HEADER TRANSFERASE, LYASE/DNA 02-MAR-18 6CLY TITLE STRUCTURE OF HUMAN DNA POLYMERASE BETA COMPLEXED WITH 8-CLG AS THE TITLE 2 TEMPLATE BASE IN A 1-NUCLEOTIDE GAPPED DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE BETA; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.7,4.2.99.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*CP*CP*GP*AP*CP*(CGM) COMPND 8 P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'); COMPND 9 CHAIN: T; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'); COMPND 13 CHAIN: P; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA (5'-D(P*GP*TP*CP*GP*G)-3'); COMPND 17 CHAIN: D; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 MOL_ID: 4; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_TAXID: 9606 KEYWDS DNA BINDING PROTEIN, TRANSFERASE, LYASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.-C.KOAG,S.LEE REVDAT 2 13-MAR-24 6CLY 1 LINK REVDAT 1 06-MAR-19 6CLY 0 JRNL AUTH M.-C.KOAG,S.LEE JRNL TITL STRUCTURE OF HUMAN DNA POLYMERASE BETA COMPLEXED WITH 8-CLG JRNL TITL 2 AS THE TEMPLATE BASE IN A 1-NUCLEOTIDE GAPPED DNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 22561 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1154 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9178 - 4.3583 1.00 2854 146 0.1590 0.1751 REMARK 3 2 4.3583 - 3.4652 0.99 2755 167 0.1916 0.2275 REMARK 3 3 3.4652 - 3.0289 0.99 2767 158 0.2410 0.3095 REMARK 3 4 3.0289 - 2.7528 0.97 2732 126 0.2663 0.3591 REMARK 3 5 2.7528 - 2.5559 0.97 2732 143 0.2537 0.3310 REMARK 3 6 2.5559 - 2.4055 0.95 2621 145 0.2688 0.3369 REMARK 3 7 2.4055 - 2.2852 0.89 2494 141 0.2588 0.3469 REMARK 3 8 2.2852 - 2.1858 0.88 2452 128 0.2902 0.3437 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3350 REMARK 3 ANGLE : 0.886 4643 REMARK 3 CHIRALITY : 0.031 511 REMARK 3 PLANARITY : 0.004 490 REMARK 3 DIHEDRAL : 20.103 1312 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CLY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000232827. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97648 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23552 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% TO 23% PEG3400, AND 350 MM SODIUM REMARK 280 ACETATE IN 50 MM IMIDAZOLE (PH 7.5), VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.83400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 LYS A 5 REMARK 465 ALA A 6 REMARK 465 THR A 205 REMARK 465 LYS A 206 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 8 CG CD OE1 NE2 REMARK 470 GLU A 9 CG CD OE1 OE2 REMARK 470 GLU A 203 CG CD OE1 OE2 REMARK 470 GLN A 207 CG CD OE1 NE2 REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 ASN A 245 CG OD1 ND2 REMARK 470 ASP A 246 CG OD1 OD2 REMARK 470 GLU A 247 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS A 285 NE1 TRP A 325 1.89 REMARK 500 CE1 HIS A 285 NE1 TRP A 325 1.98 REMARK 500 O HIS A 285 CG GLU A 288 2.15 REMARK 500 NZ LYS A 289 OE1 GLN A 324 2.17 REMARK 500 O VAL A 29 NH2 ARG A 112 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG D 1 P DG D 1 OP3 -0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 208 C - N - CD ANGL. DEV. = -18.5 DEGREES REMARK 500 HIS A 285 N - CA - C ANGL. DEV. = 19.3 DEGREES REMARK 500 ALA A 286 N - CA - C ANGL. DEV. = -19.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 11 -72.58 -57.39 REMARK 500 PRO A 50 32.36 -84.02 REMARK 500 CYS A 178 -145.52 -103.66 REMARK 500 GLU A 203 30.10 -83.22 REMARK 500 LYS A 244 76.95 -68.95 REMARK 500 ASN A 245 -119.92 56.06 REMARK 500 ALA A 286 -91.79 107.49 REMARK 500 ASN A 294 -168.91 -116.84 REMARK 500 ASP A 332 56.34 -96.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 60 O REMARK 620 2 LEU A 62 O 82.4 REMARK 620 3 VAL A 65 O 84.1 93.9 REMARK 620 4 HOH A 564 O 92.5 84.6 176.4 REMARK 620 5 DC D 3 OP1 170.1 100.1 86.2 97.2 REMARK 620 6 HOH D 107 O 92.3 174.1 82.9 98.4 84.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 101 O REMARK 620 2 VAL A 103 O 97.9 REMARK 620 3 ILE A 106 O 91.4 87.8 REMARK 620 4 DG P 9 OP1 162.3 98.6 95.4 REMARK 620 5 HOH P 111 O 86.6 98.7 173.4 84.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 402 DBREF 6CLY A 1 335 UNP P06746 DPOLB_HUMAN 1 335 DBREF 6CLY T 1 16 PDB 6CLY 6CLY 1 16 DBREF 6CLY P 1 10 PDB 6CLY 6CLY 1 10 DBREF 6CLY D 1 5 PDB 6CLY 6CLY 1 5 SEQRES 1 A 335 MET SER LYS ARG LYS ALA PRO GLN GLU THR LEU ASN GLY SEQRES 2 A 335 GLY ILE THR ASP MET LEU THR GLU LEU ALA ASN PHE GLU SEQRES 3 A 335 LYS ASN VAL SER GLN ALA ILE HIS LYS TYR ASN ALA TYR SEQRES 4 A 335 ARG LYS ALA ALA SER VAL ILE ALA LYS TYR PRO HIS LYS SEQRES 5 A 335 ILE LYS SER GLY ALA GLU ALA LYS LYS LEU PRO GLY VAL SEQRES 6 A 335 GLY THR LYS ILE ALA GLU LYS ILE ASP GLU PHE LEU ALA SEQRES 7 A 335 THR GLY LYS LEU ARG LYS LEU GLU LYS ILE ARG GLN ASP SEQRES 8 A 335 ASP THR SER SER SER ILE ASN PHE LEU THR ARG VAL SER SEQRES 9 A 335 GLY ILE GLY PRO SER ALA ALA ARG LYS PHE VAL ASP GLU SEQRES 10 A 335 GLY ILE LYS THR LEU GLU ASP LEU ARG LYS ASN GLU ASP SEQRES 11 A 335 LYS LEU ASN HIS HIS GLN ARG ILE GLY LEU LYS TYR PHE SEQRES 12 A 335 GLY ASP PHE GLU LYS ARG ILE PRO ARG GLU GLU MET LEU SEQRES 13 A 335 GLN MET GLN ASP ILE VAL LEU ASN GLU VAL LYS LYS VAL SEQRES 14 A 335 ASP SER GLU TYR ILE ALA THR VAL