HEADER OXIDOREDUCTASE 16-MAR-18 6CR0 TITLE 1.55 A RESOLUTION STRUCTURE OF (S)-6-HYDROXYNICOTINE OXIDASE FROM TITLE 2 SHINELLA HZN7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: (S)-6-HYDROXYNICOTINE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.5.3.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHINELLA SP. HZN7; SOURCE 3 ORGANISM_TAXID: 879274; SOURCE 4 GENE: NCTB, SHN_30305; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTBSG KEYWDS AMINE OXIDASE, FAD BINDING, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.DEAY III,S.LOVELL,K.P.BATTAILE,P.PETILLO,M.RICHTER REVDAT 5 03-APR-24 6CR0 1 REMARK REVDAT 4 26-JAN-22 6CR0 1 JRNL LINK REVDAT 3 11-DEC-19 6CR0 1 REMARK REVDAT 2 20-FEB-19 6CR0 1 REMARK REVDAT 1 28-MAR-18 6CR0 0 JRNL AUTH D.O.DEAY,S.SEIBOLD,K.P.BATTAILE,S.LOVELL,M.L.RICHTER, JRNL AUTH 2 P.A.PETILLO JRNL TITL IMPROVING THE KINETIC PARAMETERS OF NICOTINE OXIDIZING JRNL TITL 2 ENZYMES BY HOMOLOGOUS STRUCTURE COMPARISON AND RATIONAL JRNL TITL 3 DESIGN JRNL REF ARCH.BIOCHEM.BIOPHYS. 09122 2022 JRNL REFN ESSN 1096-0384 JRNL DOI 10.1016/J.ABB.2022.109122 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3080 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 61404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3082 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.5222 - 4.3348 1.00 2851 114 0.1482 0.2029 REMARK 3 2 4.3348 - 3.4420 1.00 2701 138 0.1234 0.1359 REMARK 3 3 3.4420 - 3.0073 1.00 2712 134 0.1395 0.1708 REMARK 3 4 3.0073 - 2.7325 1.00 2697 145 0.1422 0.1897 REMARK 3 5 2.7325 - 2.5368 1.00 2659 112 0.1434 0.2163 REMARK 3 6 2.5368 - 2.3873 1.00 2643 187 0.1408 0.1851 REMARK 3 7 2.3873 - 2.2677 1.00 2650 138 0.1377 0.1634 REMARK 3 8 2.2677 - 2.1690 1.00 2638 136 0.1410 0.1732 REMARK 3 9 2.1690 - 2.0856 1.00 2679 143 0.1465 0.1887 REMARK 3 10 2.0856 - 2.0136 1.00 2635 150 0.1552 0.1852 REMARK 3 11 2.0136 - 1.9507 1.00 2629 147 0.1542 0.1732 REMARK 3 12 1.9507 - 1.8949 1.00 2592 160 0.1681 0.2307 REMARK 3 13 1.8949 - 1.8450 1.00 2668 141 0.1657 0.1936 REMARK 3 14 1.8450 - 1.8000 1.00 2599 154 0.1795 0.1998 REMARK 3 15 1.8000 - 1.7591 1.00 2677 104 0.1804 0.2075 REMARK 3 16 1.7591 - 1.7217 1.00 2599 147 0.1875 0.2017 REMARK 3 17 1.7217 - 1.6872 1.00 2626 128 0.1920 0.2459 REMARK 3 18 1.6872 - 1.6554 1.00 2659 151 0.1924 0.2106 REMARK 3 19 1.6554 - 1.6258 1.00 2633 132 0.2042 0.2342 REMARK 3 20 1.6258 - 1.5983 1.00 2594 166 0.2165 0.2604 REMARK 3 21 1.5983 - 1.5725 1.00 2595 135 0.2278 0.2730 REMARK 3 22 1.5725 - 1.5483 0.97 2586 120 0.2397 0.2346 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 76.8751 75.3623 93.6781 REMARK 3 T TENSOR REMARK 3 T11: 0.1649 T22: 0.2894 REMARK 3 T33: 