HEADER LYASE 12-MAR-18 6COD TITLE ATHNL ENANTIOSELECTIVITY MUTANT AT-A9-H7 APO Y13C,Y121L,P126F,L128W, TITLE 2 C131T,F179L,A209I WITH BENZALDEHYDE CAVEAT 6COD RESIDUE A VAL 52 AND RESIDUE A GLU 53 THAT ARE NEXT TO EACH CAVEAT 2 6COD OTHER IN THE SAMPLE SEQUENCE ARE NOT PROPERLY LINKED: CAVEAT 3 6COD DISTANCE BETWEEN C AND N IS 1.17 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-HYDROXYNITRILE LYASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ATHNL; COMPND 5 SYNONYM: ATHNL,(R)-HYDROXYNITRILE LYASE,(R)-OXYNITRILASE, COMPND 6 METHYLESTERASE 5,ATMES5; COMPND 7 EC: 4.1.2.10; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: HNL, MES5, AT5G10300, F18D22_70; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS ALPHA BETA HYDROLASE GLOBULAR HYDROXYNITRILE LYASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR B.J.JONES,R.J.KAZLAUSKAS,R.DESROULEAUX REVDAT 4 04-OCT-23 6COD 1 REMARK REVDAT 3 01-JAN-20 6COD 1 REMARK REVDAT 2 10-APR-19 6COD 1 REMARK REVDAT 1 20-MAR-19 6COD 0 JRNL AUTH B.J.JONES,R.DESROULEAUX,R.J.KAZLAUSKAS JRNL TITL ATHNL ENANTIOSELECTIVITY MUTANTS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 47127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2454 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2968 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 153 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4122 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 286 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.46000 REMARK 3 B22 (A**2) : -0.43000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.110 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.936 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4300 ; 0.029 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4088 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5808 ; 2.539 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9457 ; 1.237 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 526 ; 6.323 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 189 ;33.460 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 763 ;15.061 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;21.194 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 627 ; 0.158 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4794 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 977 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 259 REMARK 3 ORIGIN FOR THE GROUP (A): -7.9239 -2.6159 3.4306 REMARK 3 T TENSOR REMARK 3 T11: 0.0100 T22: 0.0573 REMARK 3 T33: 0.0132 T12: 0.0026 REMARK 3 T13: -0.0059 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 0.9543 L22: 0.4376 REMARK 3 L33: 0.5925 L12: 0.0544 REMARK 3 L13: -0.0090 L23: 0.1296 REMARK 3 S TENSOR REMARK 3 S11: -0.0340 S12: 0.1622 S13: 0.1000 REMARK 3 S21: -0.0543 S22: 0.0011 S23: 0.0171 REMARK 3 S31: -0.0461 S32: -0.0607 S33: 0.0329 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 259 REMARK 3 ORIGIN FOR THE GROUP (A): 9.4991 -7.6431 33.2438 REMARK 3 T TENSOR REMARK 3 T11: 0.0052 T22: 0.0563 REMARK 3 T33: 0.0160 T12: -0.0026 REMARK 3 T13: -0.0048 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 1.0426 L22: 0.4814 REMARK 3 L33: 0.2550 L12: 0.1075 REMARK 3 L13: 0.2458 L23: 0.0060 REMARK 3 S TENSOR REMARK 3 S11: 0.0056 S12: -0.1629 S13: 0.0036 REMARK 3 S21: 0.0371 S22: -0.0053 S23: -0.0296 REMARK 3 S31: 0.0027 S32: -0.0055 S33: -0.0003 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6COD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000231842. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49649 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.46600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDBID 3DQZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS, 16% PEG 3350, PH 6.1, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.88600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.38750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.50100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.38750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.88600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.50100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 260 REMARK 465 LEU B 260 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 538 O HOH B 539 1.89 REMARK 500 O HOH A 540 O HOH A 542 1.94 REMARK 500 O HOH A 496 O HOH A 519 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 38 CD GLU A 38 OE1 -0.096 REMARK 500 ARG A 47 CZ ARG A 47 NH2 -0.107 REMARK 500 VAL A 52 C GLU A 53 N -0.165 REMARK 500 ARG A 157 CZ ARG A 157 NH2 -0.078 REMARK 500 GLU A 165 CD GLU A 165 OE1 0.099 REMARK 500 MET A 172 CG MET A 172 SD 0.157 REMARK 500 GLU B 38 CD GLU B 38 OE1 -0.076 REMARK 500 GLU B 53 CD GLU B 53 OE2 -0.076 REMARK 500 GLU B 182 CG GLU B 182 CD 0.105 REMARK 500 GLU B 182 CD GLU B 182 OE1 0.122 REMARK 500 GLU B 192 CG GLU B 192 CD 0.091 REMARK 500 SER B 205 CB SER B 205 OG -0.081 REMARK 500 TRP B 218 CB TRP B 218 CG -0.119 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 47 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 GLU A 53 C - N - CA ANGL. DEV. = -16.9 DEGREES REMARK 500 LYS A 67 CD - CE - NZ ANGL. DEV. = -20.9 DEGREES REMARK 500 ASP A 92 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 SER A 136 CB - CA - C ANGL. DEV. = -13.8 DEGREES REMARK 500 ARG A 157 NE - CZ - NH1 ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG A 157 NE - CZ - NH2 ANGL. DEV. = -7.4 DEGREES REMARK 500 MET A 172 CG - SD - CE ANGL. DEV. = -31.9 DEGREES REMARK 500 GLU A 192 OE1 - CD - OE2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ARG A 200 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ASP A 232 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG B 33 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 GLU B 38 OE1 - CD - OE2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG B 47 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP B 56 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 MET B 123 CG - SD - CE ANGL. DEV. = 13.3 DEGREES REMARK 500 GLU B 138 CG - CD - OE2 ANGL. DEV. = -12.7 DEGREES REMARK 500 MET B 144 CG - SD - CE ANGL. DEV. = -17.0 DEGREES REMARK 500 ARG B 157 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 MET B 172 CG - SD - CE ANGL. DEV. = -25.6 DEGREES REMARK 500 ARG B 175 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 175 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG B 200 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 2 150.95 -38.70 REMARK 500 CYS A 14 -0.79 74.63 REMARK 500 HIS A 15 -157.70 -123.83 REMARK 500 PRO A 46 48.71 -81.67 REMARK 500 ARG A 47 126.17 -175.32 REMARK 500 SER A 81 -116.61 62.39 REMARK 500 MET A 258 100.94 -37.27 REMARK 500 HIS B 15 -163.80 -122.70 REMARK 500 SER B 81 -119.47 57.