HEADER HYDROLASE/DNA/RNA 28-MAR-18 6CVO TITLE HUMAN APRATAXIN (APTX) BOUND TO NICKED RNA-DNA, AMP AND ZN PRODUCT TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: APRATAXIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: APRATAXIN CATALYTIC DOMAIN; COMPND 5 SYNONYM: FORKHEAD-ASSOCIATED DOMAIN HISTIDINE TRIAD-LIKE PROTEIN,FHA- COMPND 6 HIT; COMPND 7 EC: 3.1.11.7,3.1.12.2; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA/RNA (5'-R(P*G)- COMPND 11 D(P*TP*TP*CP*TP*AP*TP*AP*TP*AP*TP*AP*GP*AP*AP*CP*GP*CP*TP*GP*TP*T)- COMPND 12 3'); COMPND 13 CHAIN: D, G; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: DNA (5'-D(*AP*AP*CP*AP*GP*C)-3'); COMPND 17 CHAIN: E, H; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APTX, AXA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 OTHER_DETAILS: CHEMICALLY SYNTHESIZED NUCLEIC ACID; SOURCE 16 MOL_ID: 3; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_TAXID: 9606 KEYWDS PROTEIN-DNA COMPLEX, DNA REPAIR, 5'-DNA END PROCESSING, HISTIDINE KEYWDS 2 TRIAD DOMAIN, HIT DOMAIN, ZINC-FINGER, 5'-DNA END RECOGNITION, KEYWDS 3 HYDROLASE-DNA-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.SCHELLENBERG,P.P.TUMBALE,R.S.WILLIAMS REVDAT 4 04-OCT-23 6CVO 1 REMARK REVDAT 3 18-DEC-19 6CVO 1 REMARK REVDAT 2 20-FEB-19 6CVO 1 REMARK REVDAT 1 29-AUG-18 6CVO 0 JRNL AUTH P.TUMBALE,M.J.SCHELLENBERG,G.A.MUELLER,E.FAIRWEATHER, JRNL AUTH 2 M.WATSON,J.N.LITTLE,J.KRAHN,I.WADDELL,R.E.LONDON, JRNL AUTH 3 R.S.WILLIAMS JRNL TITL MECHANISM OF APTX NICKED DNA SENSING AND PLEIOTROPIC JRNL TITL 2 INACTIVATION IN NEURODEGENERATIVE DISEASE. JRNL REF EMBO J. V. 37 2018 JRNL REFN ESSN 1460-2075 JRNL PMID 29934293 JRNL DOI 10.15252/EMBJ.201798875 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.6799 - 4.9907 1.00 2847 146 0.1722 0.1849 REMARK 3 2 4.9907 - 3.9621 1.00 2713 139 0.1453 0.1868 REMARK 3 3 3.9621 - 3.4615 1.00 2657 160 0.1683 0.1927 REMARK 3 4 3.4615 - 3.1451 1.00 2678 155 0.1819 0.2245 REMARK 3 5 3.1451 - 2.9197 1.00 2638 149 0.1992 0.2779 REMARK 3 6 2.9197 - 2.7476 1.00 2654 133 0.2190 0.2591 REMARK 3 7 2.7476 - 2.6100 1.00 2644 132 0.2268 0.2895 REMARK 3 8 2.6100 - 2.4964 1.00 2639 128 0.2175 0.2703 REMARK 3 9 2.4964 - 2.4003 1.00 2620 150 0.2291 0.2599 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4356 REMARK 3 ANGLE : 0.562 6122 REMARK 3 CHIRALITY : 0.041 672 REMARK 3 PLANARITY : 0.003 566 REMARK 3 DIHEDRAL : 19.825 2396 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 23 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2379 13.6650 45.5820 REMARK 3 T TENSOR REMARK 3 T11: 0.2525 T22: 0.1601 REMARK 3 T33: 0.2606 T12: -0.0054 REMARK 3 T13: -0.0565 T23: 0.0379 REMARK 3 L TENSOR REMARK 3 L11: 2.3660 L22: 1.8066 REMARK 3 L33: 3.0150 L12: -0.7187 REMARK 3 L13: -0.1386 L23: 1.2419 REMARK 3 S TENSOR REMARK 3 S11: -0.1010 S12: -0.2272 S13: -0.0017 REMARK 3 S21: 0.2781 S22: 0.0268 S23: -0.1376 REMARK 3 S31: 