0.2999 T12: 0.0305 REMARK 3 T13: -0.0140 T23: -0.1372 REMARK 3 L TENSOR REMARK 3 L11: 0.1706 L22: 0.0357 REMARK 3 L33: 0.1897 L12: 0.0842 REMARK 3 L13: -0.0746 L23: -0.0111 REMARK 3 S TENSOR REMARK 3 S11: 0.0099 S12: -0.0251 S13: -0.0633 REMARK 3 S21: 0.0210 S22: -0.2092 S23: 0.2183 REMARK 3 S31: 0.1135 S32: -0.2185 S33: -0.2202 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 101.4761 83.7785 89.4066 REMARK 3 T TENSOR REMARK 3 T11: 0.2382 T22: 0.1564 REMARK 3 T33: 0.1865 T12: 0.0109 REMARK 3 T13: 0.0333 T23: 0.0219 REMARK 3 L TENSOR REMARK 3 L11: 0.0911 L22: 0.1162 REMARK 3 L33: 0.1271 L12: 0.1040 REMARK 3 L13: 0.0980 L23: 0.1275 REMARK 3 S TENSOR REMARK 3 S11: -0.0071 S12: -0.0067 S13: -0.0091 REMARK 3 S21: -0.1625 S22: -0.0155 S23: -0.1107 REMARK 3 S31: -0.2084 S32: 0.0684 S33: -0.0093 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): 69.3231 83.5668 85.7362 REMARK 3 T TENSOR REMARK 3 T11: 0.2690 T22: 0.4439 REMARK 3 T33: 0.4152 T12: 0.1537 REMARK 3 T13: -0.1626 T23: -0.2217 REMARK 3 L TENSOR REMARK 3 L11: 0.0651 L22: 0.1593 REMARK 3 L33: 0.2101 L12: 0.0217 REMARK 3 L13: -0.0521 L23: -0.1443 REMARK 3 S TENSOR REMARK 3 S11: -0.0435 S12: 0.0334 S13: 0.0333 REMARK 3 S21: -0.1096 S22: -0.2355 S23: 0.2687 REMARK 3 S31: -0.0911 S32: -0.3442 S33: -0.7725 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 276 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 85.1580 82.3617 78.5394 REMARK 3 T TENSOR REMARK 3 T11: 0.3717 T22: 0.2020 REMARK 3 T33: 0.1823 T12: 0.1201 REMARK 3 T13: -0.0944 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 0.3380 L22: 0.2280 REMARK 3 L33: 0.0701 L12: -0.0664 REMARK 3 L13: -0.0966 L23: -0.0742 REMARK 3 S TENSOR REMARK 3 S11: -0.0430 S12: 0.0073 S13: 0.0369 REMARK 3 S21: -0.0731 S22: -0.0791 S23: 0.0366 REMARK 3 S31: -0.1896 S32: -0.1993 S33: -0.1480 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 344 ) REMARK 3 ORIGIN FOR THE GROUP (A): 94.5777 64.1135 80.7362 REMARK 3 T TENSOR REMARK 3 T11: 0.2389 T22: 0.1585 REMARK 3 T33: 0.1730 T12: 0.0150 REMARK 3 T13: 0.0122 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.0136 L22: 0.0547 REMARK 3 L33: 0.0582 L12: -0.0256 REMARK 3 L13: -0.0127 L23: 0.0566 REMARK 3 S TENSOR REMARK 3 S11: 0.0502 S12: 0.0282 S13: -0.0131 REMARK 3 S21: -0.0937 S22: -0.0704 S23: -0.0455 REMARK 3 S31: 0.0015 S32: -0.0095 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 345 THROUGH 371 ) REMARK 3 ORIGIN FOR THE GROUP (A): 91.8925 62.3080 74.6667 REMARK 3 T TENSOR REMARK 3 T11: 0.2310 T22: 0.2116 REMARK 3 T33: 0.1933 T12: 0.0422 REMARK 3 T13: -0.0156 T23: -0.0399 REMARK 3 L TENSOR REMARK 3 L11: 0.0046 L22: 0.0082 REMARK 3 L33: 0.0220 L12: 0.0008 REMARK 3 L13: 0.0081 