HEADER TRANSCRIPTION 04-MAR-18 6CME TITLE STRUCTURE OF WILD-TYPE ISL2-LID IN COMPLEX WITH LHX4-LIM1+2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIM/HOMEOBOX PROTEIN LHX4,INSULIN GENE ENHANCER PROTEIN COMPND 3 ISL-2; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: LIM HOMEOBOX PROTEIN 4,ISLET-2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: LHX4, GSH-4, GSH4, ISL2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS LIM-HOMEODOMAIN, CELL-TYPE SPECIFICATION, NEURAL DEVELOPMENT, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR P.H.STOKES,A.SILVA,J.M.GUSS,J.M.MATTHEWS REVDAT 3 04-OCT-23 6CME 1 REMARK REVDAT 2 01-JAN-20 6CME 1 REMARK REVDAT 1 10-APR-19 6CME 0 JRNL AUTH P.H.STOKES,N.O.ROBERTSON,A.P.G.SILVA,T.ESTEPHAN,J.TREWHELLA, JRNL AUTH 2 J.M.GUSS,J.M.MATTHEWS JRNL TITL MUTATION IN A FLEXIBLE LINKER MODULATES BINDING AFFINITY FOR JRNL TITL 2 MODULAR COMPLEXES. JRNL REF PROTEINS V. 87 425 2019 JRNL REFN ESSN 1097-0134 JRNL PMID 30788856 JRNL DOI 10.1002/PROT.25675 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 28066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1495 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2064 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.3990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2432 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : -1.53000 REMARK 3 B33 (A**2) : 1.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.69000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.154 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.568 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2512 ; 0.006 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 2185 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3392 ; 1.116 ; 1.657 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5144 ; 0.825 ; 1.641 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 308 ; 7.140 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;33.878 ;22.374 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 425 ;13.703 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.719 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 319 ; 0.055 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2842 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 478 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1239 ; 1.852 ; 2.954 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1238 ; 1.849 ; 2.953 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1543 ; 3.040 ; 4.411 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1544 ; 3.040 ; 4.413 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1273 ; 2.330 ; 3.328 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1273 ; 2.329 ; 3.327 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1848 ; 3.848 ; 4.870 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2733 ; 5.848 ;34.658 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2685 ; 5.781 ;34.336 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6CME COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000230254. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : CONFOCAL MAXFLUX MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 1.99.2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.14 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29762 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 27.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.77000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.2.05 REMARK 200 STARTING MODEL: 3MMK REMARK 200 REMARK 200 REMARK: WEDGE-LIKE THIN SHEETS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 110 MM BISTRIS PROPANE AND 3 M REMARK 280 AMMONIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.42150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE AUTHORS STATE THAT LIGHT SCATTERING AND SAXS DATA REMARK 300 INDICATE THAT THE MOLECULE IS MONOMERIC ION SOLUTION. SAXS DATA REMARK 300 INDICATES A MORE ELONGATED STRUCTURE INDICATING THAT THE EXTREME REMARK 300 BEND IN THE STRUCTURE IS A CRYSTALLIZATION ARTIFACT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 22 REMARK 465 SER A 23 REMARK 465 MET A 24 REMARK 465 GLN A 25 REMARK 465 GLN A 260 REMARK 465 GLY A 261 REMARK 465 GLY A 262 REMARK 465 SER A 263 REMARK 465 GLY A 264 REMARK 465 GLY A 265 REMARK 465 HIS A 266 REMARK 465 MET A 267 REMARK 465 GLY A 268 REMARK 465 SER A 269 REMARK 465 GLY A 270 REMARK 465 GLY B 22 REMARK 465 SER B 23 REMARK 465 MET B 24 REMARK 465 GLN B 25 REMARK 465 GLN B 260 REMARK 465 GLY B 261 REMARK 465 GLY B 262 REMARK 465 SER B 263 REMARK 465 GLY B 264 REMARK 465 GLY B 265 REMARK 465 HIS B 266 REMARK 465 MET B 267 REMARK 465 GLY B 268 REMARK 465 SER B 269 REMARK 465 GLY B 270 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 46 -115.61 56.54 REMARK 500 ASP A 47 -15.28 87.85 REMARK 500 ASP A 59 -68.14 -90.97 REMARK 500 ASP A 66 -76.61 -97.29 REMARK 500 ALA A 72 -123.46 57.70 REMARK 500 GLN A 106 -120.88 45.25 REMARK 500 LEU B 46 -121.83 53.96 REMARK 500 ASP B 59 -70.73 -85.47 REMARK 500 ASP B 66 -72.04 -86.50 REMARK 500 ALA B 72 -123.20 57.66 REMARK 500 THR B 99 -11.60 74.21 REMARK 500 GLN B 106 -120.35 44.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 30 SG REMARK 620 2 CYS A 33 SG 112.6 REMARK 620 3 HIS A 51 ND1 103.5 96.5 REMARK 620 4 CYS A 54 SG 112.4 113.9 116.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 57 SG REMARK 620 2 CYS A 60 SG 108.8 REMARK 620 3 CYS A 77 SG 114.1 121.5 REMARK 620 4 ASP A 80 OD2 100.7 102.9 106.