HEADER OXIDOREDUCTASE 30-MAR-18 6CWA TITLE CRYSTAL STRUCTURE PHGDH IN COMPLEX WITH NADH AND 3-PHOSPHOGLYCERATE AT TITLE 2 1.77 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-3-PHOSPHOGLYCERATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PHGDH; COMPND 5 SYNONYM: 3-PGDH,2-OXOGLUTARATE REDUCTASE,MALATE DEHYDROGENASE; COMPND 6 EC: 1.1.1.95,1.1.1.399,1.1.1.37; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PHGDH, PGDH3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHGDH, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.R.DAVIES,T.E.EDWARDS REVDAT 3 04-OCT-23 6CWA 1 REMARK REVDAT 2 25-SEP-19 6CWA 1 JRNL REVDAT 1 07-AUG-19 6CWA 0 JRNL AUTH H.WEINSTABL,M.TREU,J.RINNENTHAL,S.K.ZAHN,P.ETTMAYER,G.BADER, JRNL AUTH 2 G.DAHMANN,D.KESSLER,K.RUMPEL,N.MISCHERIKOW,F.SAVARESE, JRNL AUTH 3 T.GERSTBERGER,M.MAYER,A.ZOEPHEL,R.SCHNITZER,W.SOMMERGRUBER, JRNL AUTH 4 P.MARTINELLI,H.ARNHOF,B.PERIC-SIMOV,K.S.HOFBAUER,G.GARAVEL, JRNL AUTH 5 Y.SCHERBANTIN,S.MITZNER,T.N.FETT,G.SCHOLZ,J.BRUCHHAUS, JRNL AUTH 6 M.BURKARD,R.KOUSEK,T.CIFTCI,B.SHARPS,A.SCHRENK,C.HARRER, JRNL AUTH 7 D.HAERING,B.WOLKERSTORFER,X.ZHANG,X.LV,A.DU,D.LI,Y.LI, JRNL AUTH 8 J.QUANT,M.PEARSON,D.B.MCCONNELL JRNL TITL INTRACELLULAR TRAPPING OF THE SELECTIVE PHOSPHOGLYCERATE JRNL TITL 2 DEHYDROGENASE (PHGDH) INHIBITORBI-4924DISRUPTS SERINE JRNL TITL 3 BIOSYNTHESIS. JRNL REF J.MED.CHEM. V. 62 7976 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 31365252 JRNL DOI 10.1021/ACS.JMEDCHEM.9B00718 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1702 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 58386 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2904 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): -6.7179 -11.1783 47.4667 REMARK 3 T TENSOR REMARK 3 T11: 0.9837 T22: 0.7870 REMARK 3 T33: 0.5780 T12: -0.0151 REMARK 3 T13: 0.4096 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 2.4904 L22: 1.0858 REMARK 3 L33: 3.3027 L12: -0.4514 REMARK 3 L13: -1.5979 L23: 0.3491 REMARK 3 S TENSOR REMARK 3 S11: -0.2662 S12: -0.5055 S13: -0.5920 REMARK 3 S21: 0.6834 S22: -0.1690 S23: 0.5256 REMARK 3 S31: 0.5230 S32: -0.0612 S33: 0.3582 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): -6.6638 0.6209 44.7023 REMARK 3 T TENSOR REMARK 3 T11: 0.9672 T22: 0.6705 REMARK 3 T33: 0.3548 T12: -0.0049 REMARK 3 T13: 0.1167 T23: -0.2016 REMARK 3 L TENSOR REMARK 3 L11: 2.6636 L22: 4.4586 REMARK 3 L33: 0.4599 L12: -1.9485 REMARK 3 L13: -0.1687 L23: 1.2466 REMARK 3 S TENSOR REMARK 3 S11: 0.0738 S12: -0.3639 S13: -0.0763 REMARK 3 S21: 0.0492 S22: -0.3494 S23: 1.0000 REMARK 3 S31: -1.1483 S32: -0.0883 S33: 0.2879 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 