HEADER HYDROLASE/HYDROLASE INHIBITOR 01-MAR-18 6CKZ TITLE HUMAN CASPASE-3 IN COMPLEX WITH AC-DW3-KE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASPASE-3 SUBUNIT P17; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CASP-3; COMPND 5 EC: 3.4.22.56; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CASPASE-3 SUBUNIT P12; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: CASP-3; COMPND 11 EC: 3.4.22.56; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: ACE-1MH-ASP-B3L-PHE-1U8; COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CASP3, CPP32; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CASP3, CPP32; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS CASPASE-3, INHIBITOR, APOPTOSIS, HYDROLASE, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.T.SOLANIA,G.E.GONZALEZ-PAEZ,D.W.WOLAN REVDAT 7 15-NOV-23 6CKZ 1 LINK ATOM REVDAT 6 04-OCT-23 6CKZ 1 REMARK REVDAT 5 30-SEP-20 6CKZ 1 HEADER KEYWDS DBREF SHEET REVDAT 5 2 1 LINK ATOM REVDAT 4 23-SEP-20 6CKZ 1 JRNL REVDAT 3 18-DEC-19 6CKZ 1 REMARK REVDAT 2 06-NOV-19 6CKZ 1 REMARK REVDAT 1 06-MAR-19 6CKZ 0 JRNL AUTH A.SOLANIA,G.E.GONZALEZ-PAEZ,D.W.WOLAN JRNL TITL SELECTIVE AND RAPID CELL-PERMEABLE INHIBITOR OF HUMAN JRNL TITL 2 CASPASE-3. JRNL REF ACS CHEM.BIOL. V. 14 2463 2019 JRNL REFN ESSN 1554-8937 JRNL PMID 31334631 JRNL DOI 10.1021/ACSCHEMBIO.9B00564 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2747: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 41762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.9624 - 3.6987 0.97 2826 164 0.1485 0.1663 REMARK 3 2 3.6987 - 2.9360 0.99 2786 144 0.1486 0.1587 REMARK 3 3 2.9360 - 2.5649 0.97 2698 157 0.1594 0.1621 REMARK 3 4 2.5649 - 2.3304 0.99 2723 153 0.1519 0.1716 REMARK 3 5 2.3304 - 2.1634 0.98 2716 133 0.1437 0.1721 REMARK 3 6 2.1634 - 2.0359 0.97 2689 125 0.1475 0.1790 REMARK 3 7 2.0359 - 1.9339 0.99 2699 161 0.1428 0.1869 REMARK 3 8 1.9339 - 1.8497 0.99 2691 143 0.1569 0.1869 REMARK 3 9 1.8497 - 1.7785 0.96 2644 138 0.1491 0.1377 REMARK 3 10 1.7785 - 1.7171 0.98 2673 128 0.1555 0.1642 REMARK 3 11 1.7171 - 1.6634 0.99 2730 152 0.1630 0.1937 REMARK 3 12 1.6634 - 1.6159 0.98 2675 127 0.1690 0.1897 REMARK 3 13 1.6159 - 1.5733 0.97 2662 131 0.1746 0.2090 REMARK 3 14 1.5733 - 1.5350 0.88 2375 131 0.1948 0.2168 REMARK 3 15 1.5350 - 1.5001 0.76 2074 114 0.2122 0.2548 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2056 REMARK 3 ANGLE : 1.985 2771 REMARK 3 CHIRALITY : 0.063 302 REMARK 3 PLANARITY : 0.005 354 REMARK 3 DIHEDRAL : 4.184 1682 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 29:51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8336 31.3056 51.4785 REMARK 3 T TENSOR REMARK 3 T11: 0.1365 T22: 0.1734 REMARK 3 T33: 0.1906 T12: 0.0063 REMARK 3 T13: 0.0136 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 0.9097 L22: 3.1350 REMARK 3 L33: 2.1108 L12: 0.1424 REMARK 3 L13: -0.2501 L23: -1.3961 REMARK 3 S TENSOR REMARK 3 S11: 0.0521 S12: 0.0996 S13: 0.0804 REMARK 3 S21: -0.0709 S22: 0.1674 S23: 0.3258 REMARK 3 S31: -0.1192 S32: -0.2362 S33: -0.2206 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 52:92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3754 16.6935 69.1338 REMARK 3 T TENSOR REMARK 3 T11: 0.2135 T22: 0.1751 REMARK 3 T33: 0.1380 T12: -0.0273 REMARK 3 T13: 0.0201 T23: 0.0289 REMARK 3 L TENSOR REMARK 3 L11: 1.5037 L22: 2.2774 REMARK 3 L33: 1.3250 L12: -0.2249 REMARK 3 L13: 