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 89 SG REMARK 620 2 CYS A 92 SG 111.1 REMARK 620 3 HIS A 111 ND1 104.8 104.0 REMARK 620 4 CYS A 114 SG 110.4 112.9 113.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 117 SG REMARK 620 2 CYS A 120 SG 109.5 REMARK 620 3 CYS A 140 SG 111.2 120.0 REMARK 620 4 ASP A 143 OD2 110.0 103.7 101.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 30 SG REMARK 620 2 CYS B 33 SG 112.2 REMARK 620 3 HIS B 51 ND1 103.3 98.4 REMARK 620 4 CYS B 54 SG 112.4 114.2 115.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 57 SG REMARK 620 2 CYS B 60 SG 110.0 REMARK 620 3 CYS B 77 SG 112.4 121.2 REMARK 620 4 ASP B 80 OD2 101.7 103.7 105.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 89 SG REMARK 620 2 CYS B 92 SG 110.9 REMARK 620 3 HIS B 111 ND1 103.4 98.0 REMARK 620 4 CYS B 114 SG 112.8 114.1 116.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 117 SG REMARK 620 2 CYS B 120 SG 108.8 REMARK 620 3 CYS B 140 SG 112.6 123.0 REMARK 620 4 ASP B 143 OD2 109.0 102.0 99.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MMK RELATED DB: PDB REMARK 900 3MMK CONTAINS LHX4 BOUND TO A MUTANT VERSION OF ISL2 REMARK 900 RELATED ID: 2RGT RELATED DB: PDB REMARK 900 2RGT IS A HOMOLOGOUS COMPLEX CONTAINING EQUIVALENT DOMAINS IN ISL1 REMARK 900 AND LHX4 REMARK 900 RELATED ID: 2JTN RELATED DB: PDB REMARK 900 2JTN IS A HOMOLOGOUS COMPLEX CONTAINING THE LIM DOMAINS OF LHX3 AND REMARK 900 THE LIM INTERACTION DOMAIN FROM LDB1 REMARK 900 RELATED ID: SASDDQ4 RELATED DB: SASBDB REMARK 900 RELATED ID: SASDDR4 RELATED DB: SASBDB DBREF 6CME A 24 260 UNP P53776 LHX4_MOUSE 24 149 DBREF 6CME A 272 301 UNP Q9CXV0 ISL2_MOUSE 272 301 DBREF 6CME B 24 260 UNP P53776 LHX4_MOUSE 24 149 DBREF 6CME B 272 301 UNP Q9CXV0 ISL2_MOUSE 272 301 SEQADV 6CME GLY A 22 UNP P53776 EXPRESSION TAG SEQADV 6CME SER A 23 UNP P53776 EXPRESSION TAG SEQADV 6CME GLY A 261 UNP P53776 LINKER SEQADV 6CME GLY A 262 UNP P53776 LINKER SEQADV 6CME SER A 263 UNP P53776 LINKER SEQADV 6CME GLY A 264 UNP P53776 LINKER SEQADV 6CME GLY A 265 UNP P53776 LINKER SEQADV 6CME HIS A 266 UNP P53776 LINKER SEQADV 6CME MET A 267 UNP P53776 LINKER SEQADV 6CME GLY A 268 UNP P53776 LINKER SEQADV 6CME SER A 269 UNP P53776 LINKER SEQADV 6CME GLY A 270 UNP P53776 LINKER SEQADV 6CME GLY A 271 UNP P53776 LINKER SEQADV 6CME GLY B 22 UNP P53776 EXPRESSION TAG SEQADV 6CME SER B 23 UNP P53776 EXPRESSION TAG SEQADV 6CME GLY B 261 UNP P53776 LINKER SEQADV 6CME GLY B 262 UNP P53776 LINKER SEQADV 6CME SER B 263 UNP P53776 LINKER SEQADV 6CME GLY B 264 UNP P53776 LINKER SEQADV 6CME GLY B 265 UNP P53776 LINKER SEQADV 6CME HIS B 266 UNP P53776 LINKER SEQADV 6CME MET B 267 UNP P53776 LINKER SEQADV 6CME GLY B 268 UNP P53776 LINKER SEQADV 6CME SER B 269 UNP P53776 LINKER SEQADV 6CME GLY B 270 UNP P53776 LINKER SEQADV 6CME GLY B 271 UNP P53776 LINKER SEQRES 