7.3301 -4.4181 19.1066 REMARK 3 T TENSOR REMARK 3 T11: 0.1059 T22: 0.1410 REMARK 3 T33: 0.1431 T12: -0.0067 REMARK 3 T13: 0.0379 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 2.0510 L22: 3.6865 REMARK 3 L33: 0.6711 L12: -0.0294 REMARK 3 L13: -0.1023 L23: 0.2733 REMARK 3 S TENSOR REMARK 3 S11: 0.1075 S12: -0.0247 S13: 0.2935 REMARK 3 S21: -0.2486 S22: -0.0444 S23: -0.2193 REMARK 3 S31: -0.0668 S32: -0.0254 S33: -0.0465 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 13.7521 -30.7042 -11.3486 REMARK 3 T TENSOR REMARK 3 T11: 1.2335 T22: 0.7276 REMARK 3 T33: 0.3064 T12: 0.0237 REMARK 3 T13: 0.0545 T23: -0.1411 REMARK 3 L TENSOR REMARK 3 L11: 2.7298 L22: 0.9313 REMARK 3 L33: 3.8039 L12: -0.5407 REMARK 3 L13: -0.7212 L23: -1.5221 REMARK 3 S TENSOR REMARK 3 S11: 0.0119 S12: 0.7625 S13: -0.2124 REMARK 3 S21: -1.6979 S22: 0.2887 S23: 0.4406 REMARK 3 S31: -0.4179 S32: -0.0862 S33: -0.1859 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 4.7248 -27.5841 15.7570 REMARK 3 T TENSOR REMARK 3 T11: 0.1291 T22: 0.1629 REMARK 3 T33: 0.0964 T12: -0.0002 REMARK 3 T13: -0.0094 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.8319 L22: 3.6551 REMARK 3 L33: 0.3295 L12: 0.3338 REMARK 3 L13: -0.0693 L23: 0.5124 REMARK 3 S TENSOR REMARK 3 S11: 0.0740 S12: 0.0681 S13: -0.2429 REMARK 3 S21: -0.2558 S22: -0.0350 S23: -0.1091 REMARK 3 S31: -0.0215 S32: 0.0095 S33: -0.0105 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CWA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233603. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58407 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 28.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 2.650 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2G76 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM IMIDAZOLE PH 6.5, 20% PEG 3350, REMARK 280 100 MM MAGNESIUM CHLORIDE, 2M NACL, 1MM NADH; SOAK OVERNIGHT IN REMARK 280 CRYSTALLIZATION SOLUTION PLUS 5 MM 3- PHOSPHOGLYCERATE; 20% EG REMARK 280 CRYO, VAPOR DIFFUSION, TEMPERATURE 289K, PH 6.50, VAPOR REMARK 280 DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -12 REMARK 465 GLY A -11 REMARK 465 VAL A -10 REMARK 465 ASP A -9 REMARK 465 LEU A -8 REMARK 465 GLY A -7 REMARK 465 THR A -6 REMARK 465 GLU A -5 REMARK 465 ASN A -4 REMARK 465 LEU A -3 REMARK 465 TYR A -2 REMARK 465 PHE A -1 REMARK 465 GLN A 0 REMARK 465 SER A 1 REMARK 465 MET A 2 REMARK 465 ALA A 3 REMARK 465 ASN A 4 REMARK 465 LEU A 5 REMARK 465 MET A 305 REMARK 465 VAL A 306 REMARK 465 LYS A 307 REMARK 465 GLY A 308 REMARK 465 LYS A 309 REMARK 465 SER A 310 REMARK 465 LEU A 311 REMARK 465 THR A 312 REMARK 465 GLY A 313 REMARK 465 VAL A 314 REMARK 