CYS GLY SER PHE ARG SEQRES 15 A 335 ARG GLY ALA GLU SER SER GLY ASP MET ASP VAL LEU LEU SEQRES 16 A 335 THR HIS PRO SER PHE THR SER GLU SER THR LYS GLN PRO SEQRES 17 A 335 LYS LEU LEU HIS GLN VAL VAL GLU GLN LEU GLN LYS VAL SEQRES 18 A 335 HIS PHE ILE THR ASP THR LEU SER LYS GLY GLU THR LYS SEQRES 19 A 335 PHE MET GLY VAL CYS GLN LEU PRO SER LYS ASN ASP GLU SEQRES 20 A 335 LYS GLU TYR PRO HIS ARG ARG ILE ASP ILE ARG LEU ILE SEQRES 21 A 335 PRO LYS ASP GLN TYR TYR CYS GLY VAL LEU TYR PHE THR SEQRES 22 A 335 GLY SER ASP ILE PHE ASN LYS ASN MET ARG ALA HIS ALA SEQRES 23 A 335 LEU GLU LYS GLY PHE THR ILE ASN GLU TYR THR ILE ARG SEQRES 24 A 335 PRO LEU GLY VAL THR GLY VAL ALA GLY GLU PRO LEU PRO SEQRES 25 A 335 VAL ASP SER GLU LYS ASP ILE PHE ASP TYR ILE GLN TRP SEQRES 26 A 335 LYS TYR ARG GLU PRO LYS ASP ARG SER GLU SEQRES 1 T 16 DC DC DG DA DC F74 DT DC DG DC DA DT DC SEQRES 2 T 16 DA DG DC SEQRES 1 P 10 DG DC DT DG DA DT DG DC DG DA SEQRES 1 D 5 DG DT DC DG DG HET F74 T 6 23 HET NA A 401 1 HET NA A 402 1 HETNAM F74 8-CHLORO-2'-DEOXYGUANOSINE 5'-(DIHYDROGEN PHOSPHATE) HETNAM NA SODIUM ION FORMUL 2 F74 C10 H13 CL N5 O7 P FORMUL 5 NA 2(NA 1+) FORMUL 7 HOH *126(H2 O) HELIX 1 AA1 GLN A 8 VAL A 29 1 22 HELIX 2 AA2 ALA A 32 LYS A 48 1 17 HELIX 3 AA3 SER A 55 LYS A 61 1 7 HELIX 4 AA4 GLY A 66 GLY A 80 1 15 HELIX 5 AA5 LEU A 82 ASP A 91 1 10 HELIX 6 AA6 ASP A 91 THR A 101 1 11 HELIX 7 AA7 GLY A 107 GLU A 117 1 11 HELIX 8 AA8 THR A 121 ASN A 128 1 8 HELIX 9 AA9 GLU A 129 LEU A 132 5 4 HELIX 10 AB1 ASN A 133 TYR A 142 1 10 HELIX 11 AB2 TYR A 142 GLU A 147 1 6 HELIX 12 AB3 ARG A 152 ASP A 170 1 19 HELIX 13 AB4 CYS A 178 ARG A 183 1 6 HELIX 14 AB5 LYS A 209 VAL A 221 1 13 HELIX 15 AB6 PRO A 261 ASP A 263 5 3 HELIX 16 AB7 GLN A 264 PHE A 272 1 9 HELIX 17 AB8 SER A 275 GLU A 288 1 14 HELIX 18 AB9 SER A 315 ILE A 323 1 9 HELIX 19 AC1 GLU A 329 ARG A 333 5 5 SHEET 1 AA1 2 ILE A 150 PRO A 151 0 SHEET 2 AA1 2 SER A 187 SER A 188 -1 O SER A 188 N ILE A 150 SHEET 1 AA2 5 ILE A 174 VAL A 177 0 SHEET 2 AA2 5 MET A 191 THR A 196 -1 O THR A 196 N ILE A 174 SHEET 3 AA2 5 ARG A 253 LEU A 259 1 O ASP A 256 N VAL A 193 SHEET 4 AA2 5 LYS A 234 CYS A 239 -1 N CYS A 239 O ARG A 253 SHEET 5 AA2 5 ILE A 224 LYS A 230 -1 N SER A 229 O MET A 236 SHEET 1 AA3 2 PHE A 291 ILE A 293 0 SHEET 2 AA3 2 ILE A 298 PRO A 300 -1 O ARG A 299 N THR A 292 LINK O3' DC T 5 P F74 T 6 1555 1555 1.61 LINK O3' F74 T 6 P DT T 7 1555 1555 1.61 LINK O LYS A 60 NA NA A 402 1555 1555 2.44 LINK O LEU A 62 NA NA A 402 1555 1555 2.52 LINK O VAL A 65 NA NA A 402 1555 1555 2.49 LINK O THR A 101 NA NA A 401 1555 1555 