HEADER TRANSFERASE 29-MAR-18 6CW5 TITLE CRYSTAL STRUCTURE OF RIBOKINASE FROM CRYPTOCOCCUS NEOFORMANS VAR. TITLE 2 GRUBII SEROTYPE A COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOKINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CRNEC.01141.A.B12; COMPND 5 SYNONYM: RK; COMPND 6 EC: 2.7.1.15; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRYPTOCOCCUS NEOFORMANS VAR. GRUBII SEROTYPE A SOURCE 3 (STRAIN H99 / ATCC 208821 / CBS 10515 / FGSC 9487); SOURCE 4 ORGANISM_COMMON: FILOBASIDIELLA NEOFORMANS VAR. GRUBII; SOURCE 5 ORGANISM_TAXID: 235443; SOURCE 6 STRAIN: H99 / ATCC 208821 / CBS 10515 / FGSC 9487; SOURCE 7 ATCC: 208821; SOURCE 8 GENE: CNAG_02296; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: CRNEC.01141.A.B12 KEYWDS SSGCID, CRYPTOCOCCUS NEOFORMANS, RIBOKINASE, PHOSPHORYLATION, ATP, KEYWDS 2 ADP, D-RIBOSE, D-RIBOSE 5-PHOSPHATE, STRUCTURAL GENOMICS, SEATTLE KEYWDS 3 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 04-OCT-23 6CW5 1 REMARK REVDAT 1 18-APR-18 6CW5 0 JRNL AUTH J.ABENDROTH,D.M.DRANOW,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF RIBOKINASE FROM CRYPTOCOCCUS NEOFORMANS JRNL TITL 2 VAR. GRUBII SEROTYPE A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28260 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1965 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.8872 - 4.3361 1.00 2008 147 0.1513 0.1844 REMARK 3 2 4.3361 - 3.4426 1.00 1898 144 0.1294 0.1431 REMARK 3 3 3.4426 - 3.0076 1.00 1894 146 0.1467 0.2138 REMARK 3 4 3.0076 - 2.7328 1.00 1884 143 0.1564 0.2044 REMARK 3 5 2.7328 - 2.5369 1.00 1872 140 0.1635 0.2028 REMARK 3 6 2.5369 - 2.3874 1.00 1875 130 0.1553 0.2075 REMARK 3 7 2.3874 - 2.2679 1.00 1902 108 0.1525 0.1918 REMARK 3 8 2.2679 - 2.1692 1.00 1861 148 0.1581 0.2140 REMARK 3 9 2.1692 - 2.0857 1.00 1875 126 0.1670 0.2314 REMARK 3 10 2.0857 - 2.0137 1.00 1855 145 0.1578 0.2022 REMARK 3 11 2.0137 - 1.9507 1.00 1828 151 0.1677 0.2358 REMARK 3 12 1.9507 - 1.8950 1.00 1849 156 0.1848 0.2434 REMARK 3 13 1.8950 - 1.8451 1.00 1849 127 0.1885 0.2430 REMARK 3 14 1.8451 - 1.8001 1.00 1845 154 0.1910 0.2684 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.3103 7.2249 8.3040 REMARK 3 T TENSOR REMARK 3 T11: 0.1708 T22: 0.2016 REMARK 3 T33: 0.1401 T12: 0.0045 REMARK 3 T13: -0.0192 T23: -0.0412 REMARK 3 L TENSOR REMARK 3 L11: 1.4611 L22: 8.5205 REMARK 3 L33: 0.8008 L12: 1.7640 REMARK 3 L13: 0.3695 L23: 1.8310 REMARK 3 S TENSOR REMARK 3 S11: -0.1298 S12: 0.2303 S13: -0.1466 REMARK 3 S21: -0.6206 S22: 0.1129 S23: -0.0226 REMARK 3 S31: -0.0600 S32: 0.0082 S33: 0.0055 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 75.0258 18.4031 9.6525 REMARK 3 T TENSOR REMARK 3 T11: 0.1422 T22: 0.2320 REMARK 3 T33: 0.2181 T12: -0.0002 REMARK 3 T13: 0.0580 T23: -0.0452 REMARK 3 L TENSOR REMARK 3 L11: 3.5488 L22: 5.0264 REMARK 3 L33: 3.8890 L12: -0.7685 REMARK 3 L13: 0.3821 L23: -1.2707 REMARK 3 S TENSOR REMARK 3 