465 SER B -12 REMARK 465 GLY B -11 REMARK 465 VAL B -10 REMARK 465 ASP B -9 REMARK 465 LEU B -8 REMARK 465 GLY B -7 REMARK 465 THR B -6 REMARK 465 GLU B -5 REMARK 465 ASN B -4 REMARK 465 LEU B -3 REMARK 465 TYR B -2 REMARK 465 PHE B -1 REMARK 465 GLN B 0 REMARK 465 SER B 1 REMARK 465 MET B 2 REMARK 465 ALA B 3 REMARK 465 ASN B 4 REMARK 465 LEU B 5 REMARK 465 ASP B 24 REMARK 465 GLY B 25 REMARK 465 GLY B 26 REMARK 465 LEU B 27 REMARK 465 GLN B 28 REMARK 465 VAL B 29 REMARK 465 VAL B 30 REMARK 465 GLU B 31 REMARK 465 LYS B 32 REMARK 465 GLN B 33 REMARK 465 ASN B 34 REMARK 465 LEU B 35 REMARK 465 SER B 36 REMARK 465 LYS B 37 REMARK 465 GLU B 38 REMARK 465 GLU B 39 REMARK 465 LEU B 40 REMARK 465 ILE B 41 REMARK 465 VAL B 303 REMARK 465 ASP B 304 REMARK 465 MET B 305 REMARK 465 VAL B 306 REMARK 465 LYS B 307 REMARK 465 GLY B 308 REMARK 465 LYS B 309 REMARK 465 SER B 310 REMARK 465 LEU B 311 REMARK 465 THR B 312 REMARK 465 GLY B 313 REMARK 465 VAL B 314 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 6 CG CD NE CZ NH1 NH2 REMARK 470 SER A 11 OG REMARK 470 ARG A 19 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 ILE A 21 CG1 CG2 CD1 REMARK 470 ASP A 24 CG OD1 OD2 REMARK 470 LEU A 27 CG CD1 CD2 REMARK 470 GLN A 28 CG CD OE1 NE2 REMARK 470 VAL A 29 CG1 CG2 REMARK 470 VAL A 30 CG1 CG2 REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 GLN A 33 CG CD OE1 NE2 REMARK 470 ASN A 34 CG OD1 ND2 REMARK 470 LEU A 35 CG CD1 CD2 REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 LEU A 40 CG CD1 CD2 REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 LEU A 44 CG CD1 CD2 REMARK 470 GLN A 45 CG CD OE1 NE2 REMARK 470 ASP A 46 CG OD1 OD2 REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 470 THR A 56 OG1 CG2 REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 ASP A 61 CG OD1 OD2 REMARK 470 VAL A 62 CG1 CG2 REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 LEU A 69 CG CD1 CD2 REMARK 470 LEU A 84 CG CD1 CD2 REMARK 470 GLU A 85 CG CD OE1 OE2 REMARK 470 ARG A 89 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 93 CG CD1 CD2 REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 LYS A 135 CG CD CE NZ REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 LYS A 226 CG CD CE NZ REMARK 470 ARG A 267 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 288 CG CD CE NZ REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 ARG B 6 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 7 CG CD CE NZ REMARK 470 LEU B 9 CG CD1 CD2 REMARK 470 ARG B 19 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 20 CG CD CE NZ REMARK 470 ILE B 21 CG1 CG2 CD1 REMARK 470 GLU B 43 CG CD OE1 OE2 REMARK 470 LEU B 44 CG CD1 