HEADER VIRUS 27-MAR-18 6CVB TITLE CRYOEM STRUCTURE OF HUMAN ENTEROVIRUS D68 IN COMPLEX WITH 6'-SIALYL-N- TITLE 2 ACETYLLACTOSAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIRAL PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 565-861; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: VIRAL PROTEIN 3; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: UNP RESIDUES 1-247; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: VIRAL PROTEIN 2; COMPND 11 CHAIN: C; COMPND 12 FRAGMENT: UNP RESIDUES 1-248; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: VIRAL PROTEIN 4; COMPND 15 CHAIN: D; COMPND 16 FRAGMENT: UNP RESIDUES 2-69 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROVIRUS D68; SOURCE 3 ORGANISM_TAXID: 42789; SOURCE 4 STRAIN: 947; SOURCE 5 CELL_LINE: RHABDOMYOSARCOMA; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: ENTEROVIRUS D68; SOURCE 8 ORGANISM_TAXID: 42789; SOURCE 9 STRAIN: 947; SOURCE 10 CELL_LINE: RHABDOMYOSARCOMA; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: ENTEROVIRUS D68; SOURCE 13 ORGANISM_TAXID: 42789; SOURCE 14 STRAIN: 947; SOURCE 15 CELL_LINE: RHABDOMYOSARCOMA; SOURCE 16 MOL_ID: 4; SOURCE 17 ORGANISM_SCIENTIFIC: ENTEROVIRUS D68; SOURCE 18 ORGANISM_TAXID: 42789; SOURCE 19 STRAIN: 947; SOURCE 20 CELL_LINE: RHABDOMYOSARCOMA KEYWDS VIRUS, GENOME RELEASE, RECEPTOR EXPDTA ELECTRON MICROSCOPY AUTHOR Y.LIU,M.G.ROSSMANN REVDAT 5 13-MAR-24 6CVB 1 REMARK HETSYN REVDAT 4 29-JUL-20 6CVB 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 FORMUL LINK SITE ATOM REVDAT 3 18-DEC-19 6CVB 1 REMARK REVDAT 2 31-JUL-19 6CVB 1 JRNL REVDAT 1 24-JUL-19 6CVB 0 JRNL AUTH J.BAGGEN,Y.LIU,H.LYOO,A.L.W.VAN VLIET,M.WAHEDI,J.W.DE BRUIN, JRNL AUTH 2 R.W.ROBERTS,P.OVERDUIN,A.MEIJER,M.G.ROSSMANN,H.J.THIBAUT, JRNL AUTH 3 F.J.M.VAN KUPPEVELD JRNL TITL BYPASSING PAN-ENTEROVIRUS HOST FACTOR PLA2G16. JRNL REF NAT COMMUN V. 10 3171 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31320648 JRNL DOI 10.1038/S41467-019-11256-Z REMARK 2 REMARK 2 RESOLUTION. 2.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : LEGINON, CTFFIND, UCSF CHIMERA, COOT, REMARK 3 JSPR, JSPR, RELION, JSPR, PHENIX, REMARK 3 REFMAC, COOT REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.430 REMARK 3 NUMBER OF PARTICLES : 5938 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6CVB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000233419. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ENTEROVIRUS D68 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.20 REMARK 245 SAMPLE DETAILS : GROWN IN RD CELLS REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 330 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 29000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 -0.951057 -0.000001 394.08962 REMARK 350 BIOMT2 2 0.951057 0.309017 0.000001 -62.41782 REMARK 350 BIOMT3 2 -0.000001 -0.000001 1.000000 0.00030 REMARK 350 BIOMT1 3 -0.809017 -0.587785 -0.000001 575.23288 REMARK 350 BIOMT2 3 0.587785 -0.809017 0.000000 293.09551 