S11: -0.0329 S12: 0.2874 S13: -0.1054 REMARK 3 S21: -0.2550 S22: -0.0395 S23: -0.6242 REMARK 3 S31: -0.0078 S32: 0.2769 S33: 0.0797 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.6257 23.1260 16.6324 REMARK 3 T TENSOR REMARK 3 T11: 0.1487 T22: 0.1269 REMARK 3 T33: 0.1207 T12: -0.0005 REMARK 3 T13: -0.0029 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 1.5716 L22: 1.3068 REMARK 3 L33: 0.9414 L12: -0.1498 REMARK 3 L13: 0.3225 L23: -0.1130 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: 0.1072 S13: 0.0114 REMARK 3 S21: -0.0320 S22: 0.0120 S23: -0.0590 REMARK 3 S31: -0.0626 S32: 0.0836 S33: -0.0054 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.2029 27.3376 11.1518 REMARK 3 T TENSOR REMARK 3 T11: 0.2008 T22: 0.1554 REMARK 3 T33: 0.1927 T12: 0.0076 REMARK 3 T13: -0.0384 T23: 0.0444 REMARK 3 L TENSOR REMARK 3 L11: 4.5826 L22: 2.5085 REMARK 3 L33: 7.3798 L12: -0.8858 REMARK 3 L13: 0.0808 L23: -0.7587 REMARK 3 S TENSOR REMARK 3 S11: 0.0578 S12: 0.2396 S13: -0.1151 REMARK 3 S21: -0.1353 S22: 0.0702 S23: 0.3081 REMARK 3 S31: 0.3645 S32: -0.4484 S33: -0.0622 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 239 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.8653 26.0086 -0.5342 REMARK 3 T TENSOR REMARK 3 T11: 0.3525 T22: 0.3063 REMARK 3 T33: 0.2223 T12: 0.0560 REMARK 3 T13: -0.0558 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 3.9318 L22: 0.3646 REMARK 3 L33: 2.8291 L12: -0.2418 REMARK 3 L13: -0.8647 L23: -0.5545 REMARK 3 S TENSOR REMARK 3 S11: 0.1297 S12: 0.3218 S13: -0.3333 REMARK 3 S21: -0.2346 S22: -0.1086 S23: 0.0156 REMARK 3 S31: 0.4033 S32: 0.2761 S33: -0.0205 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 289 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.6225 21.8259 -4.8940 REMARK 3 T TENSOR REMARK 3 T11: 0.6378 T22: 0.5674 REMARK 3 T33: 0.5657 T12: 0.0720 REMARK 3 T13: -0.0494 T23: -0.0837 REMARK 3 L TENSOR REMARK 3 L11: 5.7517 L22: 4.3219 REMARK 3 L33: 3.1423 L12: -2.9195 REMARK 3 L13: 1.0670 L23: -1.1113 REMARK 3 S TENSOR REMARK 3 S11: 0.2827 S12: 0.6057 S13: -0.8061 REMARK 3 S21: -0.1209 S22: -0.2514 S23: -0.2152 REMARK 3 S31: 0.6715 S32: 0.1074 S33: -0.0115 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CW5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000233600. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28288 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 35.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.857 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.08 REMARK 200 R MERGE FOR SHELL (I) : 0.42400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA, PARROT REMARK 200 STARTING MODEL: PDB ENTRY 4XDA, PER MORDA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MOLECULAR DIMENSIONS MORPHEUS SCREEN, REMARK 280 E9: 10% PEG 20.000, 20% PEG MME 550: 30MM OF EACH REMARK 280 DIETHYLENEGLYCOL, TRIETHYLENEGLYCOL, TETRAETHYLENEGLYCOL, REMARK 280 PENTAETHYLENEGLYCOL: 