1 A 169 GLY SER MET GLN GLN ILE PRO GLN CYS ALA GLY CYS ASN SEQRES 2 A 169 GLN HIS ILE LEU ASP LYS PHE ILE LEU LYS VAL LEU ASP SEQRES 3 A 169 ARG HIS TRP HIS SER SER CYS LEU LYS CYS ALA ASP CYS SEQRES 4 A 169 GLN MET GLN LEU ALA ASP ARG CYS PHE SER ARG ALA GLY SEQRES 5 A 169 SER VAL TYR CYS LYS GLU ASP PHE PHE LYS ARG PHE GLY SEQRES 6 A 169 THR LYS CYS THR ALA CYS GLN GLN GLY ILE PRO PRO THR SEQRES 7 A 169 GLN VAL VAL ARG LYS ALA GLN ASP PHE VAL TYR HIS LEU SEQRES 8 A 169 HIS CYS PHE ALA CYS ILE ILE CYS ASN ARG GLN LEU ALA SEQRES 9 A 169 THR GLY ASP GLU PHE TYR LEU MET GLU ASP GLY ARG LEU SEQRES 10 A 169 VAL CYS LYS GLU ASP TYR GLU THR ALA LYS GLN GLY GLY SEQRES 11 A 169 SER GLY GLY HIS MET GLY SER GLY GLY GLY THR PRO LEU SEQRES 12 A 169 VAL ALA GLY SER PRO ILE ARG HIS GLU ASN ALA VAL GLN SEQRES 13 A 169 GLY SER ALA VAL GLU VAL GLN THR TYR GLN PRO PRO TRP SEQRES 1 B 169 GLY SER MET GLN GLN ILE PRO GLN CYS ALA GLY CYS ASN SEQRES 2 B 169 GLN HIS ILE LEU ASP LYS PHE ILE LEU LYS VAL LEU ASP SEQRES 3 B 169 ARG HIS TRP HIS SER SER CYS LEU LYS CYS ALA ASP CYS SEQRES 4 B 169 GLN MET GLN LEU ALA ASP ARG CYS PHE SER ARG ALA GLY SEQRES 5 B 169 SER VAL TYR CYS LYS GLU ASP PHE PHE LYS ARG PHE GLY SEQRES 6 B 169 THR LYS CYS THR ALA CYS GLN GLN GLY ILE PRO PRO THR SEQRES 7 B 169 GLN VAL VAL ARG LYS ALA GLN ASP PHE VAL TYR HIS LEU SEQRES 8 B 169 HIS CYS PHE ALA CYS ILE ILE CYS ASN ARG GLN LEU ALA SEQRES 9 B 169 THR GLY ASP GLU PHE TYR LEU MET GLU ASP GLY ARG LEU SEQRES 10 B 169 VAL CYS LYS GLU ASP TYR GLU THR ALA LYS GLN GLY GLY SEQRES 11 B 169 SER GLY GLY HIS MET GLY SER GLY GLY GLY THR PRO LEU SEQRES 12 B 169 VAL ALA GLY SER PRO ILE ARG HIS GLU ASN ALA VAL GLN SEQRES 13 B 169 GLY SER ALA VAL GLU VAL GLN THR TYR GLN PRO PRO TRP HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET ZN B 401 1 HET ZN B 402 1 HET ZN B 403 1 HET ZN B 404 1 HETNAM ZN ZINC ION FORMUL 3 ZN 8(ZN 2+) FORMUL 11 HOH *210(H2 O) HELIX 1 AA1 CYS A 77 PHE A 85 1 9 HELIX 2 AA2 HIS A 111 PHE A 115 5 5 HELIX 3 AA3 LYS A 141 LYS A 148 1 8 HELIX 4 AA4 ARG A 282 ALA A 286 5 5 HELIX 5 AA5 CYS B 77 PHE B 85 1 9 HELIX 6 AA6 HIS B 111 PHE B 115 5 5 HELIX 7 AA7 LYS B 141 LYS B 148 1 8 HELIX 8 AA8 HIS B 283 VAL B 287 1 5 SHEET 1 AA1 3 ARG A 48 TRP A 50 0 SHEET 2 AA1 3 PHE A 41 VAL A 45 -1 N LEU A 43 O TRP A 50 SHEET 3 AA1 3 GLU A 293 THR A 296 -1 O GLN A 295 N ILE A 42 SHEET 1 AA2 3 SER A 74 TYR A 76 0 SHEET 2 AA2 3 ARG A 67 ARG A 71 -1 N PHE A 69 O TYR A 76 SHEET 3 AA2 3 SER A 290 ALA A 291 -1 O SER A 290 N CYS A 68 SHEET 1 AA3 2 THR A 87 LYS A 88 0 SHEET 2 AA3 2 GLY A 95 ILE A 96 -1 O ILE A 96 N THR A 87 SHEET 1 AA4 2 ARG A 103 ALA A 105 0 SHEET 2 AA4 2 PHE A 108 TYR A 110 -1 O PHE A 108 N ALA A 105 SHEET 1 AA5 3 LEU A 138 CYS A 140 0 SHEET 2 AA5 3 GLU A 129 LEU A 132 -1 N TYR A 131 