZN A 201 TYR B 98 BB2 B 202 SITE 1 AC3 2 ARG A 164 ARG A 168 SITE 1 AC4 5 GLN B 51 CYS B 91 HIS B 133 HIS B 137 SITE 2 AC4 5 BB2 B 202 SITE 1 AC5 16 BB2 A 202 GLY B 44 VAL B 45 GLY B 46 SITE 2 AC5 16 GLN B 51 GLU B 88 GLY B 90 CYS B 91 SITE 3 AC5 16 LEU B 92 LEU B 126 GLU B 129 CYS B 130 SITE 4 AC5 16 HIS B 133 GLU B 134 HIS B 137 ZN B 201 SITE 1 AC6 2 ARG B 164 ARG B 168 SITE 1 AC7 5 GLN C 51 CYS C 91 HIS C 133 HIS C 137 SITE 2 AC7 5 BB2 C 202 SITE 1 AC8 17 GLY C 44 VAL C 45 GLY C 46 GLN C 51 SITE 2 AC8 17 GLU C 88 GLY C 90 CYS C 91 LEU C 92 SITE 3 AC8 17 GLU C 129 CYS C 130 HIS C 133 GLU C 134 SITE 4 AC8 17 HIS C 137 ZN C 201 GLU D 88 TYR D 98 SITE 5 AC8 17 BB2 D 202 SITE 1 AC9 4 LYS C 161 ARG C 164 ARG C 168 HOH C 321 SITE 1 AD1 4 LEU C 9 PRO C 10 ARG C 15 HOH C 311 SITE 1 AD2 5 GLN D 51 CYS D 91 HIS D 133 HIS D 137 SITE 2 AD2 5 BB2 D 202 SITE 1 AD3 16 GLU C 88 BB2 C 202 GLY D 44 VAL D 45 SITE 2 AD3 16 GLY D 46 GLN D 51 GLU D 88 GLY D 90 SITE 3 AD3 16 CYS D 91 LEU D 92 GLU D 129 CYS D 130 SITE 4 AD3 16 HIS D 133 GLU D 134 HIS D 137 ZN D 201 SITE 1 AD4 2 ARG D 164 ARG D 168 CRYST1 44.650 132.060 90.380 90.00 103.64 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022396 0.000000 0.005434 0.00000 SCALE2 0.000000 0.007572 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011385 0.00000