HEADER CIRCADIAN CLOCK PROTEIN 09-MAR-18 6CNY TITLE 2.3 ANGSTROM STRUCTURE OF PHOSPHODIESTERASE TREATED VIVID (COMPLEX TITLE 2 WITH FMN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIVID PAS PROTEIN VVD; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 37-184; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: VVD (UNIPROTKB - Q9C3Y6) WAS N-TERMINALLY TRUNCATED BY COMPND 7 36 RESIDUES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEUROSPORA CRASSA; SOURCE 3 ORGANISM_TAXID: 5141; SOURCE 4 GENE: VVD, G17A4.050, GE21DRAFT_9175; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS LOV DOMAIN; FLAVIN; PHOTORECEPTOR; CIRCADIAN CLOCK, CIRCADIAN CLOCK KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.D.ZOLTOWSKI,I.G.SHABALIN,M.KOWIEL,P.J.POREBSKI,B.R.CRANE,A.M.BILWES REVDAT 5 04-OCT-23 6CNY 1 REMARK REVDAT 4 23-MAR-22 6CNY 1 REMARK REVDAT 3 20-FEB-19 6CNY 1 COMPND REVDAT 2 10-OCT-18 6CNY 1 COMPND JRNL REVDAT 1 21-MAR-18 6CNY 0 SPRSDE 21-MAR-18 6CNY 2PDT JRNL AUTH B.D.ZOLTOWSKI,C.SCHWERDTFEGER,J.WIDOM,J.J.LOROS,A.M.BILWES, JRNL AUTH 2 J.C.DUNLAP,B.R.CRANE JRNL TITL CONFORMATIONAL SWITCHING IN THE FUNGAL LIGHT SENSOR VIVID. JRNL REF SCIENCE V. 316 1054 2007 JRNL REFN ESSN 1095-9203 JRNL PMID 17510367 JRNL DOI 10.1126/SCIENCE.1137128 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.KOWIEL,D.BRZEZINSKI,P.J.POREBSKI,I.G.SHABALIN,M.JASKOLSKI, REMARK 1 AUTH 2 W.MINOR REMARK 1 TITL AUTOMATIC RECOGNITION OF LIGANDS IN ELECTRON DENSITY BY REMARK 1 TITL 2 MACHINE LEARNING. REMARK 1 REF BIOINFORMATICS 2018 REMARK 1 REFN ESSN 1367-4811 REMARK 1 PMID 30016407 REMARK 1 DOI 10.1093/BIOINFORMATICS/BTY626 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 36724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1054 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2488 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.2130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4587 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 124 REMARK 3 SOLVENT ATOMS : 477 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 17.30000 REMARK 3 B22 (A**2) : -23.23000 REMARK 3 B33 (A**2) : 5.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.62000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.042 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.035 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.674 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4816 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4378 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6527 ; 1.578 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10182 ; 0.999 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 574 ; 6.070 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 226 ;35.862 ;24.336 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 830 ;14.953 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;11.235 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 707 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5663 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 