0.3386 S32: -0.0546 S33: 0.0534 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1628 23.9267 41.8384 REMARK 3 T TENSOR REMARK 3 T11: 0.2328 T22: 0.1687 REMARK 3 T33: 0.2468 T12: 0.0190 REMARK 3 T13: -0.0502 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 1.1259 L22: 1.8530 REMARK 3 L33: 1.4664 L12: 0.5352 REMARK 3 L13: -0.0611 L23: 1.0883 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: -0.0556 S13: 0.1441 REMARK 3 S21: 0.1084 S22: 0.0299 S23: -0.3246 REMARK 3 S31: -0.0868 S32: -0.1111 S33: -0.0166 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 218 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.0156 16.6050 34.4780 REMARK 3 T TENSOR REMARK 3 T11: 0.1508 T22: 0.1337 REMARK 3 T33: 0.2492 T12: -0.0022 REMARK 3 T13: -0.0058 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 1.4586 L22: 1.9114 REMARK 3 L33: 1.7157 L12: -0.2697 REMARK 3 L13: 0.0295 L23: -0.2277 REMARK 3 S TENSOR REMARK 3 S11: 0.0610 S12: 0.1754 S13: 0.2383 REMARK 3 S21: 0.0340 S22: -0.0712 S23: -0.3847 REMARK 3 S31: 0.0674 S32: 0.1274 S33: 0.0279 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 276 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5315 25.5982 28.9763 REMARK 3 T TENSOR REMARK 3 T11: 0.2755 T22: 0.2072 REMARK 3 T33: 0.2819 T12: 0.0135 REMARK 3 T13: 0.0108 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 2.1730 L22: 3.1778 REMARK 3 L33: 1.1260 L12: 1.6226 REMARK 3 L13: 0.8658 L23: 0.6895 REMARK 3 S TENSOR REMARK 3 S11: -0.1440 S12: 0.1767 S13: 0.3986 REMARK 3 S21: -0.3821 S22: 0.0451 S23: -0.0299 REMARK 3 S31: -0.3394 S32: -0.0449 S33: 0.0894 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 315 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3303 12.6112 18.7888 REMARK 3 T TENSOR REMARK 3 T11: 0.2683 T22: 0.4030 REMARK 3 T33: 0.2190 T12: -0.0549 REMARK 3 T13: -0.0496 T23: 0.0229 REMARK 3 L TENSOR REMARK 3 L11: 2.9031 L22: 3.0506 REMARK 3 L33: 3.4425 L12: 1.2208 REMARK 3 L13: -0.9641 L23: -1.0847 REMARK 3 S TENSOR REMARK 3 S11: -0.3341 S12: 0.1336 S13: 0.0432 REMARK 3 S21: -0.4985 S22: 0.1980 S23: -0.1700 REMARK 3 S31: 0.1456 S32: 0.5675 S33: 0.2029 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 329 THROUGH 339 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3447 3.6576 21.5663 REMARK 3 T TENSOR REMARK 3 T11: 0.4298 T22: 0.2786 REMARK 3 T33: 0.2871 T12: 0.0635 REMARK 3 T13: -0.0414 T23: -0.0435 REMARK 3 L TENSOR REMARK 3 L11: 9.1935 L22: 7.0191 REMARK 3 L33: 8.5529 L12: 1.9666 REMARK 3 L13: -3.3555 L23: -0.8799 REMARK 3 S TENSOR REMARK 3 S11: 0.0432 S12: 0.3893 S13: -0.9851 REMARK 3 S21: -0.9225 S22: 0.2574 S23: -0.1965 REMARK 3 S31: 1.3491 S32: 0.3407 S33: -0.3050 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3751 5.3972 30.9530 REMARK 3 T TENSOR REMARK 3 T11: 0.3505 T22: 0.3470 REMARK 3 T33: 0.2838 T12: -0.0639 REMARK 3 T13: -0.0093 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 2.3499 L22: 