CD2 REMARK 470 GLN B 45 CG CD OE1 NE2 REMARK 470 ASP B 46 CG OD1 OD2 REMARK 470 GLU B 48 CG CD OE1 OE2 REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 ASP B 61 CG OD1 OD2 REMARK 470 ILE B 63 CG1 CG2 CD1 REMARK 470 GLU B 67 CG CD OE1 OE2 REMARK 470 LYS B 68 CG CD CE NZ REMARK 470 LEU B 69 CG CD1 CD2 REMARK 470 GLN B 70 CG CD OE1 NE2 REMARK 470 ASP B 80 CG OD1 OD2 REMARK 470 GLU B 85 CG CD OE1 OE2 REMARK 470 ARG B 89 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 90 CG CD CE NZ REMARK 470 LEU B 93 CG CD1 CD2 REMARK 470 VAL B 94 CG1 CG2 REMARK 470 LYS B 135 CG CD CE NZ REMARK 470 LYS B 169 CG CD CE NZ REMARK 470 LYS B 226 CG CD CE NZ REMARK 470 ARG B 267 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 288 CG CD CE NZ REMARK 470 GLU B 296 CG CD OE1 OE2 REMARK 470 GLU B 297 CG CD OE1 OE2 REMARK 470 VAL B 300 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 54 O3P 3PG A 1001 2.16 REMARK 500 O HOH B 1182 O HOH B 1250 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 12 -167.05 -124.27 REMARK 500 GLU A 31 62.23 -112.87 REMARK 500 ARG A 53 -107.37 -106.25 REMARK 500 GLU A 133 69.87 -112.74 REMARK 500 HIS A 205 51.89 -143.35 REMARK 500 ALA A 234 -86.58 -108.80 REMARK 500 ASP B 12 -167.37 -124.42 REMARK 500 ARG B 53 -112.23 -106.53 REMARK 500 VAL B 58 72.49 -100.00 REMARK 500 GLU B 133 71.94 -108.63 REMARK 500 HIS B 205 52.39 -144.09 REMARK 500 ALA B 234 -87.16 -110.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3PG A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAI A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3PG B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAI B 1002 DBREF 6CWA A 3 314 UNP O43175 SERA_HUMAN 4 315 DBREF 6CWA B 3 314 UNP O43175 SERA_HUMAN 4 315 SEQADV 6CWA SER A -12 UNP O43175 EXPRESSION TAG SEQADV 6CWA GLY A -11 UNP O43175 EXPRESSION TAG SEQADV 6CWA VAL A -10 UNP O43175 EXPRESSION TAG SEQADV 6CWA ASP A -9 UNP O43175 EXPRESSION TAG SEQADV 6CWA LEU A -8 UNP O43175 EXPRESSION TAG SEQADV 6CWA GLY A -7 UNP O43175 EXPRESSION TAG SEQADV 6CWA THR A -6 UNP O43175 EXPRESSION TAG SEQADV 6CWA GLU A -5 UNP O43175 EXPRESSION TAG SEQADV 6CWA ASN A -4 UNP O43175 EXPRESSION TAG SEQADV 6CWA LEU A -3 UNP O43175 EXPRESSION TAG SEQADV 6CWA TYR A -2 UNP O43175 EXPRESSION TAG SEQADV 6CWA PHE A -1 UNP O43175 EXPRESSION TAG SEQADV 6CWA GLN A 0 UNP O43175 EXPRESSION TAG SEQADV 6CWA SER A 1 UNP O43175 EXPRESSION TAG SEQADV 6CWA MET A 2 UNP O43175 EXPRESSION TAG SEQADV 6CWA SER B -12 UNP O43175 EXPRESSION TAG SEQADV 6CWA GLY B -11 UNP O43175 EXPRESSION TAG SEQADV 6CWA VAL B -10 UNP O43175 EXPRESSION TAG SEQADV 6CWA ASP B -9 UNP O43175 EXPRESSION TAG SEQADV 6CWA LEU B -8 UNP O43175 