952 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 43 183 B 43 183 8990 0.060 0.050 REMARK 3 2 A 38 184 C 38 184 9482 0.040 0.050 REMARK 3 3 A 43 183 D 43 183 8986 0.060 0.050 REMARK 3 4 B 43 183 C 43 183 9000 0.060 0.050 REMARK 3 5 B 43 184 D 43 184 9174 0.040 0.050 REMARK 3 6 C 43 183 D 43 183 8994 0.070 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 60 REMARK 3 ORIGIN FOR THE GROUP (A): -7.4880 53.9130 4.9030 REMARK 3 T TENSOR REMARK 3 T11: 0.0406 T22: 0.0746 REMARK 3 T33: 0.1505 T12: 0.0204 REMARK 3 T13: 0.0524 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 3.1046 L22: 5.0918 REMARK 3 L33: 11.5094 L12: -1.4801 REMARK 3 L13: 2.7199 L23: -3.4677 REMARK 3 S TENSOR REMARK 3 S11: -0.0742 S12: 0.0916 S13: 0.2745 REMARK 3 S21: -0.0662 S22: -0.1798 S23: -0.2081 REMARK 3 S31: -0.0617 S32: 0.2571 S33: 0.2540 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 61 A 84 REMARK 3 ORIGIN FOR THE GROUP (A): -4.7410 47.6850 1.6230 REMARK 3 T TENSOR REMARK 3 T11: 0.1044 T22: 0.0899 REMARK 3 T33: 0.1635 T12: 0.0011 REMARK 3 T13: 0.0524 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 6.0527 L22: 4.5766 REMARK 3 L33: 4.8371 L12: -0.2236 REMARK 3 L13: -1.1486 L23: 0.6397 REMARK 3 S TENSOR REMARK 3 S11: -0.1099 S12: 0.3501 S13: 0.1163 REMARK 3 S21: -0.2945 S22: 0.0418 S23: 0.1953 REMARK 3 S31: -0.1125 S32: -0.3269 S33: 0.0680 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 85 A 105 REMARK 3 ORIGIN FOR THE GROUP (A): -8.5690 37.4680 8.0540 REMARK 3 T TENSOR REMARK 3 T11: 0.0953 T22: 0.1075 REMARK 3 T33: 0.1136 T12: 0.0193 REMARK 3 T13: 0.0919 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 4.2329 L22: 6.4348 REMARK 3 L33: 5.8410 L12: 2.3271 REMARK 3 L13: 2.7770 L23: 1.6674 REMARK 3 S TENSOR REMARK 3 S11: -0.1319 S12: -0.2258 S13: -0.2030 REMARK 3 S21: 0.3567 S22: 0.0198 S23: 0.4431 REMARK 3 S31: 0.3586 S32: -0.2559 S33: 0.1121 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 106 A 136 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4230 34.3980 -1.5300 REMARK 3 T TENSOR REMARK 3 T11: 0.1287 T22: 0.2147 REMARK 3 T33: 0.2876 T12: 0.0732 REMARK 3 T13: 0.0347 T23: 0.0846 REMARK 3 L TENSOR REMARK 3 L11: 2.8812 L22: 5.1923 REMARK 3 L33: 3.7461 L12: -0.2563 REMARK 3 L13: -0.9202 L23: 3.9026 REMARK 3 S TENSOR REMARK 3 S11: -0.1133 S12: -0.2656 S13: -0.3266 REMARK 3 S21: 0.5027 S22: 0.1353 S23: -0.4011 REMARK 3 S31: 0.4347 S32: 0.3104 S33: -0.0219 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 137 A 184 REMARK 3 ORIGIN FOR THE GROUP (A): -2.4010 44.2360 -1.8340 REMARK 3 T TENSOR REMARK 3 T11: 0.0443 T22: 0.1037 REMARK 3 T33: 0.0726 T12: 0.0119 REMARK 3 T13: 0.0271 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 1.6592 L22: 6.8317 REMARK 3 L33: 1.9521 L12: 0.3446 REMARK 3 L13: -0.3956 L23: 1.1482 REMARK 3 S TENSOR REMARK 3 S11: -0.0056 S12: 0.0894 S13: 0.0231 REMARK 3 S21: -0.2760 S22: -0.0475 S23: 0.0045 REMARK 3 S31: -0.0952 S32: -0.0875 S33: 0.0531 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 43 B 105 REMARK 3 ORIGIN FOR THE GROUP (A): -24.8820 65.3600 3.9900 REMARK 3 T TENSOR REMARK 3 T11: 0.1028 T22: 0.1790 REMARK 3 T33: 0.2007 T12: 0.0213 REMARK 3 T13: -0.0052 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 6.2209 L22: 4.8604 REMARK 3 L33: 2.0864 L12: -1.7898 REMARK 3 L13: 0.8011 L23: 0.6734 REMARK 3 S TENSOR REMARK 3 S11: -0.0382 S12: 0.1689 S13: 0.2035 REMARK 3 S21: 0.1098 S22: 0.0825 S23: -0.0455 REMARK 3 S31: -0.0564 S32: -0.0076 S33: -0.0444 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 106 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): -33.6840 77.6340 3.9450 REMARK 3 T TENSOR REMARK 3 T11: 0.4395 T22: 0.2908 REMARK 3 T33: 0.5101 T12: -0.0244 REMARK 3 T13: 0.0321 T23: -0.0611 REMARK 3 L TENSOR REMARK 3 L11: 3.1812 L22: 12.2514 REMARK 3 L33: 13.5349 L12: -3.0690 REMARK 3 L13: -0.9711 L23: -9.9411 REMARK 3 S TENSOR REMARK 3 S11: -0.3059 S12: -0.2892 S13: 0.6183 REMARK 3 S21: 1.3414 S22: -0.0156 S23: -0.7626 REMARK 3 S31: -0.7910 S32: 0.3723 S33: 0.3215 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 115 B 120 REMARK 3 ORIGIN FOR THE GROUP (A): -38.9940 81.6230 4.9920 REMARK 3 T TENSOR REMARK 3 T11: 0.5875 T22: 0.6738 REMARK 3 T33: 0.8895 T12: -0.1334 REMARK 3 T13: -0.0802 T23: -0.2204 REMARK 3 L TENSOR REMARK 3 L11: 24.0427 L22: 19.6409 REMARK 3 L33: 5.6244 L12: 12.5994 REMARK 3 L13: -9.5120 L23: -9.8959 REMARK 3 S TENSOR REMARK 3 S11: -1.7951 S12: 2.0381 S13: 0.6402 REMARK 3 S21: 0.6082 S22: 2.2285 S23: 0.6258 REMARK 3 S31: 0.1074 S32: -1.2321 S33: -0.4334 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 121 B 139 REMARK 3 ORIGIN FOR THE GROUP (A): -39.4430 75.1660 -5.6680 REMARK 3 T TENSOR REMARK 3 T11: 0.1830 T22: 0.4535 REMARK 3 T33: 0.3425 T12: 0.0692 REMARK 3 T13: 0.0258 T23: 0.0416 REMARK 3 L TENSOR REMARK 3 L11: 5.0186 L22: 11.1642 REMARK 3 L33: 0.3285 L12: -4.3779 REMARK 3 L13: 1.2216 L23: -0.6090 REMARK 3 S TENSOR REMARK 3 S11: 0.2939 S12: 0.3108 S13: 0.0036 REMARK 3 S21: 0.0852 S22: -0.3763 S23: 1.0274 REMARK 3 S31: 0.0864 S32: 0.0936 S33: 0.0823 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 140 B 184 REMARK 3 ORIGIN FOR THE GROUP (A): -28.8790 68.3770 -1.4060 REMARK 3 T TENSOR REMARK 3 T11: 0.0959 T22: 0.2715 REMARK 3 T33: 0.2939 T12: 0.0297 REMARK 3 T13: 0.0049 T23: 0.0331 REMARK 3 L TENSOR REMARK 3 L11: 2.6359 L22: 7.2128 REMARK 3 L33: 1.6987 L12: -1.4685 REMARK 3 L13: 0.2984 L23: 0.0805 REMARK 3 S TENSOR REMARK 3 S11: 0.1738 S12: 0.3658 S13: 0.3504 REMARK 3 S21: -0.1036 S22: -0.2731 S23: -0.2158 REMARK 3 S31: -0.0845 S32: 0.0265 S33: 0.0992 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 38 C 62 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0700 26.7020 35.7290 REMARK 3 T TENSOR REMARK 3 T11: 0.0333 T22: 0.0729 REMARK 3 T33: 0.1353 T12: -0.0124 REMARK 3 T13: 0.0278 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 2.6382 L22: 4.4856 REMARK 3 L33: 6.3054 L12: -1.5068 REMARK 3 L13: -2.0033 L23: 2.6114 REMARK 3 S TENSOR REMARK 3 S11: -0.1170 S12: 0.1806 S13: -0.2695 REMARK 3 S21: -0.0923 S22: -0.0875 S23: 0.1358 REMARK 3 S31: 0.2633 S32: -0.1169 S33: 0.2045 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 63 C 98 REMARK 3 ORIGIN FOR THE GROUP (A): 7.2230 37.3750 36.3400 REMARK 3 T TENSOR REMARK 3 T11: 0.0500 T22: 0.0548 REMARK 3 T33: 0.1121 T12: 0.0099 REMARK 3 T13: 0.0053 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 4.4061 L22: 4.4532 REMARK 3 L33: 4.1732 L12: 0.6411 REMARK 3 L13: 0.0144 L23: -0.6565 REMARK 3 S TENSOR REMARK 3 S11: -0.1486 S12: 0.1532 S13: -0.0992 REMARK 3 S21: -0.0786 S22: 0.0377 S23: -0.4259 REMARK 3 S31: -0.0473 S32: 0.3143 S33: 0.1108 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 99 C 128 REMARK 3 ORIGIN FOR THE GROUP (A): -2.7040 47.6470 34.7440 REMARK 3 T TENSOR REMARK 3 T11: 0.1445 T22: 0.1032 REMARK 3 T33: 0.1687 T12: 0.0348 REMARK 3 T13: 0.0292 T23: -0.0295 REMARK 3 L TENSOR REMARK 3 L11: 2.0965 L22: 2.9070 REMARK 3 L33: 6.8777 L12: -0.8604 REMARK 3 L13: 3.0549 L23: -3.0288 REMARK 3 S TENSOR REMARK 3 S11: -0.1458 S12: -0.2331 S13: 0.2253 REMARK 3 S21: 0.2779 S22: 0.1504 S23: 0.2146 REMARK 3 S31: -0.4137 S32: -0.3746 S33: -0.0047 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 129 C 148 REMARK 3 ORIGIN FOR THE GROUP (A): -4.8080 35.7450 25.1880 REMARK 3 T TENSOR REMARK 3 T11: 0.1020 T22: 0.1071 REMARK 3 T33: 0.1489 T12: -0.0163 REMARK 3 T13: -0.0202 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 1.6463 L22: 10.0978 REMARK 3 L33: 4.1588 L12: -1.5953 REMARK 3 L13: 0.0178 L23: -2.5932 REMARK 3 S TENSOR REMARK 3 S11: 0.1206 S12: 0.1648 S13: -0.1945 REMARK 3 S21: -0.2203 S22: 0.1330 S23: 0.6419 REMARK 3 S31: 0.1945 S32: -0.1682 S33: -0.2536 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 149 C 184 REMARK 3 ORIGIN FOR THE GROUP (A): 4.1520 37.4160 31.5420 REMARK 3 T TENSOR REMARK 3 T11: 0.0315 T22: 0.1278 REMARK 3 T33: 0.1049 T12: 0.0066 REMARK 3 T13: 0.0182 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 1.5003 L22: 8.5360 REMARK 3 L33: 2.7448 L12: -0.6042 REMARK 3 L13: 0.5422 L23: -1.2402 REMARK 3 S TENSOR REMARK 3 S11: 0.0054 S12: 0.1145 S13: 0.0892 REMARK 3 S21: -0.3557 S22: -0.0546 S23: -0.1538 REMARK 3 S31: 0.0039 S32: 0.2273 S33: 0.0492 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 43 D 81 REMARK 3 ORIGIN FOR THE GROUP (A): 24.5470 20.1220 32.9860 REMARK 3 T TENSOR REMARK 3 T11: 0.0813 T22: 0.1207 REMARK 3 T33: 0.1815 T12: 0.0130 REMARK 3 T13: 0.0673 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 6.3677 L22: 4.8553 REMARK 3 L33: 3.1630 L12: -2.4523 REMARK 3 L13: 0.0063 L23: -1.0426 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: 0.4002 S13: 0.1229 REMARK 3 S21: -0.0306 S22: -0.0185 S23: -0.2038 REMARK 3 S31: 0.0164 S32: 0.0713 S33: 0.0294 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 82 D 102 REMARK 3 ORIGIN FOR THE GROUP (A): 25.0790 6.9500 40.5800 REMARK 3 T TENSOR REMARK 3 T11: 0.1392 T22: 0.1659 REMARK 3 T33: 0.2452 T12: 0.0380 REMARK 3 T13: 0.0846 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 9.5578 L22: 5.5916 REMARK 3 L33: 0.8304 L12: 2.3363 REMARK 3 L13: 0.3487 L23: 0.1243 REMARK 3 S TENSOR REMARK 3 S11: -0.0416 S12: -0.3794 S13: -0.7122 REMARK 3 S21: 0.4093 S22: 0.0170 S23: 0.2006 REMARK 3 S31: 0.0835 S32: 0.0762 S33: 0.0247 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 103 D 115 REMARK 3 ORIGIN FOR THE GROUP (A): 33.0340 3.1130 37.7180 REMARK 3 T TENSOR REMARK 3 T11: 0.1234 T22: 0.1758 REMARK 3 T33: 0.3717 T12: 0.0733 REMARK 3 T13: 0.0619 T23: 0.0532 REMARK 3 L TENSOR REMARK 3 L11: 4.9769 L22: 13.3078 REMARK 3 L33: 7.9056 L12: 0.0215 REMARK 3 L13: 0.2250 L23: 7.6766 REMARK 3 S TENSOR REMARK 3 S11: -0.2257 S12: -0.1007 S13: -1.1619 REMARK 3 S21: 0.9452 S22: 0.1071 S23: -0.1743 REMARK 3 S31: 0.6659 S32: 0.1970 S33: 0.1185 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 116 D 134 REMARK 3 ORIGIN FOR THE GROUP (A): 39.7370 1.7140 28.8680 REMARK 3 T TENSOR REMARK 3 T11: 0.2873 T22: 0.4393 REMARK 3 T33: 0.5110 T12: 0.1571 REMARK 3 T13: 0.0012 T23: -0.1084 REMARK 3 L TENSOR REMARK 3 L11: 6.1645 L22: 7.8704 REMARK 3 L33: 0.1841 L12: -2.7898 REMARK 3 L13: 0.5952 L23: -1.1817 REMARK 3 S TENSOR REMARK 3 S11: 0.2360 S12: -0.0670 S13: -0.3378 REMARK 3 S21: 0.2277 S22: -0.3079 S23: -0.4864 REMARK 3 S31: -0.0184 S32: 0.0381 S33: 0.0718 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 135 D 184 REMARK 3 ORIGIN FOR THE GROUP (A): 29.8540 12.2700 30.2810 REMARK 3 T TENSOR REMARK 3 T11: 0.0629 T22: 0.2421 REMARK 3 T33: 0.1904 T12: 0.0337 REMARK 3 T13: 0.0337 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 3.1442 L22: 7.9149 REMARK 3 L33: 2.1638 L12: -1.1371 REMARK 3 L13: 0.1887 L23: -0.3809 REMARK 3 S TENSOR REMARK 3 S11: 0.1878 S12: 0.4496 S13: -0.1883 REMARK 3 S21: -0.0967 S22: -0.2209 S23: -0.1246 REMARK 3 S31: 0.0707 S32: 0.1778 S33: 0.0332 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6CNY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000233120. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.100 REMARK 200 MONOCHROMATOR : DOUBLE SILICON CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38172 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : 0.07300 REMARK 200 FOR THE DATA SET : 25.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.54200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.870 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1G28 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AN EQUAL VOLUME (2 UL) OF PROTEIN REMARK 280 DISSOLVED IN A BUFFER CONTAINING 50 MM HEPES PH 8.0, 150 MM NACL REMARK 280 AND 13% GLYCEROL WAS MIXED WITH THE RESERVOIR SOLUTION REMARK 280 CONTAINING 100 MM TRISODIUM CITRATE PH 5.6, 100 MM AMMONIUM REMARK 280 ACETATE AND 30% PEG 5K MME, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.28500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE PROTEIN WAS TREATED WITH PHOSPHODIESTERASE, WHICH RESULTED IN REMARK 400 HYDROLYSIS OF FAD INTO FMN REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 36 REMARK 465 HIS A 37 REMARK 465 THR A 185 REMARK 465 GLU A 186 REMARK 465 MET B 36 REMARK 465 HIS B 37 REMARK 465 THR B 38 REMARK 465 LEU B 39 REMARK 465 TYR B 40 REMARK 465 ALA B 41 REMARK 465 PRO B 42 