2.33 LINK O VAL A 103 NA NA A 401 1555 1555 2.40 LINK O ILE A 106 NA NA A 401 1555 1555 2.43 LINK NA NA A 401 OP1 DG P 9 1555 1555 2.39 LINK NA NA A 401 O HOH P 111 1555 1555 2.65 LINK NA NA A 402 O HOH A 564 1555 1555 2.51 LINK NA NA A 402 OP1 DC D 3 1555 1555 2.62 LINK NA NA A 402 O HOH D 107 1555 1555 2.42 CISPEP 1 GLY A 274 SER A 275 0 1.46 CISPEP 2 HIS A 285 ALA A 286 0 16.93 CISPEP 3 LEU A 301 GLY A 302 0 22.77 SITE 1 AC1 5 THR A 101 VAL A 103 ILE A 106 DG P 9 SITE 2 AC1 5 HOH P 111 SITE 1 AC2 6 LYS A 60 LEU A 62 VAL A 65 HOH A 564 SITE 2 AC2 6 DC D 3 HOH D 107 CRYST1 54.772 79.668 54.967 90.00 105.60 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018258 0.000000 0.005099 0.00000 SCALE2 0.000000 0.012552 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018889 0.00000 TER 2594 GLU A 335 HETATM 2692 C6 F74 T 6 15.827 3.744 6.822 1.00 41.06 C HETATM 2693 C5 F74 T 6 15.393 4.309 5.523 1.00 41.16 C HETATM 2694 C8 F74 T 6 14.536 5.082 3.749 1.00 46.33 C HETATM 2695 C4 F74 T 6 16.458 4.711 4.571 1.00 42.55 C HETATM 2696 C2 F74 T 6 18.069 4.018 6.155 1.00 44.09 C HETATM 2697 O6 F74 T 6 14.987 3.381 7.674 1.00 42.29 O HETATM 2698 P F74 T 6 20.689 3.566 2.960 1.00 42.03 P HETATM 2699 OP1 F74 T 6 21.387 4.207 4.136 1.00 32.79 O HETATM 2700 OP2 F74 T 6 19.697 2.451 3.194 1.00 46.15 O HETATM 2701 O5' F74 T 6 19.943 4.733 2.139 1.00 41.93 O HETATM 2702 C5' F74 T 6 19.383 4.483 0.852 1.00 42.44 C HETATM 2703 C4' F74 T 6 18.095 5.278 0.676 1.00 41.42 C HETATM 2704 C3' F74 T 6 18.238 6.723 1.132 1.00 41.52 C HETATM 2705 C2' F74 T 6 17.461 6.802 2.429 1.00 38.36 C HETATM 2706 C1' F74 T 6 16.413 5.722 2.223 1.00 40.68 C HETATM 2707 O4' F74 T 6 17.054 4.694 1.465 1.00 43.72 O HETATM 2708 N9 F74 T 6 15.839 5.194 3.487 1.00 44.64 N HETATM 2709 N3 F74 T 6 17.750 4.544 4.943 1.00 38.55 N HETATM 2710 N2 F74 T 6 19.379 3.870 6.474 1.00 38.26 N HETATM 2711 N1 F74 T 6 17.141 3.635 7.054 1.00 41.30 N HETATM 2712 N7 F74 T 6 14.198 4.567 4.947 1.00 41.65 N HETATM 2713 CL F74 T 6 13.349 5.589 2.596 1.00 45.06 CL HETATM 2714 O3' F74 T 6 17.599 7.557 0.161 1.00 39.75 O TER 2917 DC T 16 TER 3123 DA P 10 TER 3230 DG D 5 HETATM 3231 NA NA A 401 19.715 1.984 22.117 1.00 21.91 NA HETATM 3232 NA NA A 402 31.508 -10.884 -3.188 1.00 36.04 NA HETATM 3233 O HOH A 501 -3.270 15.864 12.429 1.00 53.98 O HETATM 3234 O HOH A 502 6.805 9.557 17.836 1.00 30.89 O HETATM 3235 O HOH A 503 6.546 11.683 -2.903 1.00 27.69 O HETATM 3236 O HOH A 504 -3.144 14.050 14.439 1.00 27.80 O HETATM 3237 O HOH A 505 8.593 -7.126 24.308 1.00 29.62 O HETATM 3238 O HOH A 506 14.624 -10.040 27.900 1.00 30.29 