HEADER IMMUNE SYSTEM 30-MAR-18 6CW9 TITLE STRUCTURE OF ALPHA-GC[8,16P] BOUND BY CD1D AND IN COMPLEX WITH THE TITLE 2 VA14VB8.2 TCR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHIMERIC T CELL ANTIGEN RECEPTOR ALPHA CHAIN. VA14,VA24, COMPND 3 JA18; COMPND 4 CHAIN: C; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CHIMERIC T CELL ANTIGEN RECEPTOR BETA CHAIN VB8.2, VB11; COMPND 8 CHAIN: D; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: ANTIGEN-PRESENTING GLYCOPROTEIN CD1D1; COMPND 12 CHAIN: A; COMPND 13 SYNONYM: MCG3074,ISOFORM CRA_A; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 17 CHAIN: B; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET22B+; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET22B+; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 17 ORGANISM_COMMON: MOUSE; SOURCE 18 ORGANISM_TAXID: 10090; SOURCE 19 GENE: CD1D1, MCG_3074; SOURCE 20 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PBACPHP10; SOURCE 23 MOL_ID: 4; SOURCE 24 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 25 ORGANISM_COMMON: MOUSE; SOURCE 26 ORGANISM_TAXID: 10090; SOURCE 27 GENE: B2M; SOURCE 28 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 29 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS IMMUNE SYSTEM, ANTIGEN-PRESENTATION, TCR, MHC-FOLD EXPDTA X-RAY DIFFRACTION AUTHOR J.WANG,D.ZAJONC REVDAT 4 04-OCT-23 6CW9 1 HETSYN LINK REVDAT 3 29-JUL-20 6CW9 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 16-OCT-19 6CW9 1 JRNL REVDAT 1 03-APR-19 6CW9 0 JRNL AUTH J.WANG,J.GUILLAUME,J.JANSSENS,S.G.REMESH,G.YING,A.BITRA, JRNL AUTH 2 S.VAN CALENBERGH,D.M.ZAJONC JRNL TITL A MOLECULAR SWITCH IN MOUSE CD1D MODULATES NATURAL KILLER T JRNL TITL 2 CELL ACTIVATION BY ALPHA-GALACTOSYLSPHINGAMIDES. JRNL REF J.BIOL.CHEM. V. 294 14345 2019 JRNL REFN ESSN 1083-351X JRNL PMID 31391251 JRNL DOI 10.1074/JBC.RA119.009963 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 73728 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3899 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5399 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 270 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6370 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 144 REMARK 3 SOLVENT ATOMS : 441 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.590 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6697 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5872 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9120 ; 1.357 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13679 ; 0.868 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 809 ; 6.222 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 305 ;34.715 ;24.262 