REMARK 350 BIOMT3 3 -0.000001 0.000000 1.000000 0.00044 REMARK 350 BIOMT1 4 -0.809017 0.587785 -0.000001 293.09595 REMARK 350 BIOMT2 4 -0.587785 -0.809017 0.000000 575.23266 REMARK 350 BIOMT3 4 -0.000001 0.000000 1.000000 0.00022 REMARK 350 BIOMT1 5 0.309017 0.951057 -0.000001 -62.41752 REMARK 350 BIOMT2 5 -0.951057 0.309017 -0.000001 394.08967 REMARK 350 BIOMT3 5 -0.000001 0.000001 1.000000 -0.00005 REMARK 350 BIOMT1 6 -0.947214 -0.162459 0.276392 439.98747 REMARK 350 BIOMT2 6 -0.162459 -0.500000 -0.850651 603.14644 REMARK 350 BIOMT3 6 0.276392 -0.850651 0.447214 270.49075 REMARK 350 BIOMT1 7 -0.447213 0.850651 0.276393 76.84069 REMARK 350 BIOMT2 7 -0.525730 0.000000 -0.850651 570.33161 REMARK 350 BIOMT3 7 -0.723607 -0.525730 0.447213 432.50993 REMARK 350 BIOMT1 8 0.670821 0.688191 0.276393 -152.49712 REMARK 350 BIOMT2 8 -0.162459 0.500000 -0.850651 363.14644 REMARK 350 BIOMT3 8 -0.723607 0.525732 0.447213 180.15882 REMARK 350 BIOMT1 9 0.861803 -0.425326 0.276394 68.91110 REMARK 350 BIOMT2 9 0.425326 0.309017 -0.850650 267.91379 REMARK 350 BIOMT3 9 0.276394 0.850650 0.447214 -137.82193 REMARK 350 BIOMT1 10 -0.138197 -0.951057 0.276393 435.08671 REMARK 350 BIOMT2 10 0.425326 -0.309017 -0.850650 416.24194 REMARK 350 BIOMT3 10 0.894427 -0.000001 0.447214 -81.99373 REMARK 350 BIOMT1 11 -0.861803 -0.425326 -0.276394 615.24542 REMARK 350 BIOMT2 11 -0.425326 0.309017 0.850650 63.75806 REMARK 350 BIOMT3 11 -0.276394 0.850650 -0.447214 209.50969 REMARK 350 BIOMT1 12 -0.670821 0.688191 -0.276393 302.16565 REMARK 350 BIOMT2 12 0.162459 0.500000 0.850651 -123.14643 REMARK 350 BIOMT3 12 0.723607 0.525732 -0.447213 47.48999 REMARK 350 BIOMT1 13 0.447213 0.850651 -0.276393 -5.15327 REMARK 350 BIOMT2 13 0.525730 0.000000 0.850651 -90.33160 REMARK 350 BIOMT3 13 0.723607 -0.525730 -0.447213 299.84070 REMARK 350 BIOMT1 14 0.947214 -0.162459 -0.276392 117.99296 REMARK 350 BIOMT2 14 0.162459 -0.500000 0.850651 116.85357 REMARK 350 BIOMT3 14 -0.276392 -0.850651 -0.447214 617.82171 REMARK 350 BIOMT1 15 0.138197 -0.951057 -0.276393 501.42043 REMARK 350 BIOMT2 15 -0.425326 -0.309017 0.850650 212.08622 REMARK 350 BIOMT3 15 -0.894427 -0.000001 -0.447214 561.99407 REMARK 350 BIOMT1 16 0.809017 0.587785 0.000001 -95.23287 REMARK 350 BIOMT2 16 0.587785 -0.809017 0.000000 293.09552 REMARK 350 BIOMT3 16 0.000001 0.000000 -1.000000 479.99956 REMARK 350 BIOMT1 17 0.809017 -0.587785 0.000001 186.90406 REMARK 350 BIOMT2 17 -0.587785 -0.809017 0.000000 575.23266 REMARK 350 BIOMT3 17 0.000001 0.000000 -1.000000 479.99978 REMARK 350 BIOMT1 18 -0.309017 -0.951057 0.000001 542.41753 REMARK 350 BIOMT2 18 -0.951057 0.309017 -0.000001 394.08966 REMARK 350 BIOMT3 18 0.000001 -0.000001 -1.000000 480.00005 REMARK 350 BIOMT1 19 -1.000000 0.000000 0.000000 480.00001 REMARK 350 BIOMT2 19 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 19 0.000000 0.000000 -1.000000 480.00000 REMARK 350 BIOMT1 20 -0.309017 0.951057 0.000001 85.91039 REMARK 350 BIOMT2 20 0.951057 0.309017 0.000001 -62.41782 REMARK 350 BIOMT3 20 0.000001 0.000001 -1.000000 479.99970 REMARK 350 BIOMT1 21 -0.138197 -0.425326 0.894427 160.58324 REMARK 350 BIOMT2 21 0.951057 -0.309017 0.000001 85.91034 REMARK 350 BIOMT3 21 0.276393 0.850650 0.447214 -137.82186 REMARK 350 BIOMT1 22 -0.447215 0.000000 0.894427 132.66923 REMARK 350 BIOMT2 22 0.000000 -1.000000 0.000000 480.00001 REMARK 350 BIOMT3 22 0.894427 0.000000 0.447215 -81.99395 REMARK 350 BIOMT1 23 -0.138197 0.425326 0.894427 -43.57327 REMARK 350 BIOMT2 23 -0.951057 -0.309017 -0.000001 542.41783 REMARK 350 BIOMT3 23 0.276393 -0.850650 0.447214 270.49038 REMARK 350 BIOMT1 24 0.361803 0.262866 0.894427 -124.58312 REMARK 350 BIOMT2 24 -0.587785 0.809017 0.000000 186.90449 REMARK 350 BIOMT3 24 -0.723607 -0.525731 0.447214 432.50978 REMARK 350 BIOMT1 25 0.361803 -0.262866 0.894427 1.59254 REMARK 350 BIOMT2 25 0.587785 0.809017 0.000000 -95.23265 REMARK 350 BIOMT3 25 -0.723607 0.525731 0.447214 180.15893 REMARK 350 BIOMT1 26 0.447213 -0.525730 0.723607 85.17834 REMARK 350 BIOMT2 26 -0.850651 0.000000 0.525730 317.98099 REMARK 350 BIOMT3 26 -0.276393 -0.850651 -0.447213 617.82168 REMARK 350 BIOMT1 27 -0.361803 -0.587785 0.723607 294.23561 REMARK 350 BIOMT2 27 -0.262866 0.809017 0.525731 -17.25167 REMARK 350 BIOMT3 27 -0.894427 0.000000 -0.447214 561.99391 REMARK 350 BIOMT1 28 -0.670821 0.162459 0.723607 188.34118 REMARK 350 BIOMT2 28 0.688191 0.500000 0.525732 -171.34133 REMARK 350 BIOMT3 28 -0.276393 0.850651 -0.447213 209.50936 REMARK 350 BIOMT1 29 -0.052788 0.688191 0.723607 -86.16244 REMARK 350 BIOMT2 29 0.688191 -0.500000 0.525732 68.65868 REMARK 350 BIOMT3 29 0.723607 0.525732 -0.447213 47.48970 REMARK 350 BIOMT1 30 0.638196 0.262866 0.723608 -149.92058 REMARK 350 BIOMT2 30 -0.262866 -0.809017 0.525731 371.07650 REMARK 350 BIOMT3 30 0.723608 -0.525731 -0.447213 299.84059 REMARK 350 BIOMT1 31 0.052788 0.688191 -0.723607 235.83097 REMARK 350 BIOMT2 31 -0.688191 -0.500000 -0.525732 651.34134 REMARK 350 BIOMT3 31 -0.723607 0.525732 0.447213 180.15911 REMARK 350 BIOMT1 32 0.670821 0.162459 -0.723607 213.67841 REMARK 350 BIOMT2 32 -0.688191 0.500000 -0.525732 411.34133 REMARK 350 BIOMT3 32 0.276393 0.850651 0.447213 -137.82182 REMARK 350 BIOMT1 33 0.361803 -0.587785 -0.723607 467.90133 REMARK 350 BIOMT2 33 0.262866 0.809017 -0.525731 108.92351 REMARK 350 BIOMT3 33 0.894427 0.000000 0.447214 -81.99370 REMARK 350 BIOMT1 34 -0.447213 -0.525730 -0.723607 647.17229 REMARK 350 BIOMT2 34 0.850651 0.000000 -0.525730 162.01902 REMARK 350 BIOMT3 34 0.276393 -0.850651 0.447213 270.49091 REMARK 350 BIOMT1 35 -0.638196 0.262866 -0.723608 503.74493 REMARK 350 BIOMT2 35 0.262866 -0.809017 -0.525731 497.25167 REMARK 350 BIOMT3 35 -0.723608 -0.525731 0.447213 432.51025 REMARK 350 BIOMT1 36 -0.361803 0.262866 -0.894427 478.40747 REMARK 350 BIOMT2 36 0.587785 0.809017 0.000000 -95.23265 REMARK 350 BIOMT3 36 0.723607 -0.525731 -0.447214 299.84106 REMARK 350 BIOMT1 37 0.138197 0.425326 -0.894427 319.41677 REMARK 350 BIOMT2 37 0.951057 -0.309017 0.000001 85.91034 REMARK 350 BIOMT3 37 -0.276393 -0.850650 -0.447214 617.82186 REMARK 350 BIOMT1 38 0.447215 0.000000 -0.894427 347.33078 REMARK 350 BIOMT2 38 0.000000 -1.000000 0.000000 480.00001 REMARK 350 BIOMT3 38 -0.894427 0.000000 -0.447215 561.99396 REMARK 350 BIOMT1 39 0.138197 -0.425326 -0.894427 523.57328 REMARK 350 BIOMT2 39 -0.951057 -0.309017 -0.000001 542.41782 REMARK 350 BIOMT3 39 -0.276393 0.850650 -0.447214 209.50962 REMARK 350 BIOMT1 40 -0.361803 -0.262866 -0.894427 604.58313 REMARK 350 BIOMT2 40 -0.587785 0.809017 0.000000 186.90449 REMARK 350 BIOMT3 40 0.723607 0.525731 -0.447214 47.49022 REMARK 350 BIOMT1 41 -0.138197 0.951057 0.276393 -21.42043 REMARK 350 BIOMT2 41 -0.425326 -0.309017 0.850650 212.08622 REMARK 350 BIOMT3 41 0.894427 0.000001 0.447214 -81.99407 REMARK 350 BIOMT1 42 0.861803 0.425326 0.276394 -135.24541 REMARK 350 BIOMT2 42 -0.425326 0.309017 0.850650 63.75806 REMARK 350 BIOMT3 42 0.276394 -0.850650 0.447214 270.49031 REMARK 350 BIOMT1 43 0.670821 -0.688191 0.276393 177.83435 REMARK 350 BIOMT2 43 0.162459 0.500000 0.850651 -123.14643 REMARK 350 BIOMT3 43 -0.723607 -0.525732 0.447213 432.51001 REMARK 350 BIOMT1 44 -0.447213 -0.850651 0.276393 485.15327 REMARK 350 BIOMT2 44 0.525730 0.000000 0.850651 -90.33160 REMARK 350 BIOMT3 44 -0.723607 0.525730 0.447213 180.15930 REMARK 350 BIOMT1 45 -0.947214 0.162459 0.276392 362.00705 REMARK 350 BIOMT2 45 0.162459 -0.500000 0.850651 116.85357 REMARK 350 BIOMT3 45 0.276392 0.850651 0.447214 -137.82171 REMARK 350 BIOMT1 46 0.052788 -0.688191 -0.723607 566.16244 REMARK 350 BIOMT2 46 0.688191 -0.500000 0.525732 68.65867 REMARK 350 BIOMT3 46 -0.723607 -0.525732 0.447213 432.51030 REMARK 350 BIOMT1 47 -0.638196 -0.262866 -0.723608 629.92058 REMARK 350 BIOMT2 47 -0.262866 -0.809017 0.525731 371.07649 REMARK 350 BIOMT3 47 -0.723608 0.525731 0.447213 180.15941 REMARK 350 BIOMT1 48 -0.447213 0.525730 -0.723607 394.82167 REMARK 350 BIOMT2 48 -0.850651 0.000000 0.525730 317.98098 REMARK 350 BIOMT3 48 0.276393 0.850651 0.447213 -137.82168 REMARK 350 BIOMT1 49 0.361803 0.587785 -0.723607 185.76440 REMARK 350 BIOMT2 49 -0.262866 0.809017 0.525731 -17.25167 REMARK 350 BIOMT3 49 0.894427 0.000000 0.447214 -81.99392 REMARK 350 BIOMT1 50 0.670821 -0.162459 -0.723607 291.65882 REMARK 350 BIOMT2 50 0.688191 0.500000 0.525732 -171.34133 REMARK 350 BIOMT3 50 0.276393 -0.850651 0.447213 270.49063 REMARK 350 BIOMT1 51 -0.361803 0.587785 0.723607 12.09868 REMARK 350 BIOMT2 51 0.262866 0.809017 -0.525731 108.92351 REMARK 350 BIOMT3 51 -0.894427 0.000000 -0.447214 561.99370 REMARK 350 BIOMT1 52 0.447213 0.525730 0.723607 -167.17229 REMARK 350 BIOMT2 52 0.850651 0.000000 -0.525730 162.01902 REMARK 350 BIOMT3 52 -0.276393 0.850651 -0.447213 209.50909 REMARK 350 BIOMT1 53 0.638196 -0.262866 0.723608 -23.74492 REMARK 350 BIOMT2 53 0.262866 -0.809017 -0.525731 497.25168 REMARK 350 BIOMT3 53 0.723608 0.525731 -0.447213 47.48975 REMARK 350 BIOMT1 54 -0.052788 -0.688191 0.723607 244.16904 