0.9071 REMARK 3 L33: 1.0753 L12: 1.6069 REMARK 3 L13: 1.6968 L23: 0.8752 REMARK 3 S TENSOR REMARK 3 S11: 0.2092 S12: -0.3576 S13: -0.1918 REMARK 3 S21: 0.0600 S22: -0.1173 S23: -0.1267 REMARK 3 S31: 0.2029 S32: -0.4117 S33: -0.1020 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 16 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.4723 -17.2521 11.7364 REMARK 3 T TENSOR REMARK 3 T11: 0.6290 T22: 0.8719 REMARK 3 T33: 0.5102 T12: -0.0814 REMARK 3 T13: -0.2149 T23: 0.0884 REMARK 3 L TENSOR REMARK 3 L11: 8.0482 L22: 3.5831 REMARK 3 L33: 4.4925 L12: 0.3321 REMARK 3 L13: 4.5111 L23: -0.3525 REMARK 3 S TENSOR REMARK 3 S11: -0.1170 S12: 0.1018 S13: -0.7742 REMARK 3 S21: -0.6779 S22: 0.3727 S23: 0.8607 REMARK 3 S31: 0.0162 S32: -1.7249 S33: -0.2702 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 164 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.2580 1.2883 -5.7555 REMARK 3 T TENSOR REMARK 3 T11: 0.4103 T22: 0.3204 REMARK 3 T33: 0.3426 T12: -0.0442 REMARK 3 T13: -0.1489 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 1.8257 L22: 2.8127 REMARK 3 L33: 3.5662 L12: -0.4450 REMARK 3 L13: 0.1548 L23: -1.9427 REMARK 3 S TENSOR REMARK 3 S11: 0.2404 S12: 0.3702 S13: -0.3446 REMARK 3 S21: -0.5945 S22: 0.1613 S23: 0.6547 REMARK 3 S31: 0.7997 S32: -0.3712 S33: -0.3768 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 193 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1830 5.9911 -3.0808 REMARK 3 T TENSOR REMARK 3 T11: 0.3103 T22: 0.2075 REMARK 3 T33: 0.2435 T12: 0.0194 REMARK 3 T13: -0.0423 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 2.1312 L22: 2.1517 REMARK 3 L33: 2.9005 L12: -0.7013 REMARK 3 L13: -0.4804 L23: 0.1774 REMARK 3 S TENSOR REMARK 3 S11: 0.0379 S12: 0.0914 S13: -0.4045 REMARK 3 S21: -0.2432 S22: 0.0922 S23: 0.2124 REMARK 3 S31: 0.4338 S32: 0.2993 S33: -0.1015 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 218 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5352 13.5172 -9.2839 REMARK 3 T TENSOR REMARK 3 T11: 0.3303 T22: 0.3268 REMARK 3 T33: 0.1715 T12: 0.0983 REMARK 3 T13: -0.0087 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 3.5326 L22: 1.7155 REMARK 3 L33: 1.8269 L12: 0.4869 REMARK 3 L13: -0.2148 L23: -0.3934 REMARK 3 S TENSOR REMARK 3 S11: 0.2671 S12: 0.5765 S13: 0.1992 REMARK 3 S21: -0.4798 S22: -0.2357 S23: -0.2046 REMARK 3 S31: 0.2351 S32: 0.4319 S33: -0.0652 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 252 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4546 8.5512 3.8882 REMARK 3 T TENSOR REMARK 3 T11: 0.2747 T22: 0.1829 REMARK 3 T33: 0.1854 T12: 0.0082 REMARK 3 T13: -0.0242 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 1.5340 L22: 1.2371 REMARK 3 L33: 1.4893 L12: 0.0407 REMARK 3 L13: 0.5401 L23: -0.5447 REMARK 3 S TENSOR REMARK 3 S11: 0.1846 S12: 0.0134 S13: -0.1500 REMARK 3 S21: -0.1079 S22: -0.1753 S23: 0.0158 REMARK 3 S31: 0.1789 S32: -0.0056 S33: 0.0135 