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1022 ;12.689 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;18.465 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1005 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7380 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1373 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6CW9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233604. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77934 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.56600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2Q7Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.06M CITRIC ACID, 0.04M BIS-TRIS REMARK 280 PROPANE, 16% PEG 3350, PH 4.1, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.55650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.55650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.61150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 96.01300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.61150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 96.01300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.55650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.61150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 96.01300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 75.55650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.61150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 96.01300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN C 9 CG CD OE1 NE2 REMARK 470 LYS C 42 CG CD CE NZ REMARK 470 GLN C 117 CG CD OE1 NE2 REMARK 470 SER C 132 OG REMARK 470 LYS C 134 CG CD CE NZ REMARK 470 GLN C 145 CG CD OE1 NE2 REMARK 470 GLN C 150 CG CD OE1 NE2 REMARK 470 LYS C 152 CG CD CE NZ REMARK 470 LYS C 182 CG CD CE NZ REMARK 470 SER C 183 OG REMARK 470 ASP C 184 CG OD1 OD2 REMARK 470 LYS D 129 CG CD CE NZ REMARK 470 ASN D 181 CG OD1 ND2 REMARK 470 GLU D 216 CG CD OE1 OE2 REMARK 470 GLU D 219 CG CD OE1 OE2 REMARK 470 ASP D 223 CG OD1 OD2 REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 ARG A 21 CG CD NE CZ NH1 NH2 REMARK 470 SER A 198 OG REMARK 470 SER A 199 OG REMARK 470 HIS A 201 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 230 CG CD OE1 NE2 REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 LYS B 44 CG CD CE NZ REMARK 470 LYS B 48 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS C 42 -162.04 -111.52 REMARK 500 ALA C 86 172.94 175.43 REMARK 500 ASP C 120 55.22 -152.27 REMARK 500 ASP D 95 -150.22 -96.15 REMARK 500 PRO D 149 -161.35 -74.67 REMARK 500 LYS B 48 36.90 -94.89 REMARK 500 TRP B 60 -2.45 78.32 REMARK 500 REMARK 500 REMARK: NULL DBREF 6CW9 C 2 204 PDB 6CW9 6CW9 2 204 DBREF 6CW9 D 2 240 PDB 6CW9 6CW9 2 240 