EXPRESSION TAG SEQADV 6CWA GLY B -7 UNP O43175 EXPRESSION TAG SEQADV 6CWA THR B -6 UNP O43175 EXPRESSION TAG SEQADV 6CWA GLU B -5 UNP O43175 EXPRESSION TAG SEQADV 6CWA ASN B -4 UNP O43175 EXPRESSION TAG SEQADV 6CWA LEU B -3 UNP O43175 EXPRESSION TAG SEQADV 6CWA TYR B -2 UNP O43175 EXPRESSION TAG SEQADV 6CWA PHE B -1 UNP O43175 EXPRESSION TAG SEQADV 6CWA GLN B 0 UNP O43175 EXPRESSION TAG SEQADV 6CWA SER B 1 UNP O43175 EXPRESSION TAG SEQADV 6CWA MET B 2 UNP O43175 EXPRESSION TAG SEQRES 1 A 327 SER GLY VAL ASP LEU GLY THR GLU ASN LEU TYR PHE GLN SEQRES 2 A 327 SER MET ALA ASN LEU ARG LYS VAL LEU ILE SER ASP SER SEQRES 3 A 327 LEU ASP PRO CYS CYS ARG LYS ILE LEU GLN ASP GLY GLY SEQRES 4 A 327 LEU GLN VAL VAL GLU LYS GLN ASN LEU SER LYS GLU GLU SEQRES 5 A 327 LEU ILE ALA GLU LEU GLN ASP CYS GLU GLY LEU ILE VAL SEQRES 6 A 327 ARG SER ALA THR LYS VAL THR ALA ASP VAL ILE ASN ALA SEQRES 7 A 327 ALA GLU LYS LEU GLN VAL VAL GLY ARG ALA GLY THR GLY SEQRES 8 A 327 VAL ASP ASN VAL ASP LEU GLU ALA ALA THR ARG LYS GLY SEQRES 9 A 327 ILE LEU VAL MET ASN THR PRO ASN GLY ASN SER LEU SER SEQRES 10 A 327 ALA ALA GLU LEU THR CYS GLY MET ILE MET CYS LEU ALA SEQRES 11 A 327 ARG GLN ILE PRO GLN ALA THR ALA SER MET LYS ASP GLY SEQRES 12 A 327 LYS TRP GLU ARG LYS LYS PHE MET GLY THR GLU LEU ASN SEQRES 13 A 327 GLY LYS THR LEU GLY ILE LEU GLY LEU GLY ARG ILE GLY SEQRES 14 A 327 ARG GLU VAL ALA THR ARG MET GLN SER PHE GLY MET LYS SEQRES 15 A 327 THR ILE GLY TYR ASP PRO ILE ILE SER PRO GLU VAL SER SEQRES 16 A 327 ALA SER PHE GLY VAL GLN GLN LEU PRO LEU GLU GLU ILE SEQRES 17 A 327 TRP PRO LEU CYS ASP PHE ILE THR VAL HIS THR PRO LEU SEQRES 18 A 327 LEU PRO SER THR THR GLY LEU LEU ASN ASP ASN THR PHE SEQRES 19 A 327 ALA GLN CYS LYS LYS GLY VAL ARG VAL VAL ASN CYS ALA SEQRES 20 A 327 ARG GLY GLY ILE VAL ASP GLU GLY ALA LEU LEU ARG ALA SEQRES 21 A 327 LEU GLN SER GLY GLN CYS ALA GLY ALA ALA LEU ASP VAL SEQRES 22 A 327 PHE THR GLU GLU PRO PRO ARG ASP ARG ALA LEU VAL ASP SEQRES 23 A 327 HIS GLU ASN VAL ILE SER CYS PRO HIS LEU GLY ALA SER SEQRES 24 A 327 THR LYS GLU ALA GLN SER ARG CYS GLY GLU GLU ILE ALA SEQRES 25 A 327 VAL GLN PHE VAL ASP MET VAL LYS GLY LYS SER LEU THR SEQRES 26 A 327 GLY VAL SEQRES 1 B 327 SER GLY VAL ASP LEU GLY THR GLU ASN LEU TYR PHE GLN SEQRES 2 B 327 SER MET ALA ASN LEU ARG LYS VAL LEU ILE SER ASP SER SEQRES 3 B 327 LEU ASP PRO CYS CYS ARG LYS ILE LEU GLN ASP GLY GLY SEQRES 4 B 327 LEU GLN VAL VAL GLU LYS GLN ASN LEU SER LYS GLU GLU SEQRES 5 B 327 LEU ILE ALA GLU LEU GLN ASP CYS GLU GLY LEU ILE VAL SEQRES 6 B 327 ARG SER ALA THR LYS VAL THR ALA ASP VAL ILE ASN ALA SEQRES 7 B 327 ALA GLU LYS LEU GLN VAL VAL GLY ARG ALA GLY THR GLY