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 276 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9110 9.8742 8.0505 REMARK 3 T TENSOR REMARK 3 T11: 0.2035 T22: 0.1997 REMARK 3 T33: 0.2145 T12: 0.0115 REMARK 3 T13: -0.0307 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 3.7337 L22: 2.3392 REMARK 3 L33: 3.4397 L12: 0.3079 REMARK 3 L13: -0.3604 L23: -0.0674 REMARK 3 S TENSOR REMARK 3 S11: 0.0190 S12: 0.3565 S13: -0.3919 REMARK 3 S21: -0.2344 S22: -0.0454 S23: -0.0628 REMARK 3 S31: 0.2093 S32: 0.0792 S33: 0.0512 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 287 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2483 9.3279 -9.6422 REMARK 3 T TENSOR REMARK 3 T11: 0.3477 T22: 0.5621 REMARK 3 T33: 0.3120 T12: 0.0586 REMARK 3 T13: 0.0946 T23: 0.0434 REMARK 3 L TENSOR REMARK 3 L11: 4.3126 L22: 5.3924 REMARK 3 L33: 4.6457 L12: -2.1553 REMARK 3 L13: -2.9336 L23: 3.4473 REMARK 3 S TENSOR REMARK 3 S11: 0.0291 S12: 0.6039 S13: -0.0156 REMARK 3 S21: -0.8933 S22: -0.1557 S23: -0.4756 REMARK 3 S31: -0.2066 S32: 0.9814 S33: 0.0844 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 301 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4915 3.1193 2.4643 REMARK 3 T TENSOR REMARK 3 T11: 0.3488 T22: 0.7541 REMARK 3 T33: 0.5267 T12: 0.2068 REMARK 3 T13: -0.0095 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 1.3435 L22: 1.3131 REMARK 3 L33: 2.7354 L12: 0.2350 REMARK 3 L13: -1.8409 L23: 0.1158 REMARK 3 S TENSOR REMARK 3 S11: 0.0907 S12: 0.6876 S13: -0.4554 REMARK 3 S21: -0.1310 S22: -0.5923 S23: -0.2202 REMARK 3 S31: 0.5683 S32: 1.5621 S33: 0.2838 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 315 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0894 19.2476 13.5785 REMARK 3 T TENSOR REMARK 3 T11: 0.2306 T22: 0.2838 REMARK 3 T33: 0.2654 T12: -0.0365 REMARK 3 T13: -0.0496 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 2.8238 L22: 4.2639 REMARK 3 L33: 4.3171 L12: 0.9885 REMARK 3 L13: -1.3722 L23: -1.5151 REMARK 3 S TENSOR REMARK 3 S11: -0.1061 S12: -0.0536 S13: 0.4863 REMARK 3 S21: -0.2920 S22: 0.0333 S23: 0.2093 REMARK 3 S31: -0.3591 S32: 0.0321 S33: -0.0379 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 329 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0975 22.4929 15.4403 REMARK 3 T TENSOR REMARK 3 T11: 0.2465 T22: 0.2223 REMARK 3 T33: 0.4275 T12: 0.0162 REMARK 3 T13: -0.0069 T23: -0.0699 REMARK 3 L TENSOR REMARK 3 L11: 2.5137 L22: 6.7647 REMARK 3 L33: 6.1648 L12: 1.4173 REMARK 3 L13: -0.0459 L23: -3.4042 REMARK 3 S TENSOR REMARK 3 S11: -0.2587 S12: -0.1199 S13: 0.9398 REMARK 3 S21: 0.5047 S22: 0.2489 S23: 0.2279 REMARK 3 S31: -0.5739 S32: -0.5779 S33: -0.0092 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5266 0.4109 22.0653 REMARK 3 T TENSOR REMARK 3 T11: 0.3501 T22: 0.3075 REMARK 3 T33: 0.3088 T12: -0.0965 REMARK 3 T13: -0.0525 T23: 0.0514 REMARK 3 L TENSOR REMARK 3 L11: 1.5828 L22: 0.4552 