O HETATM 3239 O HOH A 507 -3.100 -6.695 10.196 1.00 26.93 O HETATM 3240 O HOH A 508 20.245 -1.017 20.323 1.00 27.58 O HETATM 3241 O HOH A 509 9.143 -6.425 7.098 1.00 47.20 O HETATM 3242 O HOH A 510 37.575 3.102 8.906 1.00 27.64 O HETATM 3243 O HOH A 511 22.978 -9.878 2.028 1.00 34.96 O HETATM 3244 O HOH A 512 41.507 -21.069 6.956 1.00 30.33 O HETATM 3245 O HOH A 513 3.124 3.201 13.500 1.00 31.38 O HETATM 3246 O HOH A 514 30.107 5.461 20.415 1.00 21.63 O HETATM 3247 O HOH A 515 5.002 1.885 -0.727 1.00 34.54 O HETATM 3248 O HOH A 516 30.815 -28.251 3.199 1.00 35.03 O HETATM 3249 O HOH A 517 -18.203 8.339 13.115 1.00 31.38 O HETATM 3250 O HOH A 518 -1.092 13.258 18.819 1.00 25.05 O HETATM 3251 O HOH A 519 4.174 -5.455 1.541 1.00 38.20 O HETATM 3252 O HOH A 520 18.685 7.286 40.084 1.00 41.74 O HETATM 3253 O HOH A 521 2.116 -8.662 24.732 1.00 32.32 O HETATM 3254 O HOH A 522 15.324 -0.694 26.362 1.00 17.66 O HETATM 3255 O HOH A 523 -15.294 -1.918 18.263 1.00 34.83 O HETATM 3256 O HOH A 524 30.937 0.663 36.558 1.00 36.56 O HETATM 3257 O HOH A 525 19.864 -23.611 13.799 1.00 61.35 O HETATM 3258 O HOH A 526 17.964 5.733 36.545 1.00 39.57 O HETATM 3259 O HOH A 527 3.049 -4.772 13.909 1.00 29.36 O HETATM 3260 O HOH A 528 5.378 8.364 29.252 1.00 24.09 O HETATM 3261 O HOH A 529 26.849 4.482 14.321 1.00 26.83 O HETATM 3262 O HOH A 530 -18.502 4.822 19.739 1.00 27.99 O HETATM 3263 O HOH A 531 28.541 6.492 11.055 1.00 29.51 O HETATM 3264 O HOH A 532 15.620 -2.462 34.247 1.00 33.37 O HETATM 3265 O HOH A 533 11.999 3.568 6.627 1.00 39.11 O HETATM 3266 O HOH A 534 40.170 -18.294 0.979 1.00 33.09 O HETATM 3267 O HOH A 535 4.053 15.223 22.929 1.00 31.93 O HETATM 3268 O HOH A 536 1.478 -7.140 27.098 1.00 26.49 O HETATM 3269 O HOH A 537 6.042 -5.259 14.011 1.00 26.00 O HETATM 3270 O HOH A 538 3.255 -12.071 15.389 1.00 35.15 O HETATM 3271 O HOH A 539 17.531 9.586 23.223 1.00 29.13 O HETATM 3272 O HOH A 540 -4.707 -5.448 0.500 1.00 40.71 O HETATM 3273 O HOH A 541 -7.600 -8.555 23.874 1.00 29.26 O HETATM 3274 O HOH A 542 21.906 -3.831 6.451 1.00 36.76 O HETATM 3275 O HOH A 543 42.745 -16.245 15.527 1.00 29.14 O HETATM 3276 O HOH A 544 39.921 -3.411 29.070 1.00 31.90 O HETATM 3277 O HOH A 545 -3.153 14.428 17.429 1.00 34.47 O HETATM 3278 O HOH A 546 37.324 -25.406 10.340 1.00 39.03 O HETATM 3279 O HOH A 547 3.816 17.043 15.414 1.00 31.63 O HETATM 3280 O HOH A 548 35.883 1.306 11.545 1.00 22.58 O HETATM 3281 O HOH A 549 22.407 -9.863 9.161 1.00 26.71 O HETATM 3282 O HOH A 550 8.040 -6.462 11.628 1.00 38.09 O HETATM 3283 O HOH A 551 -5.585 -4.675 -1.895 1.00 36.50 O HETATM 3284 