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HBX A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HBX B 302 DBREF 6COD A 1 258 UNP Q9LFT6 HNL_ARATH 1 258 DBREF 6COD B 1 258 UNP Q9LFT6 HNL_ARATH 1 258 SEQADV 6COD CYS A 14 UNP Q9LFT6 TYR 14 ENGINEERED MUTATION SEQADV 6COD LEU A 122 UNP Q9LFT6 TYR 122 ENGINEERED MUTATION SEQADV 6COD PHE A 126 UNP Q9LFT6 PRO 126 ENGINEERED MUTATION SEQADV 6COD TRP A 129 UNP Q9LFT6 LEU 129 ENGINEERED MUTATION SEQADV 6COD THR A 132 UNP Q9LFT6 CYS 132 ENGINEERED MUTATION SEQADV 6COD ILE A 210 UNP Q9LFT6 ALA 210 ENGINEERED MUTATION SEQADV 6COD GLY A 259 UNP Q9LFT6 EXPRESSION TAG SEQADV 6COD LEU A 260 UNP Q9LFT6 EXPRESSION TAG SEQADV 6COD CYS B 14 UNP Q9LFT6 TYR 14 ENGINEERED MUTATION SEQADV 6COD LEU B 122 UNP Q9LFT6 TYR 122 ENGINEERED MUTATION SEQADV 6COD PHE B 126 UNP Q9LFT6 PRO 126 ENGINEERED MUTATION SEQADV 6COD TRP B 129 UNP Q9LFT6 LEU 129 ENGINEERED MUTATION SEQADV 6COD THR B 132 UNP Q9LFT6 CYS 132 ENGINEERED MUTATION SEQADV 6COD ILE B 210 UNP Q9LFT6 ALA 210 ENGINEERED MUTATION SEQADV 6COD GLY B 259 UNP Q9LFT6 EXPRESSION TAG SEQADV 6COD LEU B 260 UNP Q9LFT6 EXPRESSION TAG SEQRES 1 A 260 MET GLU ARG LYS HIS HIS PHE VAL LEU VAL HIS ASN ALA SEQRES 2 A 260 CYS HIS GLY ALA TRP ILE TRP TYR LYS LEU LYS PRO LEU SEQRES 3 A 260 LEU GLU SER ALA GLY HIS ARG VAL THR ALA VAL GLU LEU SEQRES 4 A 260 ALA ALA SER GLY ILE ASP PRO ARG PRO ILE GLN ALA VAL SEQRES 5 A 260 GLU THR VAL ASP GLU TYR SER LYS PRO LEU ILE GLU THR SEQRES 6 A 260 LEU LYS SER LEU PRO GLU ASN GLU GLU VAL ILE LEU VAL SEQRES 7 A 260 GLY PHE SER PHE GLY GLY ILE ASN ILE ALA LEU ALA ALA SEQRES 8 A 260 ASP ILE PHE PRO ALA LYS ILE LYS VAL LEU VAL PHE LEU SEQRES 9 A 260 ASN ALA PHE LEU PRO ASP THR THR HIS VAL PRO SER HIS SEQRES 10 A 260 VAL LEU ASP LYS LEU MET GLU MET PHE GLY GLY TRP GLY SEQRES 11 A 260 ASP THR GLU PHE SER SER HIS GLU THR ARG ASN GLY THR SEQRES 12 A 260 MET SER LEU LEU LYS MET GLY PRO LYS PHE MET LYS ALA SEQRES 13 A 260 ARG LEU TYR GLN ASN CYS PRO ILE GLU ASP TYR GLU LEU SEQRES 14 A 260 ALA LYS MET LEU HIS ARG GLN GLY SER PHE PHE THR GLU SEQRES 15 A 260 ASP LEU SER LYS LYS GLU LYS PHE SER GLU GLU GLY TYR SEQRES 16 A 260 GLY SER VAL GLN ARG VAL TYR VAL MET SER SER GLU ASP SEQRES 17 A 260 LYS ILE ILE PRO CYS ASP PHE ILE ARG TRP MET ILE ASP SEQRES 18 A 260 ASN PHE ASN VAL SER LYS VAL TYR GLU ILE ASP GLY GLY SEQRES 19 A 260 ASP HIS MET VAL MET LEU SER LYS PRO GLN LYS LEU PHE SEQRES 20 A 260 ASP SER LEU SER ALA ILE ALA THR ASP TYR MET GLY LEU SEQRES 1 B 260 MET GLU ARG LYS HIS HIS PHE VAL LEU VAL HIS ASN ALA SEQRES 2 B 260 CYS HIS GLY ALA TRP ILE TRP TYR LYS LEU LYS PRO LEU SEQRES 3 B 260 LEU GLU SER ALA GLY HIS ARG VAL THR ALA VAL GLU LEU SEQRES 4 B 260 ALA ALA SER GLY ILE ASP PRO ARG PRO ILE GLN ALA VAL SEQRES 5 B 260 GLU THR VAL ASP GLU TYR SER LYS PRO LEU ILE GLU THR SEQRES 6 B 260 LEU LYS SER LEU PRO GLU ASN GLU GLU VAL ILE LEU VAL SEQRES 7 B 260 GLY PHE SER PHE GLY GLY ILE ASN ILE ALA LEU ALA ALA SEQRES 8 B 260 ASP ILE PHE PRO ALA LYS ILE LYS VAL LEU VAL PHE LEU SEQRES 9 B 260 ASN ALA PHE LEU PRO ASP THR THR HIS VAL PRO SER HIS SEQRES 10 B 260 VAL LEU ASP LYS LEU MET GLU MET PHE GLY GLY TRP GLY SEQRES 11 B 260 ASP THR GLU PHE SER SER HIS GLU THR ARG ASN GLY THR SEQRES 12 B 260 MET SER LEU LEU LYS MET GLY PRO LYS