REMARK 350 BIOMT2 54 -0.688191 -0.500000 -0.525732 651.34134 REMARK 350 BIOMT3 54 0.723607 -0.525732 -0.447213 299.84089 REMARK 350 BIOMT1 55 -0.670821 -0.162459 0.723607 266.32160 REMARK 350 BIOMT2 55 -0.688191 0.500000 -0.525732 411.34133 REMARK 350 BIOMT3 55 -0.276393 -0.850651 -0.447213 617.82182 REMARK 350 BIOMT1 56 0.447213 -0.850651 -0.276393 403.15932 REMARK 350 BIOMT2 56 -0.525730 0.000000 -0.850651 570.33161 REMARK 350 BIOMT3 56 0.723607 0.525730 -0.447213 47.49007 REMARK 350 BIOMT1 57 -0.670821 -0.688191 -0.276393 632.49713 REMARK 350 BIOMT2 57 -0.162459 0.500000 -0.850651 363.14643 REMARK 350 BIOMT3 57 0.723607 -0.525732 -0.447213 299.84118 REMARK 350 BIOMT1 58 -0.861803 0.425326 -0.276394 411.08891 REMARK 350 BIOMT2 58 0.425326 0.309017 -0.850650 267.91379 REMARK 350 BIOMT3 58 -0.276394 -0.850650 -0.447214 617.82193 REMARK 350 BIOMT1 59 0.138198 0.951057 -0.276393 44.91330 REMARK 350 BIOMT2 59 0.425326 -0.309017 -0.850650 416.24195 REMARK 350 BIOMT3 59 -0.894427 0.000001 -0.447214 561.99373 REMARK 350 BIOMT1 60 0.947214 0.162459 -0.276392 40.01254 REMARK 350 BIOMT2 60 -0.162459 -0.500000 -0.850651 603.14644 REMARK 350 BIOMT3 60 -0.276392 0.850651 -0.447214 209.50925 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 24 REMARK 465 GLY A 129 REMARK 465 SER A 130 REMARK 465 SER A 131 REMARK 465 ASN A 132 REMARK 465 ASN A 133 REMARK 465 THR A 297 REMARK 465 SER C 1 REMARK 465 PRO C 2 REMARK 465 SER C 3 REMARK 465 ALA C 4 REMARK 465 GLU C 5 REMARK 465 ALA C 6 REMARK 465 CYS C 7 REMARK 465 GLY C 8 REMARK 465 TYR C 9 REMARK 465 THR C 247 REMARK 465 GLN C 248 REMARK 465 GLY D 1 REMARK 465 ALA D 2 REMARK 465 GLN D 3 REMARK 465 VAL D 4 REMARK 465 THR D 5 REMARK 465 ARG D 6 REMARK 465 GLN D 7 REMARK 465 GLN D 8 REMARK 465 THR D 9 REMARK 465 GLY D 10 REMARK 465 THR D 11 REMARK 465 HIS D 12 REMARK 465 GLU D 13 REMARK 465 ASN D 14 REMARK 465 ALA D 15 REMARK 465 ASN D 16 REMARK 465 ILE D 17 REMARK 465 ALA D 18 REMARK 465 THR D 19 REMARK 465 ASN D 20 REMARK 465 GLY D 21 REMARK 465 SER D 22 REMARK 465 HIS D 23 REMARK 465 ILE D 24 REMARK 465 THR D 25 REMARK 465 TYR D 26 REMARK 465 ASN D 27 REMARK 465 GLN D 28 REMARK 465 GLY D 59 REMARK 465 LEU D 60 REMARK 465 LYS D 61 REMARK 465 ALA D 62 REMARK 465 GLY D 63 REMARK 465 ALA D 64 REMARK 465 PRO D 65 REMARK 465 VAL D 66 REMARK 465 LEU D 67 REMARK 465 LYS D 68 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 15 -161.89 -123.63 REMARK 500 ALA A 18 85.32 -152.68 REMARK 500 ASN A 27 -164.96 -116.31 REMARK 500 ASP A 159 37.19 -94.85 REMARK 500 ALA A 201 44.64 -100.15 REMARK 500 ALA A 250 85.07 54.72 REMARK 500 LYS A 268 -35.60 -133.82 REMARK 500 ALA A 279 92.84 -162.27 REMARK 500 SER B 60 -28.10 69.17 REMARK 500 PHE B 157 34.47 -91.98 REMARK 500 THR B 198 -106.19 -116.73 REMARK 500 LEU B 226 86.47 62.98 REMARK 500 GLU C 27 66.63 -112.41 REMARK 500 ASN C 30 101.65 47.55 REMARK 500 VAL C 48 -58.24 -125.02 REMARK 500 GLU C 57 -116.28 62.30 REMARK 500 ASP C 163 22.38 -143.92 REMARK 500 THR C 165 -119.47 -101.43 REMARK 500 PRO C 213 79.07 -63.34 REMARK 500 LYS D 42 48.27 -95.27 REMARK 500 PRO D 55 33.71 -88.