REMARK 465 THR B 185 REMARK 465 GLU B 186 REMARK 465 MET C 36 REMARK 465 HIS C 37 REMARK 465 THR C 185 REMARK 465 GLU C 186 REMARK 465 MET D 36 REMARK 465 HIS D 37 REMARK 465 THR D 38 REMARK 465 LEU D 39 REMARK 465 TYR D 40 REMARK 465 ALA D 41 REMARK 465 PRO D 42 REMARK 465 THR D 185 REMARK 465 GLU D 186 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 ARG B 141 NE CZ NH1 NH2 REMARK 470 LYS D 137 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 310 O HOH A 420 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLY B 43 N TYR D 45 2556 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 136 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 124 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG C 124 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG C 136 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG D 124 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 121 -9.12 69.68 REMARK 500 LYS B 121 -12.12 71.99 REMARK 500 LYS C 121 -10.78 71.15 REMARK 500 LYS D 121 -11.14 70.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 FMN WAS CREATED BY PHOSPHODIESTERASE TREATMENT OF BOUND FAD REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN D 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PD7 RELATED DB: PDB REMARK 900 DARK STATE STRUCTURE OF THE NATIVE PROTEIN REMARK 900 RELATED ID: 2PD8 RELATED DB: PDB REMARK 900 DARK STATE STRUCTURE OF THE C71S MUTANT OF THE SAME PROTEIN REMARK 900 RELATED ID: 2PDR RELATED DB: PDB REMARK 900 LIGHT STATE STRUCTURE OF THE NATIVE PROTEIN DBREF 6CNY A 37 186 UNP Q9C3Y6 Q9C3Y6_NEUCS 37 186 DBREF 6CNY B 37 186 UNP Q9C3Y6 Q9C3Y6_NEUCS 37 186 DBREF 6CNY C 37 186 UNP Q9C3Y6 Q9C3Y6_NEUCS 37 186 DBREF 6CNY D 37 186 UNP Q9C3Y6 Q9C3Y6_NEUCS 37 186 SEQADV 6CNY MET A 36 UNP Q9C3Y6 INITIATING METHIONINE SEQADV 6CNY MET B 36 UNP Q9C3Y6 INITIATING METHIONINE SEQADV 6CNY MET C 36 UNP Q9C3Y6 INITIATING METHIONINE SEQADV 6CNY MET D 36 UNP Q9C3Y6 INITIATING METHIONINE SEQRES 1 A 151 MET HIS THR LEU TYR ALA PRO GLY GLY TYR ASP ILE MET SEQRES 2 A 151 GLY TYR LEU ILE GLN ILE MET ASN ARG PRO ASN PRO GLN SEQRES 3 A 151 VAL GLU LEU GLY PRO VAL ASP THR SER CSX ALA LEU ILE SEQRES 4 A 151 LEU CYS ASP LEU LYS GLN LYS ASP THR PRO ILE VAL TYR SEQRES 5 A 151 ALA SER GLU ALA PHE LEU TYR MET THR GLY TYR SER ASN SEQRES 6 A 151 ALA GLU VAL LEU GLY ARG ASN CYS ARG PHE LEU GLN SER SEQRES 7 A 151 PRO ASP GLY MET VAL LYS PRO LYS SER THR ARG LYS TYR SEQRES 8 A 151 VAL ASP SER ASN THR ILE ASN THR MET ARG LYS ALA ILE SEQRES 9 A 151 ASP ARG ASN ALA GLU VAL GLN VAL GLU VAL VAL ASN PHE SEQRES 10 A 151 LYS LYS ASN GLY GLN ARG PHE VAL ASN PHE LEU THR MET SEQRES 11 A 151 ILE PRO VAL ARG ASP GLU THR GLY GLU TYR ARG TYR SER SEQRES 12 A 151 MET GLY PHE GLN CYS GLU THR GLU SEQRES 1 B 151 MET HIS THR LEU TYR ALA PRO GLY GLY TYR ASP ILE MET SEQRES 2 B 151 GLY TYR LEU ILE GLN ILE MET ASN ARG PRO ASN PRO GLN SEQRES 3 B 151 VAL GLU LEU GLY PRO VAL ASP THR SER CSX ALA LEU ILE SEQRES 4 B 151 LEU CYS ASP LEU LYS GLN LYS ASP THR PRO ILE VAL TYR SEQRES 5 B 151 ALA SER GLU ALA PHE