PHE MET LYS ALA SEQRES 13 B 260 ARG LEU TYR GLN ASN CYS PRO ILE GLU ASP TYR GLU LEU SEQRES 14 B 260 ALA LYS MET LEU HIS ARG GLN GLY SER PHE PHE THR GLU SEQRES 15 B 260 ASP LEU SER LYS LYS GLU LYS PHE SER GLU GLU GLY TYR SEQRES 16 B 260 GLY SER VAL GLN ARG VAL TYR VAL MET SER SER GLU ASP SEQRES 17 B 260 LYS ILE ILE PRO CYS ASP PHE ILE ARG TRP MET ILE ASP SEQRES 18 B 260 ASN PHE ASN VAL SER LYS VAL TYR GLU ILE ASP GLY GLY SEQRES 19 B 260 ASP HIS MET VAL MET LEU SER LYS PRO GLN LYS LEU PHE SEQRES 20 B 260 ASP SER LEU SER ALA ILE ALA THR ASP TYR MET GLY LEU HET GOL A 301 6 HET GOL A 302 6 HET CL A 303 1 HET HBX A 304 8 HET CL B 301 1 HET HBX B 302 8 HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM HBX BENZALDEHYDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 CL 2(CL 1-) FORMUL 6 HBX 2(C7 H6 O) FORMUL 9 HOH *286(H2 O) HELIX 1 AA1 GLY A 16 TYR A 21 5 6 HELIX 2 AA2 LYS A 22 ALA A 30 1 9 HELIX 3 AA3 PRO A 48 VAL A 52 5 5 HELIX 4 AA4 THR A 54 SER A 68 1 15 HELIX 5 AA5 PHE A 82 PHE A 94 1 13 HELIX 6 AA6 SER A 116 PHE A 126 1 11 HELIX 7 AA7 GLY A 150 LEU A 158 1 9 HELIX 8 AA8 PRO A 163 HIS A 174 1 12 HELIX 9 AA9 PHE A 180 LYS A 187 1 8 HELIX 10 AB1 GLY A 194 VAL A 198 5 5 HELIX 11 AB2 PRO A 212 PHE A 223 1 12 HELIX 12 AB3 MET A 237 LYS A 242 1 6 HELIX 13 AB4 LYS A 242 TYR A 257 1 16 HELIX 14 AB5 GLY B 16 TYR B 21 5 6 HELIX 15 AB6 LYS B 22 ALA B 30 1 9 HELIX 16 AB7 PRO B 48 VAL B 52 5 5 HELIX 17 AB8 THR B 54 SER B 68 1 15 HELIX 18 AB9 PHE B 82 PHE B 94 1 13 HELIX 19 AC1 SER B 116 GLU B 124 1 9 HELIX 20 AC2 GLY B 150 LEU B 158 1 9 HELIX 21 AC3 PRO B 163 HIS B 174 1 12 HELIX 22 AC4 PHE B 180 LYS B 186 1 7 HELIX 23 AC5 GLY B 194 VAL B 198 5 5 HELIX 24 AC6 PRO B 212 PHE B 223 1 12 HELIX 25 AC7 MET B 237 LYS B 242 1 6 HELIX 26 AC8 LYS B 242 TYR B 257 1 16 SHEET 1 AA1 6 ARG A 33 VAL A 37 0 SHEET 2 AA1 6 HIS A 6 VAL A 10 1 N PHE A 7 O ARG A 33 SHEET 3 AA1 6 VAL A 75 PHE A 80 1 O VAL A 78 N VAL A 8 SHEET 4 AA1 6 ILE A 98 LEU A 104 1 O LEU A 104 N GLY A 79 SHEET 5 AA1 6 ARG A 200 SER A 205 1 O VAL A 203 N PHE A 103 SHEET 6 AA1 6 VAL A 228 ILE A 231 1 O ILE A 231 N MET A 204 SHEET 1 AA2 2 GLU A 133 THR A 139 0 SHEET 2 AA2 2 GLY A 142 LYS A 148 -1 O LEU A 146 N SER A 135 SHEET 1 AA3 6 ARG B 33 ALA B 36 0 SHEET 2 AA3 6 HIS B 6 VAL B 10 1 N PHE B 7 O ARG B 33 SHEET 3 AA3 6 VAL B 75 PHE B 80 1 O ILE B 76 N VAL B 8 SHEET 4 AA3 6 ILE B 98 LEU B 104 1 O VAL B 102 N LEU B 77 SHEET 5 AA3 6 ARG B 200 SER B 205 1 O VAL B 203 N PHE B 103 SHEET 6 AA3 6 VAL B 228 ILE B 231 1 O ILE B 231 N MET B 204 SHEET 1 AA4 2 GLU B 133 THR B 139 0 SHEET 2 AA4 2 GLY B 142 LYS B 148 -1 O MET B 144 N HIS B 137 SITE 1 AC1 7 GLU A 53 ASN A 141 MET A 144 ASP A 183 SITE 2 AC1 7 LYS A 186 HOH A 413 HOH A 478 SITE 1 AC2 5 GLY A 128 GLY A 130 LYS A 152 PHE A 153 SITE 2 AC2 5 ARG A 157 SITE 1 AC3 5 ASN A 12 ALA A 13 SER A 81 PHE A 82 SITE 2 AC3 5 HBX A 304 SITE 1 AC4 7 ASN A 12 ALA A 13 SER A 81 TRP A 129 SITE 2 AC4 7 LEU A 147 HIS A 236 CL A 303 SITE 1 AC5 5 ASN B 12 ALA B 13 SER B 81 PHE B 82 SITE 2 AC5 5 HBX B 302 SITE 1 AC6 7 ASN B 12 ALA B 13 SER B 81 TRP B 129 SITE 2 AC6 7 MET B 149 HIS B 236 CL B 301 CRYST1 49.772 87.002 122.775 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020092 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011494 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008145 0.00000