0.2086 L23: -0.4448 REMARK 3 S TENSOR REMARK 3 S11: 0.0817 S12: -0.1572 S13: -0.1377 REMARK 3 S21: 0.2049 S22: 0.0534 S23: 0.1449 REMARK 3 S31: 0.0964 S32: -0.0752 S33: -0.1411 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 93:105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1893 9.5832 59.2743 REMARK 3 T TENSOR REMARK 3 T11: 0.2539 T22: 0.2155 REMARK 3 T33: 0.2804 T12: -0.0745 REMARK 3 T13: -0.0137 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 5.6376 L22: 5.1577 REMARK 3 L33: 6.2295 L12: -4.7880 REMARK 3 L13: 3.8408 L23: -5.2454 REMARK 3 S TENSOR REMARK 3 S11: 0.3107 S12: 0.0397 S13: -0.3377 REMARK 3 S21: -0.2514 S22: -0.0178 S23: 0.6171 REMARK 3 S31: 0.3297 S32: -0.2034 S33: -0.2728 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 106:154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5488 14.4926 54.5803 REMARK 3 T TENSOR REMARK 3 T11: 0.1581 T22: 0.1541 REMARK 3 T33: 0.1963 T12: -0.0273 REMARK 3 T13: -0.0022 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 1.0854 L22: 1.5134 REMARK 3 L33: 1.6008 L12: -0.2628 REMARK 3 L13: 0.1247 L23: -0.3853 REMARK 3 S TENSOR REMARK 3 S11: 0.0571 S12: 0.0703 S13: -0.1588 REMARK 3 S21: -0.0388 S22: 0.0152 S23: 0.1943 REMARK 3 S31: 0.1846 S32: -0.1499 S33: -0.0751 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 155:174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.5415 15.7152 52.5333 REMARK 3 T TENSOR REMARK 3 T11: 0.1396 T22: 0.0865 REMARK 3 T33: 0.1207 T12: -0.0067 REMARK 3 T13: -0.0124 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 3.8468 L22: 1.2550 REMARK 3 L33: 1.8091 L12: -0.9578 REMARK 3 L13: 1.4595 L23: -0.2807 REMARK 3 S TENSOR REMARK 3 S11: 0.0952 S12: 0.1346 S13: -0.0584 REMARK 3 S21: 0.0468 S22: -0.0120 S23: -0.0540 REMARK 3 S31: 0.1123 S32: 0.1435 S33: -0.0998 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 201:213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.3044 15.6192 60.3063 REMARK 3 T TENSOR REMARK 3 T11: 0.1696 T22: 0.1614 REMARK 3 T33: 0.1593 T12: -0.0183 REMARK 3 T13: -0.0208 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 2.0306 L22: 1.3947 REMARK 3 L33: 0.8884 L12: -0.3850 REMARK 3 L13: -0.0188 L23: -0.3024 REMARK 3 S TENSOR REMARK 3 S11: 0.1202 S12: -0.1577 S13: -0.1334 REMARK 3 S21: 0.1273 S22: -0.0362 S23: -0.0353 REMARK 3 S31: 0.1147 S32: 0.0813 S33: -0.0613 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 214:246 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.3570 28.8406 59.7036 REMARK 3 T TENSOR REMARK 3 T11: 0.1764 T22: 0.1557 REMARK 3 T33: 0.1399 T12: -0.0239 REMARK 3 T13: 0.0033 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 2.2666 L22: 1.6836 REMARK 3 L33: 1.9442 L12: -0.6828 REMARK 3 L13: 0.3006 L23: -0.9367 REMARK 3 S TENSOR REMARK 3 S11: 0.0833 S12: -0.0165 S13: 0.0864 REMARK 3 S21: 0.1170 S22: -0.0380 S23: -0.0162 REMARK 3 S31: -0.1720 S32: 0.0690 S33: -0.0333 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN A AND RESID 247:278 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.3323 21.0684 58.3273 REMARK 3 T TENSOR REMARK 3 T11: 0.1574 T22: 0.1530 REMARK 3 T33: 0.1495 T12: -0.0113 REMARK 3 T13: -0.0065 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 1.1743 L22: 0.9878 REMARK 3 L33: 1.3136 L12: -0.6381 REMARK 3 L13: 1.0093 L23: -0.8959 REMARK 3 S TENSOR REMARK 3 S11: 0.0722 S12: -0.0129 S13: -0.0598 REMARK 3 S21: 0.0951 S22: 0.0067 S23: 0.0235 REMARK 3 S31: -0.0052 S32: 0.0055 S33: -0.0858 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CKZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000232916. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41773 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 28.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.35100 REMARK 200 R SYM FOR SHELL (I) : 0.45200 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4JJE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1:1 DILUTION WITH 0.10 M SODIUM REMARK 280 CITRATE, PH 5.4, 15.2 % PEG6000, 0.010 M DTT, 0.02% NAN3., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.54750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.94600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.93150 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.54750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.94600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.93150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.54750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.94600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.93150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.54750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.94600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 47.93150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE (ACE)(1MH)D(B3L)F(1U8) IS PEPTIDE-LIKE, A MEMBER OF CASPASE REMARK 400 INHIBITOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: (ACE)(1MH)D(B3L)F(1U8) REMARK 400 CHAIN: C REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASN A 3 REMARK 465 THR A 4 REMARK 465 GLU A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 VAL A 8 REMARK 465 ASP A 9 REMARK 465 SER A 10 REMARK 465 LYS A 11 REMARK 465 SER A 12 REMARK 465 ILE A 13 REMARK 465 LYS A 14 REMARK 465 ASN A 15 REMARK 465 LEU A 16 REMARK 465 GLU A 17 REMARK 465 PRO A 18 REMARK 465 LYS A 19 REMARK 465 ILE A 20 REMARK 465 ILE A 21 REMARK 465 HIS A 22 REMARK 465 GLY A 23 REMARK 465 SER A 24 REMARK 465 GLU A 25 REMARK 465 SER A 26 REMARK 465 MET A 27 REMARK 465 ASP A 28 REMARK 465 ASP A 175 REMARK 465 SER B 176 REMARK 465 GLY B 177 REMARK 465 VAL B 178 REMARK 465 ASP B 179 REMARK 465 ASP B 180 REMARK 465 ASP B 181 REMARK 465 MET B 182 REMARK 465 ALA B 183 REMARK 465 CYS B 184 REMARK 465 HIS B 280 REMARK 465 HIS B 281 REMARK 465 HIS B 282 REMARK 465 HIS B 283 REMARK 465 HIS B 284 REMARK 465 HIS B 285 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 GLU A 173 CG CD OE1 OE2 REMARK 470 LYS B 210 CG CD CE NZ REMARK 470 LYS B 224 CG CD CE NZ REMARK 470 LEU B 278 CG CD1 CD2 REMARK 470 GLU B 279 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1MH C 2 C - N - CA ANGL. DEV. = 17.2 DEGREES REMARK 500 ASP C 3 O - C - N ANGL. DEV. = -10.0 DEGREES REMARK 500 B3L C 4 O - C - N ANGL. DEV. = 21.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 144 150.45 -49.39 REMARK 500 LYS B 229 -5.06 -152.14 REMARK 500 REMARK 500 REMARK: NULL DBREF 6CKZ A 1 175 UNP P42574 CASP3_HUMAN 1 175 DBREF 6CKZ B 176 277 UNP P42574 CASP3_HUMAN 176 277 DBREF 6CKZ C 1 6 PDB 6CKZ 6CKZ 1 6 SEQADV 6CKZ LEU B 278 UNP P42574 EXPRESSION TAG SEQADV 6CKZ GLU B 279 UNP P42574 EXPRESSION TAG SEQADV 6CKZ HIS B 280 UNP P42574 EXPRESSION TAG SEQADV 6CKZ HIS B 281 UNP P42574 EXPRESSION TAG SEQADV 6CKZ HIS B 282 UNP P42574 EXPRESSION TAG SEQADV 6CKZ HIS B 283 UNP P42574 EXPRESSION TAG SEQADV 6CKZ HIS