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-7638 RELATED DB: EMDB REMARK 900 CRYOEM STRUCTURE OF HUMAN ENTEROVIRUS D68 IN COMPLEX WITH 6'-SIALYL- REMARK 900 N-ACETYLLACTOSAMINE REMARK 900 RELATED ID: EMD-7632 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-7633 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-7634 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-7635 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-7636 RELATED DB: EMDB DBREF1 6CVB A 1 297 UNP A0A0X7Z9B1_9ENTO DBREF2 6CVB A A0A0X7Z9B1 565 861 DBREF 6CVB B 1 247 UNP E9RIT6 E9RIT6_9ENTO 1 247 DBREF1 6CVB C 1 248 UNP A0A097ZN88_9ENTO DBREF2 6CVB C A0A097ZN88 1 248 DBREF1 6CVB D 1 68 UNP A0A0P0DH17_9ENTO DBREF2 6CVB D A0A0P0DH17 2 69 SEQADV 6CVB ARG C 116 UNP A0A097ZN8 LYS 116 CONFLICT SEQRES 1 A 297 ILE GLU SER ILE ILE LYS THR ALA THR ASP THR VAL LYS SEQRES 2 A 297 SER GLU ILE ASN ALA GLU LEU GLY VAL VAL PRO SER LEU SEQRES 3 A 297 ASN ALA VAL GLU THR GLY ALA THR SER ASN THR GLU PRO SEQRES 4 A 297 GLU GLU ALA ILE GLN THR ARG THR VAL ILE ASN GLN HIS SEQRES 5 A 297 GLY VAL SER GLU THR LEU VAL GLU ASN PHE LEU SER ARG SEQRES 6 A 297 ALA ALA LEU VAL SER LYS ARG SER PHE GLU TYR LYS ASP SEQRES 7 A 297 HIS THR SER SER ALA ALA GLN THR ASP LYS ASN PHE PHE SEQRES 8 A 297 LYS TRP THR ILE ASN THR ARG SER PHE VAL GLN LEU ARG SEQRES 9 A 297 ARG LYS LEU GLU LEU PHE THR TYR LEU ARG PHE ASP ALA SEQRES 10 A 297 GLU ILE THR ILE LEU THR THR VAL ALA VAL ASN GLY SER SEQRES 11 A 297 SER ASN ASN THR TYR MET GLY LEU PRO ASN LEU THR LEU SEQRES 12 A 297 GLN ALA MET PHE VAL PRO THR GLY ALA LEU THR PRO GLU SEQRES 13 A 297 LYS GLN ASP SER PHE HIS TRP GLN SER GLY SER ASN ALA SEQRES 14 A 297 SER VAL PHE PHE LYS ILE SER ASP PRO PRO ALA ARG MET SEQRES 15 A 297 THR ILE PRO PHE MET CYS ILE ASN SER ALA TYR SER VAL SEQRES 16 A 297 PHE TYR ASP GLY PHE ALA GLY PHE GLU LYS SER GLY LEU SEQRES 17 A 297 TYR GLY ILE ASN PRO ALA ASP THR ILE GLY ASN LEU CYS SEQRES 18 A 297 VAL ARG ILE VAL ASN GLU HIS GLN PRO VAL GLY PHE THR SEQRES 19 A 297 VAL THR VAL ARG VAL TYR MET LYS PRO LYS HIS ILE LYS SEQRES 20 A 297 ALA TRP ALA PRO ARG PRO PRO ARG THR LEU PRO TYR MET SEQRES 21 A 297 SER ILE ALA ASN ALA ASN TYR LYS GLY LYS LYS ARG ALA SEQRES 22 A 297 PRO ASN ALA LEU ASN ALA ILE ILE GLY ASN ARG ASP SER SEQRES 23 A 297 VAL LYS THR MET PRO HIS ASN ILE VAL THR THR SEQRES 1 B 247 GLY VAL PRO THR TYR LEU LEU PRO GLY SER GLY GLN PHE SEQRES 2 B 247 LEU THR THR ASP ASP HIS SER SER ALA PRO VAL LEU PRO SEQRES 3 B 247 CYS PHE ASN PRO THR PRO GLU MET HIS ILE PRO GLY GLN SEQRES 4 B 247 VAL ARG ASN MET LEU GLU VAL VAL GLN VAL GLU SER MET SEQRES 5 B 247 MET GLU ILE ASN ASN THR GLU SER ALA VAL GLY MET GLU SEQRES 6 B 247 ARG LEU LYS VAL ASP ILE SER ALA LEU THR ASP VAL ASP SEQRES 7 B 247 GLN LEU LEU PHE ASN ILE PRO LEU ASP ILE GLN LEU ASP SEQRES 8 B 247 GLY PRO LEU ARG ASN THR LEU VAL GLY ASN ILE SER ARG SEQRES 9 B 247 