O HOH A 552 41.840 -10.638 13.895 1.00 34.33 O HETATM 3285 O HOH A 553 34.974 -1.113 17.125 1.00 29.12 O HETATM 3286 O HOH A 554 36.442 -22.774 12.979 1.00 39.47 O HETATM 3287 O HOH A 555 25.557 -20.091 16.275 1.00 44.64 O HETATM 3288 O HOH A 556 11.789 -5.108 31.749 1.00 30.49 O HETATM 3289 O HOH A 557 -12.663 1.644 12.858 1.00 23.19 O HETATM 3290 O HOH A 558 23.503 -8.746 18.287 1.00 29.00 O HETATM 3291 O HOH A 559 -0.455 -7.909 32.556 1.00 38.66 O HETATM 3292 O HOH A 560 32.199 -22.511 -4.246 1.00 34.49 O HETATM 3293 O HOH A 561 9.920 5.880 7.331 1.00 41.01 O HETATM 3294 O HOH A 562 -5.702 -5.521 4.041 1.00 34.94 O HETATM 3295 O HOH A 563 -10.087 -0.399 11.134 1.00 29.82 O HETATM 3296 O HOH A 564 30.273 -11.364 -5.317 1.00 35.35 O HETATM 3297 O HOH A 565 11.916 -1.022 1.944 1.00 44.24 O HETATM 3298 O HOH A 566 43.608 -14.436 7.484 1.00 36.13 O HETATM 3299 O HOH A 567 32.975 3.367 37.223 1.00 40.56 O HETATM 3300 O HOH A 568 -14.916 0.490 11.107 1.00 27.29 O HETATM 3301 O HOH A 569 10.262 5.457 1.393 1.00 37.50 O HETATM 3302 O HOH A 570 39.133 -0.012 28.058 1.00 40.57 O HETATM 3303 O HOH A 571 6.602 -2.320 -1.709 1.00 40.77 O HETATM 3304 O HOH A 572 -8.862 13.220 23.065 1.00 43.15 O HETATM 3305 O HOH A 573 33.612 -15.494 17.156 1.00 37.10 O HETATM 3306 O HOH A 574 25.105 -4.139 33.423 1.00 38.13 O HETATM 3307 O HOH A 575 35.674 2.570 23.000 1.00 37.79 O HETATM 3308 O HOH A 576 29.952 -5.865 24.343 1.00 40.49 O HETATM 3309 O HOH A 577 1.829 17.470 11.034 1.00 41.59 O HETATM 3310 O HOH A 578 41.010 -9.209 11.336 1.00 32.31 O HETATM 3311 O HOH A 579 42.029 -3.764 8.865 1.00 34.95 O HETATM 3312 O HOH A 580 45.424 -13.827 11.312 1.00 28.75 O HETATM 3313 O HOH A 581 38.268 -24.290 13.803 1.00 37.15 O HETATM 3314 O HOH A 582 25.954 -6.434 24.852 1.00 30.66 O HETATM 3315 O HOH A 583 -12.577 5.468 4.293 1.00 28.09 O HETATM 3316 O HOH A 584 20.214 -7.952 9.111 1.00 38.40 O HETATM 3317 O HOH A 585 11.446 7.646 -4.087 1.00 43.74 O HETATM 3318 O HOH T 101 26.280 2.266 -3.023 1.00 30.62 O HETATM 3319 O HOH T 102 29.472 6.585 -5.937 1.00 32.78 O HETATM 3320 O HOH T 103 13.896 14.354 29.149 1.00 26.40 O HETATM 3321 O HOH T 104 9.557 17.873 20.614 1.00 28.92 O HETATM 3322 O HOH T 105 19.986 16.980 19.850 1.00 32.78 O HETATM 3323 O HOH T 106 20.277 0.242 1.730 1.00 41.62 O HETATM 3324 O HOH T 107 9.859 9.559 10.697 1.00 30.54 O HETATM 3325 O HOH T 108 31.827 7.715 0.697 1.00 33.21 O HETATM 3326 O HOH T 109 12.405 11.390 19.700 1.00 20.51 O HETATM 3327 O HOH T 110 17.907 1.867 9.044 1.00 43.95 O HETATM 3328 O HOH T 111 16.924 14.023 11.182 1.00 30.08 O HETATM 3329 O HOH