DBREF1 6CW9 A 6 279 UNP A0A0R4J090_MOUSE DBREF2 6CW9 A A0A0R4J090 24 297 DBREF 6CW9 B 2 98 UNP P01887 B2MG_MOUSE 22 118 SEQRES 1 C 203 THR GLN VAL GLU GLN SER PRO GLN SER LEU VAL VAL ARG SEQRES 2 C 203 GLN GLY GLU ASN CYS VAL LEU GLN CYS ASN TYR SER VAL SEQRES 3 C 203 THR PRO ASP ASN HIS LEU ARG TRP PHE LYS GLN ASP THR SEQRES 4 C 203 GLY LYS GLY LEU VAL SER LEU THR VAL LEU VAL ASP GLN SEQRES 5 C 203 LYS ASP LYS THR SER ASN GLY ARG TYR SER ALA THR LEU SEQRES 6 C 203 ASP LYS ASP ALA LYS HIS SER THR LEU HIS ILE THR ALA SEQRES 7 C 203 THR LEU LEU ASP ASP THR ALA THR TYR ILE CYS VAL VAL SEQRES 8 C 203 GLY ASP ARG GLY SER ALA LEU GLY ARG LEU HIS PHE GLY SEQRES 9 C 203 ALA GLY THR GLN LEU ILE VAL ILE PRO ASP ILE GLN ASN SEQRES 10 C 203 PRO ASP PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SER SEQRES 11 C 203 SER ASP LYS SER VAL CYS LEU PHE THR ASP PHE ASP SER SEQRES 12 C 203 GLN THR ASN VAL SER GLN SER LYS ASP SER ASP VAL TYR SEQRES 13 C 203 ILE THR ASP LYS CYS VAL LEU ASP MET ARG SER MET ASP SEQRES 14 C 203 PHE LYS SER ASN SER ALA VAL ALA TRP SER ASN LYS SER SEQRES 15 C 203 ASP PHE ALA CYS ALA ASN ALA PHE ASN ASN SER ILE ILE SEQRES 16 C 203 PRO GLU ASP THR PHE PHE PRO SER SEQRES 1 D 239 ALA ALA VAL THR GLN SER PRO ARG ASN LYS VAL ALA VAL SEQRES 2 D 239 THR GLY GLY LYS VAL THR LEU SER CYS ASN GLN THR ASN SEQRES 3 D 239 ASN HIS ASN ASN MET TYR TRP TYR ARG GLN ASP THR GLY SEQRES 4 D 239 HIS GLY LEU ARG LEU ILE HIS TYR SER TYR GLY ALA GLY SEQRES 5 D 239 SER THR GLU LYS GLY ASP ILE PRO ASP GLY TYR LYS ALA SEQRES 6 D 239 SER ARG PRO SER GLN GLU ASN PHE SER LEU ILE LEU GLU SEQRES 7 D 239 LEU ALA THR PRO SER GLN THR SER VAL TYR PHE CYS ALA SEQRES 8 D 239 SER GLY ASP GLU GLY TYR THR GLN TYR PHE GLY PRO GLY SEQRES 9 D 239 THR ARG LEU LEU VAL LEU GLU ASP LEU ARG ASN VAL THR SEQRES 10 D 239 PRO PRO LYS VAL SER LEU PHE GLU PRO SER LYS ALA GLU SEQRES 11 D 239 ILE SER HIS THR GLN LYS ALA THR LEU VAL CYS LEU ALA SEQRES 12 D 239 THR GLY PHE TYR PRO ASP HIS VAL GLU LEU SER TRP TRP SEQRES 13 D 239 VAL ASN GLY LYS GLU VAL HIS SER GLY VAL CYS THR ASP SEQRES 14 D 239 PRO GLN PRO LEU LYS GLU GLN PRO ALA LEU ASN ASP SER SEQRES 15 D 239 ARG TYR SER LEU SER SER ARG LEU ARG VAL SER ALA THR SEQRES 16 D 239 PHE TRP GLN ASN PRO ARG ASN HIS PHE ARG CYS GLN VAL SEQRES 17 D 239 GLN PHE TYR GLY LEU SER GLU ASN ASP GLU TRP THR GLN SEQRES 18 D 239 ASP ARG ALA LYS PRO VAL THR GLN ILE VAL SER ALA GLU SEQRES 19 D 239 ALA TRP GLY ARG ALA SEQRES 1 A 274 LYS ASN TYR THR PHE ARG CYS LEU GLN MET SER SER PHE SEQRES 2 A 274 ALA ASN ARG SER TRP SER ARG THR ASP SER VAL VAL TRP SEQRES 3 A 274 LEU GLY ASP LEU GLN THR HIS ARG TRP SER ASN ASP SER SEQRES 4 A 274 ALA THR ILE SER PHE THR LYS PRO TRP SER GLN