100MM BICINE/TRIZMA BASE PH 8.5: REMARK 280 CRNEC.01141.A.B12.PW38396 AT 19.46MG/ML: CRYO: DIRECT: TRAY REMARK 280 297317E9: PUCK RDZ7-2:, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.08667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.04333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.04333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 54.08667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 120.01500 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 69.29069 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 54.08667 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 569 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 585 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 601 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 615 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 ALA A 318 REMARK 465 VAL A 319 REMARK 465 LYS A 320 REMARK 465 GLU A 321 REMARK 465 ARG A 322 REMARK 465 LEU A 323 REMARK 465 ALA A 324 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 53 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 ASP A 103 CG OD1 OD2 REMARK 470 GLU A 105 CG CD OE1 OE2 REMARK 470 LYS A 208 CG CD CE NZ REMARK 470 GLU A 209 CG CD OE1 OE2 REMARK 470 ASP A 210 CG OD1 OD2 REMARK 470 LYS A 242 CG CD CE NZ REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 LEU A 261 CG CD1 CD2 REMARK 470 GLN A 262 CG CD OE1 NE2 REMARK 470 ASN A 263 CG OD1 ND2 REMARK 470 VAL A 265 CG1 CG2 REMARK 470 LYS A 266 CG CD CE NZ REMARK 470 LYS A 294 CG CD CE NZ REMARK 470 VAL A 304 CG1 CG2 REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 GLU A 311 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 746 O HOH A 746 6765 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 136 -142.80 -134.82 REMARK 500 PHE A 229 -154.06 -96.22 REMARK 500 LYS A 266 -68.52 -98.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 401 DBREF 6CW5 A 1 324 UNP J9VQ51 J9VQ51_CRYNH 1 324 SEQADV 6CW5 MET A -7 UNP J9VQ51 INITIATING METHIONINE SEQADV 6CW5 ALA A -6 UNP J9VQ51 EXPRESSION TAG SEQADV 6CW5 HIS A -5 UNP J9VQ51 EXPRESSION TAG SEQADV 6CW5 HIS A -4 UNP J9VQ51 EXPRESSION TAG SEQADV 6CW5 HIS A -3 UNP J9VQ51 EXPRESSION TAG SEQADV 6CW5 HIS A -2 UNP J9VQ51 EXPRESSION TAG SEQADV 6CW5 HIS A -1 UNP J9VQ51 EXPRESSION TAG SEQADV 6CW5 HIS A 0 UNP J9VQ51 EXPRESSION TAG SEQRES 1 A 332 MET ALA HIS HIS HIS HIS HIS HIS MET SER THR SER SER SEQRES 2 A 332 ARG CYS LEU VAL ARG GLY SER VAL ASN ILE ASP GLU PHE SEQRES 3 A 332 PHE HIS LEU PRO HIS ILE VAL ARG PRO GLY GLU THR ILE SEQRES 4 A 332 SER SER THR GLY LEU THR LYS ARG ALA GLY GLY LYS GLY SEQRES 5 A 332 ALA ASN GLN ALA PHE ALA VAL ALA ARG ALA GLY GLY GLN SEQRES 6 A 332 VAL GLU LEU ASP GLY ALA ILE GLY ASP ASP GLY ILE TRP SEQRES 7 A 332 VAL LYS GLU MET LEU GLU SER ALA GLY VAL GLY THR ASP SEQRES 8 A 332 LYS LEU LYS ILE VAL LYS ASP GLU VAL THR GLY ARG ALA SEQRES 9 A 332 VAL ILE GLN SER ALA ALA ASP