REMARK 3 L33: 0.9813 L12: -0.0171 REMARK 3 L13: 0.6143 L23: 0.3225 REMARK 3 S TENSOR REMARK 3 S11: 0.2026 S12: -0.3814 S13: -0.0863 REMARK 3 S21: 0.0397 S22: -0.0212 S23: 0.0184 REMARK 3 S31: 0.0603 S32: -0.1916 S33: -0.1905 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 11 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9316 16.6235 40.2197 REMARK 3 T TENSOR REMARK 3 T11: 0.4773 T22: 0.5069 REMARK 3 T33: 0.3714 T12: -0.0353 REMARK 3 T13: 0.0347 T23: -0.0851 REMARK 3 L TENSOR REMARK 3 L11: 1.9549 L22: 2.9806 REMARK 3 L33: 9.4118 L12: -0.2531 REMARK 3 L13: 1.3265 L23: 0.5323 REMARK 3 S TENSOR REMARK 3 S11: 0.1240 S12: -0.6950 S13: 0.5103 REMARK 3 S21: -0.1378 S22: 0.3096 S23: -0.3487 REMARK 3 S31: -1.5140 S32: -0.6906 S33: -0.4714 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 16 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4950 12.0519 59.5897 REMARK 3 T TENSOR REMARK 3 T11: 0.6373 T22: 0.4633 REMARK 3 T33: 0.3746 T12: 0.0546 REMARK 3 T13: 0.0759 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 1.7859 L22: 3.3820 REMARK 3 L33: 3.0299 L12: -0.3773 REMARK 3 L13: -0.6516 L23: -0.9382 REMARK 3 S TENSOR REMARK 3 S11: -0.4770 S12: -0.7251 S13: -0.5658 REMARK 3 S21: 0.6182 S22: 0.6521 S23: 0.1410 REMARK 3 S31: 0.4013 S32: -1.1181 S33: -0.2230 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 21 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3506 15.9577 73.4306 REMARK 3 T TENSOR REMARK 3 T11: 1.0289 T22: 1.0664 REMARK 3 T33: 0.5038 T12: -0.0670 REMARK 3 T13: 0.1624 T23: -0.2460 REMARK 3 L TENSOR REMARK 3 L11: 2.5717 L22: 0.8987 REMARK 3 L33: 0.2638 L12: 0.0019 REMARK 3 L13: 0.4661 L23: -0.3992 REMARK 3 S TENSOR REMARK 3 S11: -0.5836 S12: -0.2611 S13: 0.0906 REMARK 3 S21: 0.8963 S22: -0.0636 S23: 0.0270 REMARK 3 S31: 0.0379 S32: -0.4131 S33: 0.5391 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3771 18.6545 65.6928 REMARK 3 T TENSOR REMARK 3 T11: 0.5881 T22: 0.5680 REMARK 3 T33: 0.4180 T12: -0.1606 REMARK 3 T13: 0.1016 T23: -0.0826 REMARK 3 L TENSOR REMARK 3 L11: 5.6440 L22: 5.0599 REMARK 3 L33: 5.0744 L12: -1.2097 REMARK 3 L13: 0.7732 L23: -0.7657 REMARK 3 S TENSOR REMARK 3 S11: -0.4559 S12: -0.7344 S13: -0.4523 REMARK 3 S21: 0.3251 S22: -0.0947 S23: 1.0449 REMARK 3 S31: 0.8285 S32: -1.2534 S33: 0.4763 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.0326 -11.3993 10.5912 REMARK 3 T TENSOR REMARK 3 T11: 1.7744 T22: 1.3718 REMARK 3 T33: 0.3528 T12: 0.5131 REMARK 3 T13: -0.6279 T23: 0.0530 REMARK 3 L TENSOR REMARK 3 L11: 0.0799 L22: 0.3362 REMARK 3 L33: 4.4890 L12: 0.1620 REMARK 3 L13: -0.0873 L23: -0.2093 REMARK 3 S TENSOR REMARK 3 S11: 0.1212 S12: 0.4286 S13: 0.3967 REMARK 3 S21: -0.1784 S22: 0.7246 S23: 0.1416 REMARK 3 S31: -0.4339 S32: -0.4475 S33: 0.9215 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CVO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000232762. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25443 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.14500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.57100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4NDF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, 16% W/V POLYETHYLENE REMARK 280 GLYCOL 3350, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.45650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.58200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.27350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.58200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.45650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.27350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, B, G, E, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 161 REMARK 465 SER A 162 REMARK 465 HIS A 163 REMARK 465 MET A 164 REMARK 465 TRP A 340 REMARK 465 THR A 341 REMARK 465 GLN A 342 REMARK 465 GLY B 161 REMARK 465 SER B 162 REMARK 465 THR B 341 REMARK 465 GLN B 342 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 551 O HOH B 597 2.07 REMARK 500 O HOH B 591 O HOH B 618 2.07 REMARK 500 OP2 DC D 18 O HOH D 101 2.09 REMARK 500 O HOH A 615 O HOH A 635 2.10 REMARK 500 O HOH D 130 O HOH D 144 2.12 REMARK 500 OP1 DT D 11 O HOH D 102 2.12 REMARK 500 O HOH D 104 O HOH D 156 2.14 REMARK 500 OP2 DG G 13 O HOH G 101 2.14 REMARK 500 O HOH A 571 O HOH D 134 2.15 REMARK 500 O HOH A 611 O HOH A 613 2.15 REMARK 500 O HOH B 588 O HOH B 607 2.15 REMARK 500 O SER B 209 O HOH B 501 2.16 REMARK 500 O HOH A 628 O HOH A 640 2.16 REMARK 500 O VAL A 182 O HOH A 501 2.18 REMARK 500 O HOH B 579 O HOH B 598 2.18 REMARK 500 N GLY A 165 O HOH A 502 2.18 REMARK 500 O ILE A 253 OH TYR A 286 2.19 REMARK 500 O HOH A 529 O HOH A 616 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 239 45.74 -159.88 REMARK 500 HIS A 258 112.46 70.84 REMARK 500 GLU A 299 -66.64 -94.52 REMARK 500 MET B 164 162.54 65.36 REMARK 500 HIS B 258 111.40 71.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 620 DISTANCE = 6.25 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 319 SG REMARK 620 2 CYS A 322 SG 114.6 REMARK 620 3 HIS A 335 NE2 99.0 105.5 REMARK 620 4 HIS A 339 NE2 102.5 127.2 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 319 SG REMARK 620 2 CYS B 322 SG 114.9 REMARK 620 3 HIS B 335 NE2 104.5 98.0 REMARK 620 4 HIS B 339 NE2 95.0 138.5 101.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BME A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BME B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NDF RELATED DB: PDB REMARK 900 4NDF CONTAINS APTX BOUND TO A DIFFERENT RNA/DNA DBREF 6CVO A 165 342 UNP Q7Z2E3 APTX_HUMAN 179 356 DBREF 6CVO D 1 22 PDB 6CVO 6CVO 1 22 DBREF 6CVO B 165 342 UNP Q7Z2E3 APTX_HUMAN 179 356 DBREF 6CVO G 1 22 PDB 6CVO 6CVO 1 22 DBREF 6CVO E 1 6 PDB 6CVO 6CVO 1 6 DBREF 6CVO H 1 6 PDB 6CVO 6CVO 1 6 SEQADV 6CVO GLY A 161 UNP Q7Z2E3 EXPRESSION TAG SEQADV 