GLY LYS SEQRES 5 A 274 LEU SER ASN GLN GLN TRP GLU LYS LEU GLN HIS MET PHE SEQRES 6 A 274 GLN VAL TYR ARG VAL SER PHE THR ARG ASP ILE GLN GLU SEQRES 7 A 274 LEU VAL LYS MET MET SER PRO LYS GLU ASP TYR PRO ILE SEQRES 8 A 274 GLU ILE GLN LEU SER ALA GLY CYS GLU MET TYR PRO GLY SEQRES 9 A 274 ASN ALA SER GLU SER PHE LEU HIS VAL ALA PHE GLN GLY SEQRES 10 A 274 LYS TYR VAL VAL ARG PHE TRP GLY THR SER TRP GLN THR SEQRES 11 A 274 VAL PRO GLY ALA PRO SER TRP LEU ASP LEU PRO ILE LYS SEQRES 12 A 274 VAL LEU ASN ALA ASP GLN GLY THR SER ALA THR VAL GLN SEQRES 13 A 274 MET LEU LEU ASN ASP THR CYS PRO LEU PHE VAL ARG GLY SEQRES 14 A 274 LEU LEU GLU ALA GLY LYS SER ASP LEU GLU LYS GLN GLU SEQRES 15 A 274 LYS PRO VAL ALA TRP LEU SER SER VAL PRO SER SER ALA SEQRES 16 A 274 HIS GLY HIS ARG GLN LEU VAL CYS HIS VAL SER GLY PHE SEQRES 17 A 274 TYR PRO LYS PRO VAL TRP VAL MET TRP MET ARG GLY ASP SEQRES 18 A 274 GLN GLU GLN GLN GLY THR HIS ARG GLY ASP PHE LEU PRO SEQRES 19 A 274 ASN ALA ASP GLU THR TRP TYR LEU GLN ALA THR LEU ASP SEQRES 20 A 274 VAL GLU ALA GLY GLU GLU ALA GLY LEU ALA CYS ARG VAL SEQRES 21 A 274 LYS HIS SER SER LEU GLY GLY GLN ASP ILE ILE LEU TYR SEQRES 22 A 274 TRP SEQRES 1 B 97 GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG HIS PRO SEQRES 2 B 97 PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS TYR VAL SEQRES 3 B 97 THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN MET LEU SEQRES 4 B 97 LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SER ASP SEQRES 5 B 97 MET SER PHE SER LYS ASP TRP SER PHE TYR ILE LEU ALA SEQRES 6 B 97 HIS THR GLU PHE THR PRO THR GLU THR ASP THR TYR ALA SEQRES 7 B 97 CYS ARG VAL LYS HIS ALA SER MET ALA GLU PRO LYS THR SEQRES 8 B 97 VAL TYR TRP ASP ARG ASP HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET FUC F 3 10 HET NAG A 301 14 HET PLM A 307 18 HET 7LM A 308 46 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM PLM PALMITIC ACID HETNAM 7LM N-[(2S,3S,4R)-1-(ALPHA-D-GALACTOPYRANOSYLOXY)-3,4- HETNAM 2 7LM DIHYDROXY-16-PHENYLHEXADECAN-2-YL]OCTANAMIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 5 NAG 5(C8 H15 N O6) FORMUL 6 FUC C6 H12 O5 FORMUL 8 PLM C16 H32 O2 FORMUL 9 7LM C36 H63 N O9 FORMUL 10 HOH *441(H2 O) HELIX 1 AA1 LEU C 81 THR C 85 5 5 HELIX 2 AA2 ARG C 167 ASP C 170 5 4 HELIX 3 AA3 ALA C 186 PHE C 191 1 6 HELIX 4 AA4 THR D 82 THR D 86 5 5 HELIX 5 AA5 SER D 128 GLN D 136 1 9 HELIX 6 AA6 ALA D 195 ASN D 200 1 6 HELIX 7 AA7 SER A 59 SER A 89 1 31 HELIX 8 AA8 PRO A 140 TRP A 142 5 3 HELIX 9 AA9 LEU A 143 ASP A 153 1 11 HELIX 10 AB1 ASP A 153 ASP A 166 1 14 HELIX 11 AB2 ASP A 166 GLY A 179 1 14 HELIX 12 AB3 GLY A 179 GLU A 184 1 6 HELIX 13 AB4 HIS A 267 GLY A 271 5 5 SHEET 1 AA1 5 VAL C 4 SER C 