B 284 UNP P42574 EXPRESSION TAG SEQADV 6CKZ HIS B 285 UNP P42574 EXPRESSION TAG SEQRES 1 A 175 MET GLU ASN THR GLU ASN SER VAL ASP SER LYS SER ILE SEQRES 2 A 175 LYS ASN LEU GLU PRO LYS ILE ILE HIS GLY SER GLU SER SEQRES 3 A 175 MET ASP SER GLY ILE SER LEU ASP ASN SER TYR LYS MET SEQRES 4 A 175 ASP TYR PRO GLU MET GLY LEU CYS ILE ILE ILE ASN ASN SEQRES 5 A 175 LYS ASN PHE HIS LYS SER THR GLY MET THR SER ARG SER SEQRES 6 A 175 GLY THR ASP VAL ASP ALA ALA ASN LEU ARG GLU THR PHE SEQRES 7 A 175 ARG ASN LEU LYS TYR GLU VAL ARG ASN LYS ASN ASP LEU SEQRES 8 A 175 THR ARG GLU GLU ILE VAL GLU LEU MET ARG ASP VAL SER SEQRES 9 A 175 LYS GLU ASP HIS SER LYS ARG SER SER PHE VAL CYS VAL SEQRES 10 A 175 LEU LEU SER HIS GLY GLU GLU GLY ILE ILE PHE GLY THR SEQRES 11 A 175 ASN GLY PRO VAL ASP LEU LYS LYS ILE THR ASN PHE PHE SEQRES 12 A 175 ARG GLY ASP ARG CYS ARG SER LEU THR GLY LYS PRO LYS SEQRES 13 A 175 LEU PHE ILE ILE GLN ALA CYS ARG GLY THR GLU LEU ASP SEQRES 14 A 175 CYS GLY ILE GLU THR ASP SEQRES 1 B 110 SER GLY VAL ASP ASP ASP MET ALA CYS HIS LYS ILE PRO SEQRES 2 B 110 VAL GLU ALA ASP PHE LEU TYR ALA TYR SER THR ALA PRO SEQRES 3 B 110 GLY TYR TYR SER TRP ARG ASN SER LYS ASP GLY SER TRP SEQRES 4 B 110 PHE ILE GLN SER LEU CYS ALA MET LEU LYS GLN TYR ALA SEQRES 5 B 110 ASP LYS LEU GLU PHE MET HIS ILE LEU THR ARG VAL ASN SEQRES 6 B 110 ARG LYS VAL ALA THR GLU PHE GLU SER PHE SER PHE ASP SEQRES 7 B 110 ALA THR PHE HIS ALA LYS LYS GLN ILE PRO CYS ILE VAL SEQRES 8 B 110 SER MET LEU THR LYS GLU LEU TYR PHE TYR HIS LEU GLU SEQRES 9 B 110 HIS HIS HIS HIS HIS HIS SEQRES 1 C 6 ACE 1MH ASP B3L PHE 1U8 HET ACE C 1 3 HET 1MH C 2 11 HET B3L C 4 9 HET 1U8 C 6 9 HETNAM ACE ACETYL GROUP HETNAM 1MH 3-PYRIDIN-3-YL-L-ALANINE HETNAM B3L (3S)-3-AMINO-5-METHYLHEXANOIC ACID HETNAM 1U8 (3S)-3-AMINO-5-[(2,6-DIMETHYLBENZOYL)OXY]-4- HETNAM 2 1U8 OXOPENTANOIC ACID HETSYN B3L (S)-BETA-3-HOMOLEUCINE FORMUL 3 ACE C2 H4 O FORMUL 3 1MH C8 H10 N2 O2 FORMUL 3 B3L C7 H15 N O2 FORMUL 3 1U8 C14 H17 N O5 FORMUL 4 HOH *206(H2 O) HELIX 1 AA1 HIS A 56 GLY A 60 5 5 HELIX 2 AA2 GLY A 66 LEU A 81 1 16 HELIX 3 AA3 THR A 92 LYS A 105 1 14 HELIX 4 AA4 LEU A 136 PHE A 142 1 7 HELIX 5 AA5 CYS A 148 THR A 152 5 5 HELIX 6 AA6 TRP B 214 ALA B 227 1 14 HELIX 7 AA7 GLU B 231 PHE B 247 1 17 HELIX 8 AA8 ASP B 253 HIS B 257 5 5 SHEET 1 AA1 6 GLU A 84 ASN A 89 0 SHEET 2 AA1 6 GLU A 43 ASN A 51 1 N ASN A 51 O LYS A 88 SHEET 3 AA1 6 ARG A 111 LEU A 119 1 O VAL A 117 N ILE A 48 SHEET 4 AA1 6 LYS A 156 GLN A 161 1 O LEU A 157 N PHE A 114 SHEET 5 AA1 6 PHE B 193 TYR B 197 1 O LEU B 194 N PHE A 158 SHEET 6 AA1 6 CYS B 264 SER B 267 -1 O VAL B 266 N TYR B 195 SHEET 1 AA2 3 GLY A 122 GLU A 123 0 SHEET 2 AA2 3 ILE A 126 GLY A 129 -1 O ILE A 126 N GLU A 123 SHEET 3 AA2 3 GLY A 132 ASP A 135 -1 O VAL A 134 N ILE A 127 SHEET 1 AA3 3 GLY B 212 SER B 213 0 SHEET 2 AA3 3 TRP B 206 ASN B 208 -1 N ASN B 208 O GLY B 212 SHEET 3 AA3 3 ASP C 3 PHE C 5 -1 O B3L C 4 N ARG B 207 LINK SG CYS A 163 C9 1U8 C 6 1555 1555 1.87 LINK C ACE C 1 N 1MH C 2 1555 1555 1.33 LINK C 1MH C 2 N ASP C 3 1555 1555 1.33 LINK C ASP C 3 N B3L C 4 1555 1555 1.23 LINK C B3L C 4 N PHE C 5 1555 1555 1.29 LINK C PHE C 5 N 1U8 C 6 1555 1555 1.33 CRYST1 67.095 83.892 95.863 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014904 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011920 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010432 0.00000