L23: 0.0104 REMARK 3 S TENSOR REMARK 3 S11: -0.0172 S12: 0.0297 S13: -0.0115 REMARK 3 S21: -0.0963 S22: -0.1149 S23: -0.0267 REMARK 3 S31: -0.0607 S32: -0.0203 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 372 THROUGH 394 ) REMARK 3 ORIGIN FOR THE GROUP (A): 84.5845 88.9794 81.8525 REMARK 3 T TENSOR REMARK 3 T11: 0.3724 T22: 0.2256 REMARK 3 T33: 0.2326 T12: 0.0899 REMARK 3 T13: -0.0687 T23: -0.0312 REMARK 3 L TENSOR REMARK 3 L11: 0.0115 L22: 0.0079 REMARK 3 L33: 0.0047 L12: -0.0043 REMARK 3 L13: 0.0071 L23: -0.0062 REMARK 3 S TENSOR REMARK 3 S11: 0.0150 S12: 0.0763 S13: -0.0452 REMARK 3 S21: -0.1062 S22: -0.0728 S23: 0.0713 REMARK 3 S31: -0.1623 S32: -0.1345 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 395 THROUGH 434 ) REMARK 3 ORIGIN FOR THE GROUP (A): 75.7739 91.4901 92.9205 REMARK 3 T TENSOR REMARK 3 T11: 0.2427 T22: 0.2937 REMARK 3 T33: 0.2954 T12: 0.1281 REMARK 3 T13: -0.0978 T23: -0.1406 REMARK 3 L TENSOR REMARK 3 L11: 0.1109 L22: 0.1402 REMARK 3 L33: 0.1457 L12: 0.0995 REMARK 3 L13: -0.1164 L23: -0.1397 REMARK 3 S TENSOR REMARK 3 S11: -0.0371 S12: -0.0586 S13: 0.0587 REMARK 3 S21: -0.1358 S22: -0.1906 S23: 0.2062 REMARK 3 S31: -0.1653 S32: -0.2593 S33: -0.3236 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS SOLVED BY SAD PHASING REMARK 3 USING PT SOAKED CRYSTALS. THE RESULTING INITIAL MODEL WAS USED REMARK 3 FOR MOLECULAR REPLACEMENT AGAINST THE NATIVE WHICH PRODUCED THE REMARK 3 FINAL STRUCTURE. REMARK 4 REMARK 4 6CR0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000233251. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61448 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.548 REMARK 200 RESOLUTION RANGE LOW (A) : 48.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 1.34900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: CRANK2 SAD SOLUTION REMARK 200 REMARK 200 REMARK: PRISM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M CALCIUM ACETATE, 0.1 M SODIUM REMARK 280 CACODYLATE, 25 % (V/V) MPD, PH 6.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.20933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.41867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.41867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.20933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 858 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 4 REMARK 465 ALA A 435 REMARK 465 THR A 436 REMARK 465 ALA A 437 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 5 CG1 CG2 CD1 REMARK 470 ARG A 29 CD NE CZ NH1 NH2 REMARK 470 LYS A 80 CE NZ REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 GLN A 98 CG CD OE1 NE2 REMARK 470 ARG A 222 CD NE CZ NH1 NH2 REMARK 470 GLU A 232 CG CD