7 0 SHEET 2 AA1 5 CYS C 19 TYR C 25 -1 O ASN C 24 N GLU C 5 SHEET 3 AA1 5 HIS C 72 ILE C 77 -1 O LEU C 75 N LEU C 21 SHEET 4 AA1 5 TYR C 62 ASP C 67 -1 N SER C 63 O HIS C 76 SHEET 5 AA1 5 LYS C 54 ASN C 59 -1 N ASP C 55 O LEU C 66 SHEET 1 AA2 5 SER C 10 ARG C 14 0 SHEET 2 AA2 5 THR C 108 ILE C 113 1 O ILE C 113 N VAL C 13 SHEET 3 AA2 5 ALA C 86 GLY C 93 -1 N ALA C 86 O LEU C 110 SHEET 4 AA2 5 HIS C 32 GLN C 38 -1 N GLN C 38 O THR C 87 SHEET 5 AA2 5 LEU C 44 LEU C 50 -1 O LEU C 47 N TRP C 35 SHEET 1 AA3 4 SER C 10 ARG C 14 0 SHEET 2 AA3 4 THR C 108 ILE C 113 1 O ILE C 113 N VAL C 13 SHEET 3 AA3 4 ALA C 86 GLY C 93 -1 N ALA C 86 O LEU C 110 SHEET 4 AA3 4 LEU C 102 PHE C 104 -1 O HIS C 103 N VAL C 92 SHEET 1 AA4 8 VAL C 156 ILE C 158 0 SHEET 2 AA4 8 PHE C 171 SER C 180 -1 O TRP C 179 N TYR C 157 SHEET 3 AA4 8 SER C 135 THR C 140 -1 N CYS C 137 O ALA C 178 SHEET 4 AA4 8 ALA C 122 ASP C 128 -1 N TYR C 124 O LEU C 138 SHEET 5 AA4 8 LYS D 121 GLU D 126 -1 O GLU D 126 N ARG C 127 SHEET 6 AA4 8 LYS D 137 PHE D 147 -1 O VAL D 141 N PHE D 125 SHEET 7 AA4 8 TYR D 185 SER D 194 -1 O LEU D 187 N ALA D 144 SHEET 8 AA4 8 VAL D 167 THR D 169 -1 N CYS D 168 O ARG D 190 SHEET 1 AA5 8 CYS C 162 MET C 166 0 SHEET 2 AA5 8 PHE C 171 SER C 180 -1 O PHE C 171 N MET C 166 SHEET 3 AA5 8 SER C 135 THR C 140 -1 N CYS C 137 O ALA C 178 SHEET 4 AA5 8 ALA C 122 ASP C 128 -1 N TYR C 124 O LEU C 138 SHEET 5 AA5 8 LYS D 121 GLU D 126 -1 O GLU D 126 N ARG C 127 SHEET 6 AA5 8 LYS D 137 PHE D 147 -1 O VAL D 141 N PHE D 125 SHEET 7 AA5 8 TYR D 185 SER D 194 -1 O LEU D 187 N ALA D 144 SHEET 8 AA5 8 LEU D 174 LYS D 175 -1 N LEU D 174 O SER D 186 SHEET 1 AA6 4 THR D 5 SER D 7 0 SHEET 2 AA6 4 VAL D 19 ASN D 24 -1 O SER D 22 N SER D 7 SHEET 3 AA6 4 ASN D 73 LEU D 78 -1 O LEU D 78 N VAL D 19 SHEET 4 AA6 4 LYS D 65 SER D 67 -1 N LYS D 65 O ILE D 77 SHEET 1 AA7 6 ASN D 10 VAL D 14 0 SHEET 2 AA7 6 THR D 106 LEU D 111 1 O LEU D 111 N ALA D 13 SHEET 3 AA7 6 SER D 87 GLY D 94 -1 N TYR D 89 O THR D 106 SHEET 4 AA7 6 ASN D 31 GLN D 37 -1 N TYR D 35 O PHE D 90 SHEET 5 AA7 6 ARG D 44 SER D 49 -1 O ILE D 46 N TRP D 34 SHEET 6 AA7 6 GLU D 56 LYS D 57 -1 O GLU D 56 N TYR D 48 SHEET 1 AA8 4 ASN D 10 VAL D 14 0 SHEET 2 AA8 4 THR D 106 LEU D 111 1 O LEU D 111 N ALA D 13 SHEET 3 AA8 4 SER D 87 GLY D 94 -1 N TYR D 89 O THR D 106 SHEET 4 AA8 4 TYR D 101 PHE D 102 -1 O TYR D 101 N SER D 93 SHEET 1 AA9 4 LYS D 161 VAL D 163 0 SHEET 2 AA9 4 VAL D 152 VAL D 158 -1 N VAL D 158 O LYS D 161 SHEET 3 AA9 4 HIS D 204 PHE D 211 -1 O GLN D 208 N SER D 155 SHEET 4 AA9 4 GLN D 230 TRP D 237 -1 O GLN D 230 N PHE D 211 SHEET 1 AB1 8 SER A 48 PHE A 49 0 SHEET 2 AB1 8 LEU A 35 TRP A 40 -1 N ARG A 39 O SER A 48 SHEET 3 AB1 8 SER A 24 LEU