SEQRES 8 B 327 VAL ASP ASN VAL ASP LEU GLU ALA ALA THR ARG LYS GLY SEQRES 9 B 327 ILE LEU VAL MET ASN THR PRO ASN GLY ASN SER LEU SER SEQRES 10 B 327 ALA ALA GLU LEU THR CYS GLY MET ILE MET CYS LEU ALA SEQRES 11 B 327 ARG GLN ILE PRO GLN ALA THR ALA SER MET LYS ASP GLY SEQRES 12 B 327 LYS TRP GLU ARG LYS LYS PHE MET GLY THR GLU LEU ASN SEQRES 13 B 327 GLY LYS THR LEU GLY ILE LEU GLY LEU GLY ARG ILE GLY SEQRES 14 B 327 ARG GLU VAL ALA THR ARG MET GLN SER PHE GLY MET LYS SEQRES 15 B 327 THR ILE GLY TYR ASP PRO ILE ILE SER PRO GLU VAL SER SEQRES 16 B 327 ALA SER PHE GLY VAL GLN GLN LEU PRO LEU GLU GLU ILE SEQRES 17 B 327 TRP PRO LEU CYS ASP PHE ILE THR VAL HIS THR PRO LEU SEQRES 18 B 327 LEU PRO SER THR THR GLY LEU LEU ASN ASP ASN THR PHE SEQRES 19 B 327 ALA GLN CYS LYS LYS GLY VAL ARG VAL VAL ASN CYS ALA SEQRES 20 B 327 ARG GLY GLY ILE VAL ASP GLU GLY ALA LEU LEU ARG ALA SEQRES 21 B 327 LEU GLN SER GLY GLN CYS ALA GLY ALA ALA LEU ASP VAL SEQRES 22 B 327 PHE THR GLU GLU PRO PRO ARG ASP ARG ALA LEU VAL ASP SEQRES 23 B 327 HIS GLU ASN VAL ILE SER CYS PRO HIS LEU GLY ALA SER SEQRES 24 B 327 THR LYS GLU ALA GLN SER ARG CYS GLY GLU GLU ILE ALA SEQRES 25 B 327 VAL GLN PHE VAL ASP MET VAL LYS GLY LYS SER LEU THR SEQRES 26 B 327 GLY VAL HET 3PG A1001 11 HET NAI A1002 44 HET 3PG B1001 11 HET NAI B1002 44 HETNAM 3PG 3-PHOSPHOGLYCERIC ACID HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETSYN NAI NADH FORMUL 3 3PG 2(C3 H7 O7 P) FORMUL 4 NAI 2(C21 H29 N7 O14 P2) FORMUL 7 HOH *311(H2 O) HELIX 1 AA1 PRO A 16 GLY A 25 1 10 HELIX 2 AA2 SER A 36 ALA A 42 1 7 HELIX 3 AA3 GLU A 43 GLN A 45 5 3 HELIX 4 AA4 THR A 59 ALA A 66 1 8 HELIX 5 AA5 ASP A 83 ARG A 89 1 7 HELIX 6 AA6 ASN A 101 GLN A 119 1 19 HELIX 7 AA7 GLN A 119 ASP A 129 1 11 HELIX 8 AA8 ARG A 134 MET A 138 5 5 HELIX 9 AA9 GLY A 153 SER A 165 1 13 HELIX 10 AB1 SER A 178 PHE A 185 1 8 HELIX 11 AB2 PRO A 191 TRP A 196 1 6 HELIX 12 AB3 PRO A 197 CYS A 199 5 3 HELIX 13 AB4 ASN A 217 CYS A 224 1 8 HELIX 14 AB5 ASP A 240 GLY A 251 1 12 HELIX 15 AB6 ARG A 269 HIS A 274 1 6 HELIX 16 AB7 THR A 287 ASP A 304 1 18 HELIX 17 AB8 PRO B 16 GLN B 23 1 8 HELIX 18 AB9 THR B 59 ALA B 66 1 8 HELIX 19 AC1 ASP B 83 ARG B 89 1 7 HELIX 20 AC2 ASN B 101 GLN B 119 1 19 HELIX 21 AC3 GLN B 119 ASP B 129 1 11 HELIX 22 AC4 ARG B 134 MET B 138 5 5 HELIX 23 AC5 GLY B 153 SER B 165 1 13 HELIX 24 AC6 SER B 178 PHE B 185 1 8 HELIX 25 AC7 PRO B 191 TRP B 196 1 6 HELIX 26 AC8 PRO B 197 CYS B 199 5 3 HELIX 27 AC9 ASN B 217 ALA B 222 1 6 HELIX 28 AD1 ASP B 240 GLY B 251 1 12 HELIX 29 AD2 ARG B 269 HIS B 274 1 6 HELIX 30 AD3 THR B 287 PHE B 302 1 16 SHEET 1 AA1 5 GLN A 28 VAL A 30 0 SHEET 2 AA1 5 LYS A 7 ILE A 10 1 N