LEU TYR MET THR GLY TYR SER ASN SEQRES 6 B 151 ALA GLU VAL LEU GLY ARG ASN CYS ARG PHE LEU GLN SER SEQRES 7 B 151 PRO ASP GLY MET VAL LYS PRO LYS SER THR ARG LYS TYR SEQRES 8 B 151 VAL ASP SER ASN THR ILE ASN THR MET ARG LYS ALA ILE SEQRES 9 B 151 ASP ARG ASN ALA GLU VAL GLN VAL GLU VAL VAL ASN PHE SEQRES 10 B 151 LYS LYS ASN GLY GLN ARG PHE VAL ASN PHE LEU THR MET SEQRES 11 B 151 ILE PRO VAL ARG ASP GLU THR GLY GLU TYR ARG TYR SER SEQRES 12 B 151 MET GLY PHE GLN CYS GLU THR GLU SEQRES 1 C 151 MET HIS THR LEU TYR ALA PRO GLY GLY TYR ASP ILE MET SEQRES 2 C 151 GLY TYR LEU ILE GLN ILE MET ASN ARG PRO ASN PRO GLN SEQRES 3 C 151 VAL GLU LEU GLY PRO VAL ASP THR SER CSX ALA LEU ILE SEQRES 4 C 151 LEU CYS ASP LEU LYS GLN LYS ASP THR PRO ILE VAL TYR SEQRES 5 C 151 ALA SER GLU ALA PHE LEU TYR MET THR GLY TYR SER ASN SEQRES 6 C 151 ALA GLU VAL LEU GLY ARG ASN CYS ARG PHE LEU GLN SER SEQRES 7 C 151 PRO ASP GLY MET VAL LYS PRO LYS SER THR ARG LYS TYR SEQRES 8 C 151 VAL ASP SER ASN THR ILE ASN THR MET ARG LYS ALA ILE SEQRES 9 C 151 ASP ARG ASN ALA GLU VAL GLN VAL GLU VAL VAL ASN PHE SEQRES 10 C 151 LYS LYS ASN GLY GLN ARG PHE VAL ASN PHE LEU THR MET SEQRES 11 C 151 ILE PRO VAL ARG ASP GLU THR GLY GLU TYR ARG TYR SER SEQRES 12 C 151 MET GLY PHE GLN CYS GLU THR GLU SEQRES 1 D 151 MET HIS THR LEU TYR ALA PRO GLY GLY TYR ASP ILE MET SEQRES 2 D 151 GLY TYR LEU ILE GLN ILE MET ASN ARG PRO ASN PRO GLN SEQRES 3 D 151 VAL GLU LEU GLY PRO VAL ASP THR SER CSX ALA LEU ILE SEQRES 4 D 151 LEU CYS ASP LEU LYS GLN LYS ASP THR PRO ILE VAL TYR SEQRES 5 D 151 ALA SER GLU ALA PHE LEU TYR MET THR GLY TYR SER ASN SEQRES 6 D 151 ALA GLU VAL LEU GLY ARG ASN CYS ARG PHE LEU GLN SER SEQRES 7 D 151 PRO ASP GLY MET VAL LYS PRO LYS SER THR ARG LYS TYR SEQRES 8 D 151 VAL ASP SER ASN THR ILE ASN THR MET ARG LYS ALA ILE SEQRES 9 D 151 ASP ARG ASN ALA GLU VAL GLN VAL GLU VAL VAL ASN PHE SEQRES 10 D 151 LYS LYS ASN GLY GLN ARG PHE VAL ASN PHE LEU THR MET SEQRES 11 D 151 ILE PRO VAL ARG ASP GLU THR GLY GLU TYR ARG TYR SER SEQRES 12 D 151 MET GLY PHE GLN CYS GLU THR GLU MODRES 6CNY CSX A 71 CYS MODIFIED RESIDUE MODRES 6CNY CSX B 71 CYS MODIFIED RESIDUE MODRES 6CNY CSX C 71 CYS MODIFIED RESIDUE MODRES 6CNY CSX D 71 CYS MODIFIED RESIDUE HET CSX A 71 7 HET CSX B 71 7 HET CSX C 71 7 HET CSX D 71 7 HET FMN A 201 31 HET FMN B 201 31 HET FMN C 201 31 HET FMN D 201 31 HETNAM CSX S-OXY CYSTEINE HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 1 CSX 4(C3 H7 N O3 S) FORMUL 5 FMN 4(C17 H21 N4 O9 P) FORMUL 9 HOH *477(H2 O) HELIX 1 AA1 ASP A 46 ASN A 56 1 11 HELIX 2 AA2 SER A 89 GLY A 97 1 9 HELIX 3 AA3 SER A 99 LEU A 104 1 6 HELIX 4 AA4 ASN A 107 SER A 113 5 7 HELIX 5 AA5 ASP A 128 ASN A 142 1 15 HELIX 6 AA6 ASP B 46 ASN B 56 1 11 HELIX 7 AA7 SER B 89 GLY B 97 1 9 HELIX 8 AA8 SER B 99 LEU B 104 1 6 HELIX 9 AA9 ASN B 107 SER B 113 5 7 HELIX 10 AB1 ASP B 128 ASN B 142 1 15 HELIX 11 AB2 ASP C 46 ASN C 56 1 11 HELIX 12 AB3 SER C 89 GLY C 97 1 9 HELIX 13 AB4 SER C 99 LEU C 104 1 6 HELIX 14 AB5 ASN C 107 SER C 113 5 7 HELIX 15 AB6 ASP C 128 ASN C 142 