GLY GLU ASN SER ILE VAL SEQRES 10 A 332 LEU HIS ALA GLY ALA ASN TYR TYR LEU PRO SER PRO THR SEQRES 11 A 332 PRO THR THR SER LEU ALA THR TYR THR HIS LEU LEU VAL SEQRES 12 A 332 GLN ASN GLU VAL PRO LEU SER SER THR LEU ALA TYR LEU SEQRES 13 A 332 THR ALA ALA GLY GLN SER SER PRO PRO LEU THR SER VAL SEQRES 14 A 332 PHE ASN PRO SER PRO MET LEU THR PRO ALA GLN LEU ARG SEQRES 15 A 332 GLU PHE PRO TRP LYS HIS LEU SER TRP LEU ILE VAL ASN SEQRES 16 A 332 GLU GLY GLU LEU GLY ASP LEU LEU LEU ALA PHE GLY SER SEQRES 17 A 332 SER ALA ASN PRO GLY GLU ALA LYS GLU ASP GLU LEU GLN SEQRES 18 A 332 ALA LYS ALA SER ALA GLY ILE LEU GLU LEU HIS GLU ASN SEQRES 19 A 332 ASP TYR PHE SER LYS ASN VAL GLY ILE ILE CYS THR LEU SEQRES 20 A 332 GLY ALA LYS GLY ILE LEU CYS TYR GLU PRO GLY LYS GLU SEQRES 21 A 332 VAL GLY TYR LEU PRO ALA ALA LYS LEU GLN ASN PRO VAL SEQRES 22 A 332 LYS ASP THR THR GLY ALA GLY ASP CYS PHE ALA GLY TYR SEQRES 23 A 332 PHE VAL ALA GLY LEU MET SER GLY LYS SER LEU GLN ASP SEQRES 24 A 332 ALA LEU LYS THR CYS LEU VAL ALA CYS GLY ILE CYS VAL SEQRES 25 A 332 GLU ASN GLU GLY ALA MET GLU SER VAL PRO THR LEU ASN SEQRES 26 A 332 ALA VAL LYS GLU ARG LEU ALA HET GOL A 400 6 HET PO4 A 401 5 HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 PO4 O4 P 3- FORMUL 4 HOH *275(H2 O) HELIX 1 AA1 GLY A 42 ALA A 54 1 13 HELIX 2 AA2 GLY A 68 ALA A 78 1 11 HELIX 3 AA3 ALA A 112 TYR A 117 5 6 HELIX 4 AA4 PRO A 140 SER A 154 1 15 HELIX 5 AA5 THR A 169 PHE A 176 1 8 HELIX 6 AA6 PRO A 177 LEU A 181 5 5 HELIX 7 AA7 GLU A 188 PHE A 198 1 11 HELIX 8 AA8 ASN A 203 ALA A 207 5 5 HELIX 9 AA9 GLU A 211 ASN A 226 1 16 HELIX 10 AB1 GLY A 240 LYS A 242 5 3 HELIX 11 AB2 GLY A 270 SER A 285 1 16 HELIX 12 AB3 SER A 288 VAL A 304 1 17 SHEET 1 AA1 9 LEU A 85 VAL A 88 0 SHEET 2 AA1 9 VAL A 58 GLY A 65 1 N ILE A 64 O LYS A 86 SHEET 3 AA1 9 CYS A 7 ARG A 10 1 N VAL A 9 O ASP A 61 SHEET 4 AA1 9 HIS A 132 VAL A 135 1 O HIS A 132 N LEU A 8 SHEET 5 AA1 9 THR A 159 PHE A 162 1 O VAL A 161 N LEU A 133 SHEET 6 AA1 9 TRP A 183 ASN A 187 1 O ILE A 185 N PHE A 162 SHEET 7 AA1 9 GLY A 234 THR A 238 1 O THR A 238 N VAL A 186 SHEET 8 AA1 9 ILE A 244 TYR A 247 -1 O TYR A 247 N ILE A 235 SHEET 9 AA1 9 GLY A 254 LEU A 256 -1 O GLY A 254 N CYS A 246 SHEET 1 AA2 4 GLY A 35 GLY A 41 0 SHEET 2 AA2 4 ASN A 14 LEU A 21 -1 N PHE A 18 O THR A 37 SHEET 3 AA2 4 GLY A 94 ALA A 101 1 O ILE A 98 N PHE A 19 SHEET 4 AA2 4 SER A 107 HIS A 111 -1 O VAL A 109 N VAL A 97 CISPEP 1 SER A 120 PRO A 121 0 -8.75 CISPEP 2 SER A 155 PRO A 156 0 -5.58 CISPEP 3 SER A 165 PRO A 166 0 -4.85 SITE 1 AC1 9 ASN A 14 ASP A 16 GLY A 41 GLY A 42 SITE 2 AC1 9 LYS A 43 ASN A 46 ALA A 96 GLU A 138 SITE 3 AC1 9 ALA A 309 SITE 1 AC2 3 PRO A 123 HOH A 554 HOH A 561 CRYST1 80.010 80.010 81.130 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012498 0.007216 0.000000 0.00000 SCALE2 0.000000 0.014432 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012326 0.00000