OE1 OE2 REMARK 470 ASP A 238 CG OD1 OD2 REMARK 470 ASN A 239 CG OD1 ND2 REMARK 470 ARG A 252 NE CZ NH1 NH2 REMARK 470 ASP A 267 CG OD1 OD2 REMARK 470 ARG A 269 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 271 CG CD OE1 OE2 REMARK 470 GLU A 283 CG CD OE1 OE2 REMARK 470 GLU A 373 CD OE1 OE2 REMARK 470 ARG A 389 NE CZ NH1 NH2 REMARK 470 LYS A 434 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 826 O HOH A 870 2.16 REMARK 500 OE1 GLU A 137 O HOH A 601 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 59 -14.02 -153.83 REMARK 500 ALA A 190 43.63 -81.72 REMARK 500 MET A 287 -10.76 -162.87 REMARK 500 ALA A 375 -64.38 -124.23 REMARK 500 ARG A 376 -27.26 70.02 REMARK 500 ASN A 398 -101.98 57.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 86 O REMARK 620 2 ASP A 86 OD1 74.2 REMARK 620 3 ASP A 88 OD1 77.2 139.1 REMARK 620 4 HOH A 640 O 102.7 78.2 80.4 REMARK 620 5 HOH A 697 O 133.3 70.5 147.7 98.9 REMARK 620 6 HOH A 748 O 148.9 136.4 73.5 82.6 74.4 REMARK 620 7 HOH A 829 O 79.8 107.2 95.6 174.6 82.5 92.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A 192 O REMARK 620 2 HOH A 653 O 91.2 REMARK 620 3 HOH A 677 O 90.4 80.7 REMARK 620 4 HOH A 688 O 90.6 77.6 158.3 REMARK 620 5 HOH A 840 O 169.4 84.8 79.3 98.1 REMARK 620 6 HOH A 843 O 99.2 153.6 123.1 78.0 88.5 REMARK 620 7 HOH A 845 O 82.1 151.0 71.2 130.3 96.7 55.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 507 DBREF1 6CR0 A 1 437 UNP A0A075BSX9_9RHIZ DBREF2 6CR0 A A0A075BSX9 1 437 SEQADV 6CR0 SER A -2 UNP A0A075BSX EXPRESSION TAG SEQADV 6CR0 ASN A -1 UNP A0A075BSX EXPRESSION TAG SEQADV 6CR0 ALA A 0 UNP A0A075BSX EXPRESSION TAG SEQRES 1 A 440 SER ASN ALA MET THR GLU LYS ILE TYR ASP ALA ILE VAL SEQRES 2 A 440 VAL GLY ALA GLY PHE SER GLY LEU VAL ALA ALA ARG GLU SEQRES 3 A 440 LEU SER ALA GLN GLY ARG SER VAL LEU ILE ILE GLU ALA SEQRES 4 A 440 ARG HIS ARG LEU GLY GLY ARG THR HIS VAL VAL ASN PHE SEQRES 5 A 440 LEU GLY ARG PRO VAL GLU ILE GLY GLY ALA GLY VAL HIS SEQRES 6 A 440 TRP CYS GLN PRO HIS VAL PHE ALA GLU MET GLN ARG TYR SEQRES 7 A 440 GLY PHE GLY PHE LYS GLU ALA PRO LEU ALA ASP LEU ASP SEQRES 8 A 440 LYS ALA TYR MET VAL PHE ALA ASP GLY GLN LYS ILE ASP SEQRES 9 A 440 VAL PRO PRO ALA THR PHE ASP GLU GLU TYR THR THR ALA SEQRES 10 A 440 PHE GLU LYS PHE CYS SER ARG SER ARG GLU LEU PHE PRO SEQRES 11 A 440 ARG PRO TYR SER PRO LEU ASP ASN HIS GLU VAL SER ASN SEQRES 12 A 440 LEU ASP GLY VAL SER ALA ARG ASP HIS LEU GLU SER LEU SEQRES 13 A 440 GLY LEU ASN GLU LEU GLN LEU ALA SER MET ASN ALA GLU SEQRES 14 A 440 LEU THR LEU TYR GLY GLY ALA PRO THR THR GLU LEU SER SEQRES 15 A 440 TYR PRO SER PHE VAL LYS PHE HIS ALA LEU ALA SER TRP SEQRES 16 A 440 ASP THR ILE THR PHE THR