1 15 HELIX 16 AB7 ASP D 46 ARG D 57 1 12 HELIX 17 AB8 SER D 89 GLY D 97 1 9 HELIX 18 AB9 SER D 99 LEU D 104 1 6 HELIX 19 AC1 ASN D 107 SER D 113 5 7 HELIX 20 AC2 ASP D 128 ASN D 142 1 15 SHEET 1 AA1 5 ILE A 85 ALA A 88 0 SHEET 2 AA1 5 ALA A 72 ASP A 77 -1 N LEU A 75 O VAL A 86 SHEET 3 AA1 5 TYR A 175 CYS A 183 -1 O SER A 178 N CYS A 76 SHEET 4 AA1 5 ARG A 158 ARG A 169 -1 N PHE A 162 O CYS A 183 SHEET 5 AA1 5 VAL A 145 PHE A 152 -1 N VAL A 149 O ASN A 161 SHEET 1 AA2 5 ILE B 85 ALA B 88 0 SHEET 2 AA2 5 ALA B 72 ASP B 77 -1 N LEU B 75 O VAL B 86 SHEET 3 AA2 5 TYR B 175 CYS B 183 -1 O SER B 178 N CYS B 76 SHEET 4 AA2 5 ARG B 158 ARG B 169 -1 N PHE B 162 O CYS B 183 SHEET 5 AA2 5 VAL B 145 PHE B 152 -1 N VAL B 149 O ASN B 161 SHEET 1 AA3 5 ILE C 85 ALA C 88 0 SHEET 2 AA3 5 ALA C 72 ASP C 77 -1 N LEU C 75 O VAL C 86 SHEET 3 AA3 5 TYR C 175 CYS C 183 -1 O SER C 178 N CYS C 76 SHEET 4 AA3 5 ARG C 158 ARG C 169 -1 N PHE C 162 O CYS C 183 SHEET 5 AA3 5 VAL C 145 PHE C 152 -1 N VAL C 149 O ASN C 161 SHEET 1 AA4 5 ILE D 85 ALA D 88 0 SHEET 2 AA4 5 ALA D 72 ASP D 77 -1 N LEU D 75 O VAL D 86 SHEET 3 AA4 5 TYR D 175 CYS D 183 -1 O SER D 178 N CYS D 76 SHEET 4 AA4 5 ARG D 158 ARG D 169 -1 N PHE D 162 O CYS D 183 SHEET 5 AA4 5 VAL D 145 PHE D 152 -1 N VAL D 149 O ASN D 161 LINK C SER A 70 N CSX A 71 1555 1555 1.35 LINK C CSX A 71 N ALA A 72 1555 1555 1.35 LINK C SER B 70 N CSX B 71 1555 1555 1.34 LINK C CSX B 71 N ALA B 72 1555 1555 1.34 LINK C SER C 70 N CSX C 71 1555 1555 1.35 LINK C CSX C 71 N ALA C 72 1555 1555 1.35 LINK C SER D 70 N CSX D 71 1555 1555 1.34 LINK C CSX D 71 N ALA D 72 1555 1555 1.33 SITE 1 AC1 22 ILE A 74 ASN A 107 CYS A 108 ARG A 109 SITE 2 AC1 22 LEU A 111 GLN A 112 ARG A 124 ILE A 132 SITE 3 AC1 22 ARG A 136 ILE A 139 ASN A 151 ASN A 161 SITE 4 AC1 22 LEU A 163 MET A 165 SER A 178 MET A 179 SITE 5 AC1 22 GLY A 180 GLN A 182 HOH A 331 HOH A 343 SITE 6 AC1 22 HOH A 359 HOH A 393 SITE 1 AC2 22 ILE B 74 CYS B 76 THR B 83 ASN B 107 SITE 2 AC2 22 CYS B 108 ARG B 109 LEU B 111 GLN B 112 SITE 3 AC2 22 ARG B 124 ILE B 132 ARG B 136 ILE B 139 SITE 4 AC2 22 ASN B 151 ASN B 161 LEU B 163 MET B 165 SITE 5 AC2 22 SER B 178 GLY B 180 GLN B 182 HOH B 308 SITE 6 AC2 22 HOH B 313 HOH B 337 SITE 1 AC3 23 ILE C 74 CYS C 76 ASN C 107 CYS C 108 SITE 2 AC3 23 ARG C 109 LEU C 111 GLN C 112 ARG C 124 SITE 3 AC3 23 ILE C 132 ARG C 136 ILE C 139 ASN C 151 SITE 4 AC3 23 ASN C 161 LEU C 163 MET C 165 SER C 178 SITE 5 AC3 23 GLY C 180 GLN C 182 HOH C 306 HOH C 330 SITE 6 AC3 23 HOH C 354 HOH C 372 HOH C 394 SITE 1 AC4 21 ILE D 74 ASN D 107 CYS D 108 ARG D 109 SITE 2 AC4 21 LEU D 111 GLN D 112 ARG D 124 ILE D 132 SITE 3 AC4 21 ARG D 136 ILE D 139 ASN D 151 ASN D 161 SITE 4 AC4 21 LEU D 163 MET D 165 SER D 178 GLY D 180 SITE 5 AC4 21 GLN D 182 HOH D 324 HOH D 329 HOH D 342 SITE 6 AC4 21 HOH D 356 CRYST1 64.120 80.570 64.110 90.00 90.02 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015596 0.000000 0.000005 0.00000 SCALE2 0.000000 0.012412 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015598 0.00000