6CVO SER A 162 UNP Q7Z2E3 EXPRESSION TAG SEQADV 6CVO HIS A 163 UNP Q7Z2E3 EXPRESSION TAG SEQADV 6CVO MET A 164 UNP Q7Z2E3 EXPRESSION TAG SEQADV 6CVO GLY B 161 UNP Q7Z2E3 EXPRESSION TAG SEQADV 6CVO SER B 162 UNP Q7Z2E3 EXPRESSION TAG SEQADV 6CVO HIS B 163 UNP Q7Z2E3 EXPRESSION TAG SEQADV 6CVO MET B 164 UNP Q7Z2E3 EXPRESSION TAG SEQRES 1 A 182 GLY SER HIS MET GLY HIS TRP SER GLN GLY LEU LYS ILE SEQRES 2 A 182 SER MET GLN ASP PRO LYS MET GLN VAL TYR LYS ASP GLU SEQRES 3 A 182 GLN VAL VAL VAL ILE LYS ASP LYS TYR PRO LYS ALA ARG SEQRES 4 A 182 TYR HIS TRP LEU VAL LEU PRO TRP THR SER ILE SER SER SEQRES 5 A 182 LEU LYS ALA VAL ALA ARG GLU HIS LEU GLU LEU LEU LYS SEQRES 6 A 182 HIS MET HIS THR VAL GLY GLU LYS VAL ILE VAL ASP PHE SEQRES 7 A 182 ALA GLY SER SER LYS LEU ARG PHE ARG LEU GLY TYR HIS SEQRES 8 A 182 ALA ILE PRO SER MET SER HIS VAL HIS LEU HIS VAL ILE SEQRES 9 A 182 SER GLN ASP PHE ASP SER PRO CYS LEU LYS ASN LYS LYS SEQRES 10 A 182 HIS TRP ASN SER PHE ASN THR GLU TYR PHE LEU GLU SER SEQRES 11 A 182 GLN ALA VAL ILE GLU MET VAL GLN GLU ALA GLY ARG VAL SEQRES 12 A 182 THR VAL ARG ASP GLY MET PRO GLU LEU LEU LYS LEU PRO SEQRES 13 A 182 LEU ARG CYS HIS GLU CYS GLN GLN LEU LEU PRO SER ILE SEQRES 14 A 182 PRO GLN LEU LYS GLU HIS LEU ARG LYS HIS TRP THR GLN SEQRES 1 D 22 G DT DT DC DT DA DT DA DT DA DT DA DG SEQRES 2 D 22 DA DA DC DG DC DT DG DT DT SEQRES 1 B 182 GLY SER HIS MET GLY HIS TRP SER GLN GLY LEU LYS ILE SEQRES 2 B 182 SER MET GLN ASP PRO LYS MET GLN VAL TYR LYS ASP GLU SEQRES 3 B 182 GLN VAL VAL VAL ILE LYS ASP LYS TYR PRO LYS ALA ARG SEQRES 4 B 182 TYR HIS TRP LEU VAL LEU PRO TRP THR SER ILE SER SER SEQRES 5 B 182 LEU LYS ALA VAL ALA ARG GLU HIS LEU GLU LEU LEU LYS SEQRES 6 B 182 HIS MET HIS THR VAL GLY GLU LYS VAL ILE VAL ASP PHE SEQRES 7 B 182 ALA GLY SER SER LYS LEU ARG PHE ARG LEU GLY TYR HIS SEQRES 8 B 182 ALA ILE PRO SER MET SER HIS VAL HIS LEU HIS VAL ILE SEQRES 9 B 182 SER GLN ASP PHE ASP SER PRO CYS LEU LYS ASN LYS LYS SEQRES 10 B 182 HIS TRP ASN SER PHE ASN THR GLU TYR PHE LEU GLU SER SEQRES 11 B 182 GLN ALA VAL ILE GLU MET VAL GLN GLU ALA GLY ARG VAL SEQRES 12 B 182 THR VAL ARG ASP GLY MET PRO GLU LEU LEU LYS LEU PRO SEQRES 13 B 182 LEU ARG CYS HIS GLU CYS GLN GLN LEU LEU PRO SER ILE SEQRES 14 B 182 PRO GLN LEU LYS GLU HIS LEU ARG LYS HIS TRP THR GLN SEQRES 1 G 22 G DT DT DC DT DA DT DA DT DA DT DA DG SEQRES 2 G 22 DA DA DC DG DC DT DG DT DT SEQRES 1 E 6 DA DA DC DA DG DC SEQRES 1 H 6 DA DA DC DA DG DC HET AMP A 401 31 HET ZN A 402 1 HET BME A 403 9 HET AMP B 401 31 HET ZN B 402 1 HET BME B 403 9 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM ZN ZINC ION HETNAM BME BETA-MERCAPTOETHANOL FORMUL 7 AMP 2(C10 H14 N5 O7 P) FORMUL 8 ZN 2(ZN 2+) FORMUL 9 BME 2(C2 H6 O S) FORMUL 13 HOH *404(H2 O) HELIX 1 AA1 GLY A 165 SER A 168 5 4 HELIX 2 AA2 GLN A 169 GLN A 176 1 8 HELIX 3 AA3 ASP A 177 GLN A 181 5 5 HELIX 4 AA4 SER A 212 VAL A 