ASP SER GLU LYS ARG TYR HIS SEQRES 17 A 440 VAL GLN GLY GLY THR ASN ALA LEU CYS GLN ALA ILE PHE SEQRES 18 A 440 ASP ASP CYS ARG ALA ASP SER GLU PHE GLY VAL PRO VAL SEQRES 19 A 440 GLU ALA VAL ALA GLN THR ASP ASN GLY VAL THR VAL THR SEQRES 20 A 440 LEU ALA ASP LYS ARG VAL PHE ARG ALA LEU THR CYS VAL SEQRES 21 A 440 LEU THR LEU PRO THR LYS VAL TYR ALA ASP VAL ARG PHE SEQRES 22 A 440 GLU PRO PRO LEU PRO PRO GLU LYS ARG ALA PHE ILE GLU SEQRES 23 A 440 HIS ALA GLU MET ALA ASP GLY ALA GLU LEU TYR VAL HIS SEQRES 24 A 440 VAL ARG GLN ASN LEU GLY ASN THR PHE THR PHE CYS ASP SEQRES 25 A 440 ASP PRO ASN PRO PHE ASN ALA VAL GLN THR TYR ALA TYR SEQRES 26 A 440 ASP ASP GLU LEU GLY THR ILE LEU LYS ILE THR ILE GLY SEQRES 27 A 440 ARG GLN SER LEU ILE ASN LEU GLU ASN PHE ASP ALA ILE SEQRES 28 A 440 ALA ALA GLU ILE ARG LYS ILE HIS GLY ASP VAL GLU VAL SEQRES 29 A 440 LEU GLU ALA LEU PRO TYR ASN TRP ALA MET ASP GLU TYR SEQRES 30 A 440 ALA ARG THR SER TYR PRO ALA MET ARG LYS GLY TRP PHE SEQRES 31 A 440 SER ARG TYR LYS ASP MET ALA LYS PRO GLU ASN ARG LEU SEQRES 32 A 440 PHE PHE ALA GLY SER ALA THR ALA ASP GLY TRP HIS GLU SEQRES 33 A 440 TYR ILE ASP GLY ALA ILE GLU SER GLY ILE ARG VAL GLY SEQRES 34 A 440 ARG GLU ILE ARG HIS PHE MET LYS ALA THR ALA HET CA A 501 1 HET CA A 502 1 HET MPD A 503 8 HET MPD A 504 8 HET MPD A 505 8 HET ACT A 506 4 HET FAD A 507 53 HETNAM CA CALCIUM ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM ACT ACETATE ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 2 CA 2(CA 2+) FORMUL 4 MPD 3(C6 H14 O2) FORMUL 7 ACT C2 H3 O2 1- FORMUL 8 FAD C27 H33 N9 O15 P2 FORMUL 9 HOH *276(H2 O) HELIX 1 AA1 GLY A 14 GLN A 27 1 14 HELIX 2 AA2 GLN A 65 GLY A 76 1 12 HELIX 3 AA3 PRO A 103 CYS A 119 1 17 HELIX 4 AA4 ARG A 121 PHE A 126 1 6 HELIX 5 AA5 HIS A 136 ASP A 142 1 7 HELIX 6 AA6 SER A 145 GLU A 151 1 7 HELIX 7 AA7 ASN A 156 GLY A 172 1 17 HELIX 8 AA8 SER A 179 ALA A 190 1 12 HELIX 9 AA9 ASP A 193 GLU A 201 1 9 HELIX 10 AB1 GLY A 209 ASP A 220 1 12 HELIX 11 AB2 PRO A 261 VAL A 268 5 8 HELIX 12 AB3 PRO A 275 ALA A 285 1 11 HELIX 13 AB4 ARG A 336 ILE A 340 5 5 HELIX 14 AB5 ASN A 344 GLY A 357 1 14 HELIX 15 AB6 ASN A 368 ASP A 372 5 5 HELIX 16 AB7 TRP A 386 SER A 388 5 3 HELIX 17 AB8 ARG A 389 LYS A 395 1 7 HELIX 18 AB9 GLY A 404 ALA A 408 5 5 HELIX 19 AC1 TYR A 414 LYS A 434 1 21 SHEET 1 AA1 7 ALA A 223 PHE A 227 0 SHEET 2 AA1 7 VAL A 31 GLU A 35 1 N ILE A 33 O ASP A 224 SHEET 3 AA1 7 TYR A 6 VAL A 11 1 N VAL A 10 O LEU A 32 SHEET 4 AA1 7 VAL A 250 LEU A 258 1 O VAL A 257 N VAL A 11 SHEET 5 AA1 7 VAL A 241 LEU A 245 -1 N VAL A 243 O PHE A 251 SHEET 6 AA1 7 VAL A 231 GLN A 236 -1 N ALA A 235 O THR A 242 SHEET 7 AA1 7 ARG A 269 GLU A 271 1 O ARG