TYR TYR THR HIS TRP SER GLY SER LEU GLU MET THR PHE SEQRES 10 B 247 MET PHE CYS GLY SER PHE MET ALA THR GLY LYS LEU ILE SEQRES 11 B 247 LEU CYS TYR THR PRO PRO GLY GLY SER CYS PRO THR THR SEQRES 12 B 247 ARG GLU THR ALA MET LEU GLY THR HIS ILE VAL TRP ASP SEQRES 13 B 247 PHE GLY LEU GLN SER SER VAL THR LEU ILE ILE PRO TRP SEQRES 14 B 247 ILE SER GLY SER HIS TYR ARG MET PHE ASN ASN ASP ALA SEQRES 15 B 247 LYS SER THR ASN ALA ASN VAL GLY TYR VAL THR CYS PHE SEQRES 16 B 247 MET GLN THR ASN LEU ILE VAL PRO SER GLU SER SER ASP SEQRES 17 B 247 THR CYS SER LEU ILE GLY PHE ILE ALA ALA LYS ASP ASP SEQRES 18 B 247 PHE SER LEU ARG LEU MET ARG ASP SER PRO ASP ILE GLY SEQRES 19 B 247 GLN ILE ASP HIS LEU HIS ALA ALA GLU ALA ALA TYR GLN SEQRES 1 C 248 SER PRO SER ALA GLU ALA CYS GLY TYR SER ASP ARG VAL SEQRES 2 C 248 LEU GLN LEU LYS LEU GLY ASN SER ALA ILE VAL THR GLN SEQRES 3 C 248 GLU ALA ALA ASN TYR CYS CYS ALA TYR GLY GLU TRP PRO SEQRES 4 C 248 ASN TYR LEU PRO ASP HIS GLU ALA VAL ALA ILE ASP LYS SEQRES 5 C 248 PRO THR GLN PRO GLU THR ALA THR ASP ARG PHE TYR THR SEQRES 6 C 248 LEU LYS SER VAL LYS TRP GLU ALA GLY SER THR GLY TRP SEQRES 7 C 248 TRP TRP LYS LEU PRO ASP ALA LEU ASN ASN ILE GLY MET SEQRES 8 C 248 PHE GLY GLN ASN VAL GLN HIS HIS TYR LEU TYR ARG SER SEQRES 9 C 248 GLY PHE LEU ILE HIS VAL GLN CYS ASN ALA THR ARG PHE SEQRES 10 C 248 HIS GLN GLY ALA LEU LEU VAL VAL ALA ILE PRO GLU HIS SEQRES 11 C 248 GLN ARG GLY ALA HIS ASN THR ASN THR SER PRO GLY PHE SEQRES 12 C 248 ASP ASP ILE MET LYS GLY GLU GLU GLY GLY THR PHE ASN SEQRES 13 C 248 HIS PRO TYR VAL LEU ASP ASP GLY THR SER LEU ALA CYS SEQRES 14 C 248 ALA THR ILE PHE PRO HIS GLN TRP ILE ASN LEU ARG THR SEQRES 15 C 248 ASN ASN SER ALA THR ILE VAL LEU PRO TRP MET ASN ALA SEQRES 16 C 248 ALA PRO MET ASP PHE PRO LEU ARG HIS ASN GLN TRP THR SEQRES 17 C 248 LEU ALA ILE ILE PRO VAL VAL PRO LEU GLY THR ARG THR SEQRES 18 C 248 MET SER SER MET VAL PRO ILE THR VAL SER ILE ALA PRO SEQRES 19 C 248 MET CYS CYS GLU PHE ASN GLY LEU ARG HIS ALA ILE THR SEQRES 20 C 248 GLN SEQRES 1 D 68 GLY ALA GLN VAL THR ARG GLN GLN THR GLY THR HIS GLU SEQRES 2 D 68 ASN ALA ASN ILE ALA THR ASN GLY SER HIS ILE THR TYR SEQRES 3 D 68 ASN GLN ILE ASN PHE TYR LYS ASP SER TYR ALA ALA SER SEQRES 4 D 68 ALA SER LYS GLN ASP PHE SER GLN ASP PRO SER LYS PHE SEQRES 5 D 68 THR GLU PRO VAL VAL GLU GLY LEU LYS ALA GLY ALA PRO SEQRES 6 D 68 VAL LEU LYS HET NAG E 1 15 HET GAL E 2 11 HET SIA E 3 20 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID FORMUL 5 NAG C8 H15 N O6 FORMUL 5 GAL C6 H12 O6 FORMUL 5 SIA C11 H19 N O9 FORMUL 6 HOH *337(H2 O) HELIX 1 AA1 GLU A 38 ILE A 43 1 6 HELIX 2 AA2 VAL A 54 THR A 57 5 4 HELIX 3 AA3 LEU A 58 SER A 64 1 7 HELIX 4 AA4 PHE A 100 GLU A 108 1 9 HELIX 5 AA5 SER A 160 SER A 165 5 6 HELIX 6 AA6 ASN A 212 THR A 216 5 5 HELIX 7 AA7 MET B 43 GLN B 48 1 6 HELIX 8 AA8 VAL B 62 LYS B 68 5 7 HELIX 9 AA9 THR B 97 ARG B 104 1 8 HELIX 10 AB1 THR B 143 MET B 148 1 6 HELIX 11 AB2 ALA B 242 GLN B 247 5 6 HELIX 12 AB3 TYR C 