216 5 5 HELIX 5 AA5 ALA A 217 GLU A 219 5 3 HELIX 6 AA6 HIS A 220 GLY A 240 1 21 HELIX 7 AA7 ASN A 275 THR A 284 1 10 HELIX 8 AA8 SER A 290 ALA A 300 1 11 HELIX 9 AA9 GLY A 308 LEU A 313 1 6 HELIX 10 AB1 SER A 328 ARG A 337 1 10 HELIX 11 AB2 GLY B 165 SER B 168 5 4 HELIX 12 AB3 GLN B 169 GLN B 176 1 8 HELIX 13 AB4 ASP B 177 LYS B 179 5 3 HELIX 14 AB5 SER B 212 VAL B 216 5 5 HELIX 15 AB6 ALA B 217 GLU B 219 5 3 HELIX 16 AB7 HIS B 220 GLY B 240 1 21 HELIX 17 AB8 SER B 241 LYS B 243 5 3 HELIX 18 AB9 ASN B 275 THR B 284 1 10 HELIX 19 AC1 SER B 290 ALA B 300 1 11 HELIX 20 AC2 GLY B 308 LEU B 313 1 6 HELIX 21 AC3 SER B 328 ARG B 337 1 10 HELIX 22 AC4 LYS B 338 TRP B 340 5 3 SHEET 1 AA1 6 TYR A 183 LYS A 184 0 SHEET 2 AA1 6 VAL A 188 LYS A 192 -1 O VAL A 190 N TYR A 183 SHEET 3 AA1 6 HIS A 201 PRO A 206 -1 O LEU A 205 N VAL A 189 SHEET 4 AA1 6 LEU A 261 SER A 265 -1 O VAL A 263 N TRP A 202 SHEET 5 AA1 6 PHE A 246 HIS A 251 -1 N GLY A 249 O HIS A 262 SHEET 6 AA1 6 PHE A 287 GLU A 289 -1 O LEU A 288 N TYR A 250 SHEET 1 AA2 2 LEU A 317 ARG A 318 0 SHEET 2 AA2 2 LEU A 325 LEU A 326 -1 O LEU A 326 N LEU A 317 SHEET 1 AA3 6 GLN B 181 LYS B 184 0 SHEET 2 AA3 6 VAL B 188 LYS B 192 -1 O VAL B 190 N VAL B 182 SHEET 3 AA3 6 HIS B 201 PRO B 206 -1 O LEU B 205 N VAL B 189 SHEET 4 AA3 6 LEU B 261 SER B 265 -1 O VAL B 263 N TRP B 202 SHEET 5 AA3 6 PHE B 246 HIS B 251 -1 N GLY B 249 O HIS B 262 SHEET 6 AA3 6 PHE B 287 GLU B 289 -1 O LEU B 288 N TYR B 250 SHEET 1 AA4 2 LEU B 317 ARG B 318 0 SHEET 2 AA4 2 LEU B 325 LEU B 326 -1 O LEU B 326 N LEU B 317 LINK SG CYS A 319 ZN ZN A 402 1555 1555 2.44 LINK SG CYS A 322 ZN ZN A 402 1555 1555 2.19 LINK NE2 HIS A 335 ZN ZN A 402 1555 1555 2.00 LINK NE2 HIS A 339 ZN ZN A 402 1555 1555 2.08 LINK SG CYS B 319 ZN ZN B 402 1555 1555 2.28 LINK SG CYS B 322 ZN ZN B 402 1555 1555 2.23 LINK NE2 HIS B 335 ZN ZN B 402 1555 1555 2.03 LINK NE2 HIS B 339 ZN ZN B 402 1555 1555 2.00 SITE 1 AC1 20 LEU A 171 SER A 174 ILE A 191 LYS A 192 SITE 2 AC1 20 ASP A 193 LYS A 194 TYR A 195 LYS A 197 SITE 3 AC1 20 HIS A 201 LEU A 203 HIS A 251 PRO A 254 SITE 4 AC1 20 SER A 255 MET A 256 HIS A 260 HIS A 262 SITE 5 AC1 20 HOH A 505 HOH A 586 G D 1 HOH D 106 SITE 1 AC2 4 CYS A 319 CYS A 322 HIS A 335 HIS A 339 SITE 1 AC3 6 TYR A 195 CYS A 272 LYS A 274 HOH A 523 SITE 2 AC3 6 DT D 2 DT D 3 SITE 1 AC4 18 LEU B 171 SER B 174 ILE B 191 LYS B 192 SITE 2 AC4 18 ASP B 193 LYS B 194 TYR B 195 LEU B 203 SITE 3 AC4 18 HIS B 251 PRO B 254 SER B 255 MET B 256 SITE 4 AC4 18 HIS B 260 HIS B 262 HOH B 522 HOH B 526 SITE 5 AC4 18 HOH B 539 G G 1 SITE 1 AC5 4 CYS B 319 CYS B 322 HIS B 335 HIS B 339 SITE 1 AC6 5 TYR B 195 CYS B 272 LYS B 274 HOH B 504 SITE 2 AC6 5 DT G 3 CRYST1 58.913 72.547 147.164 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016974 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013784 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006795 0.00000