A 269 N VAL A 234 SHEET 1 AA2 5 ALA A 223 PHE A 227 0 SHEET 2 AA2 5 VAL A 31 GLU A 35 1 N ILE A 33 O ASP A 224 SHEET 3 AA2 5 TYR A 6 VAL A 11 1 N VAL A 10 O LEU A 32 SHEET 4 AA2 5 VAL A 250 LEU A 258 1 O VAL A 257 N VAL A 11 SHEET 5 AA2 5 LEU A 400 PHE A 402 1 O PHE A 401 N LEU A 258 SHEET 1 AA3 2 VAL A 46 PHE A 49 0 SHEET 2 AA3 2 ARG A 52 GLU A 55 -1 O VAL A 54 N VAL A 47 SHEET 1 AA4 2 PHE A 79 GLU A 81 0 SHEET 2 AA4 2 TYR A 204 VAL A 206 -1 O HIS A 205 N LYS A 80 SHEET 1 AA5 7 LYS A 99 VAL A 102 0 SHEET 2 AA5 7 LYS A 89 VAL A 93 -1 N ALA A 90 O VAL A 102 SHEET 3 AA5 7 THR A 304 CYS A 308 1 O PHE A 307 N VAL A 93 SHEET 4 AA5 7 ALA A 316 ASP A 323 -1 O VAL A 317 N THR A 306 SHEET 5 AA5 7 GLY A 327 ILE A 334 -1 O LYS A 331 N GLN A 318 SHEET 6 AA5 7 ALA A 291 VAL A 297 -1 N LEU A 293 O ILE A 332 SHEET 7 AA5 7 VAL A 361 TYR A 367 -1 O TYR A 367 N GLU A 292 LINK O ASP A 86 CA CA A 501 1555 1555 2.54 LINK OD1 ASP A 86 CA CA A 501 1555 1555 2.45 LINK OD1 ASP A 88 CA CA A 501 1555 1555 2.31 LINK O TRP A 192 CA CA A 502 1555 1555 2.31 LINK CA CA A 501 O HOH A 640 1555 1555 2.39 LINK CA CA A 501 O HOH A 697 1555 1555 2.32 LINK CA CA A 501 O HOH A 748 1555 1555 2.43 LINK CA CA A 501 O HOH A 829 1555 1555 2.29 LINK CA CA A 502 O HOH A 653 1555 1555 2.61 LINK CA CA A 502 O HOH A 677 1555 1555 2.37 LINK CA CA A 502 O HOH A 688 1555 1555 2.47 LINK CA CA A 502 O HOH A 840 1555 1555 2.38 LINK CA CA A 502 O HOH A 843 1555 1555 2.27 LINK CA CA A 502 O HOH A 845 1555 1555 3.19 CISPEP 1 GLU A 271 PRO A 272 0 -7.11 CISPEP 2 ASP A 310 PRO A 311 0 4.48 SITE 1 AC1 6 ASP A 86 ASP A 88 HOH A 640 HOH A 697 SITE 2 AC1 6 HOH A 748 HOH A 829 SITE 1 AC2 6 TRP A 192 HOH A 653 HOH A 677 HOH A 688 SITE 2 AC2 6 HOH A 840 HOH A 843 SITE 1 AC3 4 ASP A 108 TYR A 111 LYS A 202 HOH A 756 SITE 1 AC4 4 GLU A 166 GLU A 201 LYS A 202 PHE A 307 SITE 1 AC5 6 TYR A 170 TYR A 379 GLU A 413 TYR A 414 SITE 2 AC5 6 FAD A 507 HOH A 678 SITE 1 AC6 3 HIS A 205 TYR A 320 HOH A 637 SITE 1 AC7 39 VAL A 11 GLY A 12 PHE A 15 SER A 16 SITE 2 AC7 39 GLU A 35 ALA A 36D ARG A 37 GLY A 41 SITE 3 AC7 39 GLY A 42 ARG A 43 THR A 44 GLY A 58 SITE 4 AC7 39 ALA A 59 GLY A 60 PRO A 230 VAL A 231 SITE 5 AC7 39 THR A 259 LEU A 260 PRO A 261 VAL A 264 SITE 6 AC7 39 TRP A 369 TYR A 374 SER A 378 GLY A 404 SITE 7 AC7 39 SER A 405 GLU A 413 TYR A 414 ILE A 415 SITE 8 AC7 39 ALA A 418 MPD A 505 HOH A 673 HOH A 676 SITE 9 AC7 39 HOH A 702 HOH A 712 HOH A 722 HOH A 725 SITE 10 AC7 39 HOH A 746 HOH A 775 HOH A 785 CRYST1 96.282 96.282 78.628 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010386 0.005996 0.000000 0.00000 SCALE2 0.000000 0.011993 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012718 0.00000