35 GLU C 37 5 3 HELIX 13 AB4 PRO C 56 THR C 60 5 5 HELIX 14 AB5 PRO C 83 ASN C 87 5 5 HELIX 15 AB6 ILE C 89 HIS C 98 1 10 HELIX 16 AB7 GLY C 142 MET C 147 1 6 HELIX 17 AB8 LYS C 148 GLY C 152 5 5 HELIX 18 AB9 HIS C 157 LEU C 161 5 5 HELIX 19 AC1 CYS C 169 PHE C 173 5 5 HELIX 20 AC2 ASP D 34 ALA D 38 5 5 HELIX 21 AC3 PRO D 49 GLU D 54 1 6 SHEET 1 AA1 2 SER A 3 ILE A 4 0 SHEET 2 AA1 2 SER D 46 GLN D 47 -1 O GLN D 47 N SER A 3 SHEET 1 AA2 5 ALA A 67 TYR A 76 0 SHEET 2 AA2 5 PHE A 233 PRO A 251 -1 O PHE A 233 N TYR A 76 SHEET 3 AA2 5 PHE A 110 VAL A 127 -1 N LEU A 122 O ARG A 238 SHEET 4 AA2 5 ALA A 180 ILE A 184 -1 O ILE A 184 N ALA A 117 SHEET 5 AA2 5 ALA B 22 PRO B 23 1 O ALA B 22 N THR A 183 SHEET 1 AA3 4 TYR A 193 SER A 194 0 SHEET 2 AA3 4 PHE A 110 VAL A 127 -1 N LEU A 113 O TYR A 193 SHEET 3 AA3 4 PHE A 233 PRO A 251 -1 O ARG A 238 N LEU A 122 SHEET 4 AA3 4 GLN B 39 VAL B 40 -1 O VAL B 40 N ALA A 248 SHEET 1 AA4 4 PHE A 90 THR A 94 0 SHEET 2 AA4 4 ASN A 219 ILE A 224 -1 O VAL A 222 N PHE A 91 SHEET 3 AA4 4 THR A 142 VAL A 148 -1 N VAL A 148 O ASN A 219 SHEET 4 AA4 4 ALA A 169 LYS A 174 -1 O PHE A 173 N LEU A 143 SHEET 1 AA5 3 SER B 51 MET B 52 0 SHEET 2 AA5 3 THR B 209 ALA B 218 -1 O ILE B 216 N SER B 51 SHEET 3 AA5 3 VAL B 69 SER B 72 -1 N ILE B 71 O CYS B 210 SHEET 1 AA6 4 SER B 51 MET B 52 0 SHEET 2 AA6 4 THR B 209 ALA B 218 -1 O ILE B 216 N SER B 51 SHEET 3 AA6 4 LEU B 113 PHE B 119 -1 N THR B 116 O PHE B 215 SHEET 4 AA6 4 SER B 162 ILE B 167 -1 O LEU B 165 N MET B 115 SHEET 1 AA7 4 LEU B 80 PRO B 85 0 SHEET 2 AA7 4 TYR B 191 MET B 196 -1 O CYS B 194 N LEU B 81 SHEET 3 AA7 4 LYS B 128 THR B 134 -1 N THR B 134 O TYR B 191 SHEET 4 AA7 4 THR B 151 ASP B 156 -1 O THR B 151 N TYR B 133 SHEET 1 AA8 3 ARG B 176 MET B 177 0 SHEET 2 AA8 3 TYR B 106 SER B 110 -1 N TRP B 109 O ARG B 176 SHEET 3 AA8 3 SER B 223 MET B 227 -1 O ARG B 225 N HIS B 108 SHEET 1 AA9 2 LEU C 14 LEU C 18 0 SHEET 2 AA9 2 SER C 21 THR C 25 -1 O ILE C 23 N LEU C 16 SHEET 1 AB1 5 CYS C 32 CYS C 33 0 SHEET 2 AB1 5 SER C 185 LEU C 190 1 O VAL C 189 N CYS C 32 SHEET 3 AB1 5 HIS C 99 GLN C 111 -1 N PHE C 106 O LEU C 190 SHEET 4 AB1 5 VAL C 226 LEU C 242 -1 O MET C 235 N GLY C 105 SHEET 5 AB1 5 TYR C 64 THR C 65 -1 N TYR C 64 O ILE C 232 SHEET 1 AB2 5 CYS C 32 CYS C 33 0 SHEET 2 AB2 5 SER C 185 LEU C 190 1 O VAL C 189 N CYS C 32 SHEET 3 AB2 5 HIS C 99 GLN C 111 -1 N PHE C 106 O LEU C 190 SHEET 4 AB2 5 VAL C 226 LEU C 242 -1 O MET C 235 N GLY C 105 SHEET 5 AB2 5 VAL C 69 TRP C 71 -1 N TRP C 71 O VAL C 226 SHEET 1 AB3 5 GLY C 153 THR C 154 0 SHEET 2 AB3 5 TRP C 78 LEU C 82 -1 N TRP C 79 O GLY C 153 SHEET 3 AB3 5 TRP C 207 GLY C 218 -1 O TRP C 207 N LEU C 82 SHEET 4 AB3 5 GLN C 119 PRO C 128 -1 N VAL C 125 O ALA C 210 SHEET 5 AB3 5 HIS C 175 ASN C 179 -1 O GLN C 176 N VAL C 124 LINK O4 NAG E 1 C1 GAL E 2 1555 1555 1.43 LINK O6 GAL E 2 C2 SIA E 3 1555 1555 1.43 CISPEP 1 ALA A 273 PRO A 274 0 6.55 CISPEP 2 LEU C 82 PRO C 83 0 10.24 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000