A 32 -1 N SER A 28 O TRP A 40 SHEET 4 AB1 8 TYR A 8 PHE A 18 -1 N LEU A 13 O VAL A 29 SHEET 5 AB1 8 ILE A 96 MET A 106 -1 O ALA A 102 N CYS A 12 SHEET 6 AB1 8 SER A 112 PHE A 120 -1 O HIS A 117 N SER A 101 SHEET 7 AB1 8 LYS A 123 TRP A 129 -1 O VAL A 126 N VAL A 118 SHEET 8 AB1 8 SER A 132 THR A 135 -1 O SER A 132 N TRP A 129 SHEET 1 AB2 4 VAL A 190 PRO A 197 0 SHEET 2 AB2 4 HIS A 203 PHE A 213 -1 O HIS A 209 N TRP A 192 SHEET 3 AB2 4 TRP A 245 GLU A 254 -1 O VAL A 253 N ARG A 204 SHEET 4 AB2 4 HIS A 233 ARG A 234 -1 N HIS A 233 O THR A 250 SHEET 1 AB3 4 VAL A 190 PRO A 197 0 SHEET 2 AB3 4 HIS A 203 PHE A 213 -1 O HIS A 209 N TRP A 192 SHEET 3 AB3 4 TRP A 245 GLU A 254 -1 O VAL A 253 N ARG A 204 SHEET 4 AB3 4 LEU A 238 PRO A 239 -1 N LEU A 238 O TYR A 246 SHEET 1 AB4 4 GLN A 227 GLU A 228 0 SHEET 2 AB4 4 TRP A 219 ARG A 224 -1 N ARG A 224 O GLN A 227 SHEET 3 AB4 4 LEU A 261 LYS A 266 -1 O ALA A 262 N MET A 223 SHEET 4 AB4 4 ILE A 275 TYR A 278 -1 O LEU A 277 N CYS A 263 SHEET 1 AB5 4 GLN B 6 SER B 11 0 SHEET 2 AB5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AB5 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 AB5 4 GLU B 50 MET B 51 -1 N GLU B 50 O HIS B 67 SHEET 1 AB6 4 GLN B 6 SER B 11 0 SHEET 2 AB6 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AB6 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 AB6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AB7 4 LYS B 44 LYS B 45 0 SHEET 2 AB7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O LYS B 44 SHEET 3 AB7 4 TYR B 78 LYS B 83 -1 O ARG B 81 N GLN B 38 SHEET 4 AB7 4 LYS B 91 TYR B 94 -1 O LYS B 91 N VAL B 82 SSBOND 1 CYS C 23 CYS C 90 1555 1555 2.04 SSBOND 2 CYS C 137 CYS C 187 1555 1555 2.05 SSBOND 3 CYS C 162 CYS D 168 1555 1555 2.07 SSBOND 4 CYS D 23 CYS D 91 1555 1555 2.01 SSBOND 5 CYS D 142 CYS D 207 1555 1555 2.01 SSBOND 6 CYS A 104 CYS A 168 1555 1555 2.10 SSBOND 7 CYS A 208 CYS A 263 1555 1555 2.03 SSBOND 8 CYS B 25 CYS B 80 1555 1555 2.04 LINK ND2 ASN A 20 C1 NAG A 301 1555 1555 1.46 LINK ND2 ASN A 42 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN A 165 C1 NAG F 1 1555 1555 1.41 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 LINK O6 NAG F 1 C1 FUC F 3 1555 1555 1.46 CISPEP 1 SER C 7 PRO C 8 0 -11.42 CISPEP 2 THR C 28 PRO C 29 0 -8.86 CISPEP 3 SER D 7 PRO D 8 0 -6.79 CISPEP 4 TYR D 148 PRO D 149 0 -6.82 CISPEP 5 SER A 89 PRO A 90 0 2.55 CISPEP 6 TYR A 94 PRO A 95 0 -0.35 CISPEP 7 TYR A 214 PRO A 215 0 0.51 CISPEP 8 HIS B 31 PRO B 32 0 4.06 CRYST1 79.223 192.026 151.113 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012623 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005208 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006618 0.00000