ILE A 10 O VAL A 30 SHEET 3 AA1 5 GLY A 49 VAL A 52 1 O GLY A 49 N LEU A 9 SHEET 4 AA1 5 VAL A 71 ARG A 74 1 O GLY A 73 N LEU A 50 SHEET 5 AA1 5 LEU A 93 MET A 95 1 O MET A 95 N ARG A 74 SHEET 1 AA2 7 GLN A 188 GLN A 189 0 SHEET 2 AA2 7 LYS A 169 TYR A 173 1 N GLY A 172 O GLN A 188 SHEET 3 AA2 7 THR A 146 LEU A 150 1 N LEU A 147 O LYS A 169 SHEET 4 AA2 7 PHE A 201 VAL A 204 1 O PHE A 201 N GLY A 148 SHEET 5 AA2 7 ARG A 229 ASN A 232 1 O VAL A 231 N ILE A 202 SHEET 6 AA2 7 GLY A 255 LEU A 258 1 O ALA A 257 N ASN A 232 SHEET 7 AA2 7 VAL A 277 SER A 279 1 O ILE A 278 N ALA A 256 SHEET 1 AA3 4 VAL B 8 ILE B 10 0 SHEET 2 AA3 4 GLY B 49 VAL B 52 1 O GLY B 49 N LEU B 9 SHEET 3 AA3 4 VAL B 71 ARG B 74 1 O GLY B 73 N LEU B 50 SHEET 4 AA3 4 LEU B 93 MET B 95 1 O LEU B 93 N VAL B 72 SHEET 1 AA4 7 GLN B 188 GLN B 189 0 SHEET 2 AA4 7 LYS B 169 TYR B 173 1 N GLY B 172 O GLN B 188 SHEET 3 AA4 7 THR B 146 LEU B 150 1 N LEU B 147 O LYS B 169 SHEET 4 AA4 7 PHE B 201 VAL B 204 1 O PHE B 201 N GLY B 148 SHEET 5 AA4 7 ARG B 229 ASN B 232 1 O VAL B 231 N ILE B 202 SHEET 6 AA4 7 GLY B 255 LEU B 258 1 O ALA B 257 N ASN B 232 SHEET 7 AA4 7 VAL B 277 SER B 279 1 O ILE B 278 N LEU B 258 CISPEP 1 GLU A 264 PRO A 265 0 -3.93 CISPEP 2 GLU B 264 PRO B 265 0 -3.84 SITE 1 AC1 14 ARG A 53 SER A 54 ARG A 74 GLY A 76 SITE 2 AC1 14 THR A 77 ASN A 101 ARG A 235 HIS A 282 SITE 3 AC1 14 ALA A 285 NAI A1002 HOH A1107 HOH A1181 SITE 4 AC1 14 HOH A1208 ARG B 134 SITE 1 AC2 29 THR A 77 ASN A 101 ALA A 105 GLY A 151 SITE 2 AC2 29 GLY A 153 ARG A 154 ILE A 155 TYR A 173 SITE 3 AC2 29 ASP A 174 PRO A 175 ILE A 176 HIS A 205 SITE 4 AC2 29 THR A 206 PRO A 207 THR A 212 CYS A 233 SITE 5 AC2 29 ALA A 234 ARG A 235 ASP A 259 HIS A 282 SITE 6 AC2 29 GLY A 284 ALA A 285 3PG A1001 HOH A1117 SITE 7 AC2 29 HOH A1125 HOH A1142 HOH A1144 HOH A1175 SITE 8 AC2 29 HOH A1183 SITE 1 AC3 14 ARG A 134 ARG B 53 SER B 54 ARG B 74 SITE 2 AC3 14 THR B 77 GLY B 78 ASN B 101 ARG B 235 SITE 3 AC3 14 HIS B 282 ALA B 285 NAI B1002 HOH B1110 SITE 4 AC3 14 HOH B1120 HOH B1193 SITE 1 AC4 30 ASN B 101 ALA B 105 GLY B 151 GLY B 153 SITE 2 AC4 30 ARG B 154 ILE B 155 TYR B 173 ASP B 174 SITE 3 AC4 30 PRO B 175 ILE B 176 HIS B 205 THR B 206 SITE 4 AC4 30 PRO B 207 THR B 212 CYS B 233 ALA B 234 SITE 5 AC4 30 ARG B 235 ASP B 259 HIS B 282 GLY B 284 SITE 6 AC4 30 ALA B 285 3PG B1001 HOH B1104 HOH B1106 SITE 7 AC4 30 HOH B1157 HOH B1160 HOH B1174 HOH B1175 SITE 8 AC4 30 HOH B1206 HOH B1210 CRYST1 43.110 59.620 63.480 89.64 89.83 79.36 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023196 -0.004356 -0.000046 0.00000 SCALE2 0.000000 0.017066 -0.000099 0.00000 SCALE3 0.000000 0.000000 0.015753 0.00000