T 112 27.565 4.555 -5.514 1.00 33.91 O HETATM 3330 O HOH T 113 11.429 21.414 17.713 1.00 37.75 O HETATM 3331 O HOH T 114 11.007 18.740 16.420 1.00 29.82 O HETATM 3332 O HOH T 115 13.408 11.727 25.732 1.00 20.26 O HETATM 3333 O HOH T 116 12.355 18.867 24.078 1.00 30.86 O HETATM 3334 O HOH T 117 12.494 18.816 14.382 1.00 30.98 O HETATM 3335 O HOH T 118 8.357 17.123 13.256 1.00 41.69 O HETATM 3336 O HOH T 119 12.349 16.482 3.580 1.00 39.38 O HETATM 3337 O HOH T 120 14.468 11.697 22.846 1.00 21.17 O HETATM 3338 O HOH T 121 22.617 17.960 19.569 1.00 35.38 O HETATM 3339 O HOH T 122 8.217 17.674 15.809 1.00 35.76 O HETATM 3340 O HOH P 101 20.017 7.301 11.878 1.00 31.00 O HETATM 3341 O HOH P 102 21.080 4.906 16.935 1.00 27.63 O HETATM 3342 O HOH P 103 20.458 13.416 12.292 1.00 30.08 O HETATM 3343 O HOH P 104 14.045 9.142 19.018 1.00 19.15 O HETATM 3344 O HOH P 105 12.304 7.161 16.013 1.00 26.94 O HETATM 3345 O HOH P 106 20.491 28.558 14.549 1.00 42.42 O HETATM 3346 O HOH P 107 20.507 5.556 14.208 1.00 30.96 O HETATM 3347 O HOH P 108 21.909 10.931 23.170 1.00 24.14 O HETATM 3348 O HOH P 109 21.603 25.534 14.581 1.00 34.48 O HETATM 3349 O HOH P 110 18.882 29.656 13.192 1.00 45.66 O HETATM 3350 O HOH P 111 17.928 0.208 21.284 1.00 24.39 O HETATM 3351 O HOH D 101 38.381 0.811 6.429 1.00 30.31 O HETATM 3352 O HOH D 102 38.738 -1.850 10.993 1.00 25.78 O HETATM 3353 O HOH D 103 31.009 6.038 -9.270 1.00 43.74 O HETATM 3354 O HOH D 104 29.265 3.002 -7.847 1.00 39.45 O HETATM 3355 O HOH D 105 33.365 -5.212 -5.138 1.00 35.51 O HETATM 3356 O HOH D 106 28.707 -3.604 1.515 1.00 26.16 O HETATM 3357 O HOH D 107 33.476 -9.857 -4.146 1.00 29.01 O HETATM 3358 O HOH D 108 34.719 5.040 3.514 1.00 36.49 O CONECT 405 3232 CONECT 423 3232 CONECT 442 3232 CONECT 727 3231 CONECT 745 3231 CONECT 762 3231 CONECT 2681 2698 CONECT 2692 2693 2697 2711 CONECT 2693 2692 2695 2712 CONECT 2694 2708 2712 2713 CONECT 2695 2693 2708 2709 CONECT 2696 2709 2710 2711 CONECT 2697 2692 CONECT 2698 2681 2699 2700 2701 CONECT 2699 2698 CONECT 2700 2698 CONECT 2701 2698 2702 CONECT 2702 2701 2703 CONECT 2703 2702 2704 2707 CONECT 2704 2703 2705 2714 CONECT 2705 2704 2706 CONECT 2706 2705 2707 2708 CONECT 2707 2703 2706 CONECT 2708 2694 2695 2706 CONECT 2709 2695 2696 CONECT 2710 2696 CONECT 2711 2692 2696 CONECT 2712 2693 2694 CONECT 2713 2694 CONECT 2714 2704 2715 CONECT 2715 2714 CONECT 3081 3231 CONECT 3168 3232 CONECT 3231 727 745 762 3081 CONECT 3231 3350 CONECT 3232 405 423 442 3168 CONECT 3232 3296 3357 CONECT 3296 3232 CONECT 3350 3231 CONECT 3357 3232 MASTER 335 0 3 19 9 0 4 6 3354 4 40 30 END