O VAL A 139 SHEET 3 AA5 3 THR A 273 VAL A 276 -1 O LEU A 275 N PHE A 130 SHEET 1 AA6 5 ARG B 48 TRP B 50 0 SHEET 2 AA6 5 PHE B 41 VAL B 45 -1 N LEU B 43 O TRP B 50 SHEET 3 AA6 5 SER B 290 THR B 296 -1 O GLN B 295 N ILE B 42 SHEET 4 AA6 5 ARG B 67 ARG B 71 -1 N CYS B 68 O SER B 290 SHEET 5 AA6 5 SER B 74 TYR B 76 -1 O TYR B 76 N PHE B 69 SHEET 1 AA7 3 PHE B 108 TYR B 110 0 SHEET 2 AA7 3 VAL B 101 ALA B 105 -1 N ALA B 105 O PHE B 108 SHEET 3 AA7 3 ILE B 281 ARG B 282 -1 O ILE B 281 N VAL B 102 SHEET 1 AA8 3 LEU B 138 CYS B 140 0 SHEET 2 AA8 3 GLU B 129 LEU B 132 -1 N TYR B 131 O VAL B 139 SHEET 3 AA8 3 THR B 273 VAL B 276 -1 O LEU B 275 N PHE B 130 LINK SG CYS A 30 ZN ZN A 401 1555 1555 2.39 LINK SG CYS A 33 ZN ZN A 401 1555 1555 2.28 LINK ND1 HIS A 51 ZN ZN A 401 1555 1555 2.20 LINK SG CYS A 54 ZN ZN A 401 1555 1555 2.30 LINK SG CYS A 57 ZN ZN A 402 1555 1555 2.38 LINK SG CYS A 60 ZN ZN A 402 1555 1555 2.31 LINK SG CYS A 77 ZN ZN A 402 1555 1555 2.18 LINK OD2 ASP A 80 ZN ZN A 402 1555 1555 1.93 LINK SG CYS A 89 ZN ZN A 403 1555 1555 2.44 LINK SG CYS A 92 ZN ZN A 403 1555 1555 2.20 LINK ND1 HIS A 111 ZN ZN A 403 1555 1555 2.04 LINK SG CYS A 114 ZN ZN A 403 1555 1555 2.38 LINK SG CYS A 117 ZN ZN A 404 1555 1555 2.27 LINK SG CYS A 120 ZN ZN A 404 1555 1555 2.32 LINK SG CYS A 140 ZN ZN A 404 1555 1555 2.28 LINK OD2 ASP A 143 ZN ZN A 404 1555 1555 2.00 LINK SG CYS B 30 ZN ZN B 401 1555 1555 2.44 LINK SG CYS B 33 ZN ZN B 401 1555 1555 2.26 LINK ND1 HIS B 51 ZN ZN B 401 1555 1555 2.11 LINK SG CYS B 54 ZN ZN B 401 1555 1555 2.24 LINK SG CYS B 57 ZN ZN B 402 1555 1555 2.40 LINK SG CYS B 60 ZN ZN B 402 1555 1555 2.30 LINK SG CYS B 77 ZN ZN B 402 1555 1555 2.23 LINK OD2 ASP B 80 ZN ZN B 402 1555 1555 1.84 LINK SG CYS B 89 ZN ZN B 403 1555 1555 2.35 LINK SG CYS B 92 ZN ZN B 403 1555 1555 2.26 LINK ND1 HIS B 111 ZN ZN B 403 1555 1555 2.00 LINK SG CYS B 114 ZN ZN B 403 1555 1555 2.27 LINK SG CYS B 117 ZN ZN B 404 1555 1555 2.32 LINK SG CYS B 120 ZN ZN B 404 1555 1555 2.33 LINK SG CYS B 140 ZN ZN B 404 1555 1555 2.31 LINK OD2 ASP B 143 ZN ZN B 404 1555 1555 1.96 CISPEP 1 PRO A 299 PRO A 300 0 1.30 CISPEP 2 PRO B 299 PRO B 300 0 2.74 SITE 1 AC1 4 CYS A 30 CYS A 33 HIS A 51 CYS A 54 SITE 1 AC2 4 CYS A 57 CYS A 60 CYS A 77 ASP A 80 SITE 1 AC3 4 CYS A 89 CYS A 92 HIS A 111 CYS A 114 SITE 1 AC4 4 CYS A 117 CYS A 120 CYS A 140 ASP A 143 SITE 1 AC5 4 CYS B 30 CYS B 33 HIS B 51 CYS B 54 SITE 1 AC6 4 CYS B 57 CYS B 60 CYS B 77 ASP B 80 SITE 1 AC7 4 CYS B 89 CYS B 92 HIS B 111 CYS B 114 SITE 1 AC8 4 CYS B 117 CYS B 120 CYS B 140 ASP B 143 CRYST1 47.488 88.843 50.303 90.00 111.33 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021058 0.000000 0.008222 0.00000 SCALE2 0.000000 0.011256 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021341 0.00000