HEADER TRANSFERASE 01-APR-18 6CWZ TITLE CRYSTAL STRUCTURE OF APO SUMO E1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUMO-ACTIVATING ENZYME SUBUNIT 1; COMPND 3 CHAIN: C; COMPND 4 SYNONYM: UBIQUITIN-LIKE 1-ACTIVATING ENZYME E1A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SUMO-ACTIVATING ENZYME SUBUNIT 2; COMPND 8 CHAIN: D; COMPND 9 SYNONYM: ANTHRACYCLINE-ASSOCIATED RESISTANCE ARX,UBIQUITIN-LIKE 1- COMPND 10 ACTIVATING ENZYME E1B,UBIQUITIN-LIKE MODIFIER-ACTIVATING ENZYME 2; COMPND 11 EC: 2.3.2.-; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SAE1, AOS1, SUA1, UBLE1A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-15B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: UBA2, SAE2, UBLE1B, HRIHFB2115; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 CODON PLUS; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET-28B KEYWDS ROSSMANN-LIKE FOLD, UBIQUITIN-LIKE FOLD, UBIQUITIN ACTIVATING ENZYME, KEYWDS 2 ACTIVITY, ATP BINDING, LIGASE ACTIVITY, ATP/MG BINDING, UBIQUITIN KEYWDS 3 E2, LIGASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.LV,L.YUAN,J.H.ATKISON,K.M.WILLIAMS,S.K.OLSEN REVDAT 3 04-OCT-23 6CWZ 1 REMARK REVDAT 2 01-JAN-20 6CWZ 1 REMARK REVDAT 1 16-JAN-19 6CWZ 0 JRNL AUTH Z.LV,L.YUAN,J.H.ATKISON,K.M.WILLIAMS,R.VEGA,E.H.SESSIONS, JRNL AUTH 2 D.B.DIVLIANSKA,C.DAVIES,Y.CHEN,S.K.OLSEN JRNL TITL MOLECULAR MECHANISM OF A COVALENT ALLOSTERIC INHIBITOR OF JRNL TITL 2 SUMO E1 ACTIVATING ENZYME. JRNL REF NAT COMMUN V. 9 5145 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30514846 JRNL DOI 10.1038/S41467-018-07015-1 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 21054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.490 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9979 - 7.4478 0.98 1474 155 0.1771 0.2118 REMARK 3 2 7.4478 - 5.9150 1.00 1417 149 0.2327 0.2640 REMARK 3 3 5.9150 - 5.1683 1.00 1383 145 0.2424 0.2970 REMARK 3 4 5.1683 - 4.6962 1.00 1380 145 0.1940 0.2259 REMARK 3 5 4.6962 - 4.3599 1.00 1375 145 0.1841 0.2095 REMARK 3 6 4.3599 - 4.1030 1.00 1377 144 0.2003 0.2581 REMARK 3 7 4.1030 - 3.8976 1.00 1359 142 0.2241 0.2614 REMARK 3 8 3.8976 - 3.7280 1.00 1336 141 0.2478 0.2551 REMARK 3 9 3.7280 - 3.5845 1.00 1369 143 0.2485 0.2800 REMARK 3 10 3.5845 - 3.4609 1.00 1350 142 0.2554 0.2832 REMARK 3 11 3.4609 - 3.3527 1.00 1355 142 0.2870 0.3391 REMARK 3 12 3.3527 - 3.2569 0.99 1327 139 0.3199 0.3275 REMARK 3 13 3.2569 - 3.1711 0.99 1343 142 0.3605 0.3878 REMARK 3 14 3.1711 - 3.0938 0.91 1210 125 0.4121 0.3875 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 89.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 111.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6544 REMARK 3 ANGLE : 0.439 8839 REMARK 3 CHIRALITY : 0.039 1002 REMARK 3 PLANARITY : 0.004 1148 REMARK 3 DIHEDRAL : 13.262 3992 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 118.0933 1.0760 371.0511 REMARK 3 T TENSOR REMARK 3 T11: 0.6736 T22: 0.7138 REMARK 3 T33: 0.6345 T12: -0.0348 REMARK 3 T13: 0.0110 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.7419 L22: 2.1237 REMARK 3 L33: 2.7866 L12: -0.3802 REMARK 3 L13: -0.2763 L23: 1.5281 REMARK 3 S TENSOR REMARK 3 S11: 0.0840 S12: 0.1580 S13: 0.0663 REMARK 3 S21: -0.3840 S22: 0.0161 S23: -0.2218 REMARK 3 S31: -0.5348 S32: 0.0538 S33: -0.0693 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CWZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233632. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21123 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.98500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3KYC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M BIS-TRIS REMARK 280 HCL PH 6.5, 20% PEG3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.06950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.48650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.68900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 86.48650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.06950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.68900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 VAL C 2 REMARK 465 GLU C 3 REMARK 465 LYS C 4 REMARK 465 GLU C 5 REMARK 465 GLU C 6 REMARK 465 ALA C 7 REMARK 465 GLY C 8 REMARK 465 GLY C 9 REMARK 465 LYS C 180 REMARK 465 VAL C 181 REMARK 465 ALA C 182 REMARK 465 LYS C 183 REMARK 465 VAL C 184 REMARK 465 SER C 185 REMARK 465 GLN C 186 REMARK 465 GLY C 187 REMARK 465 VAL C 188 REMARK 465 GLU C 189 REMARK 465 ASP C 190 REMARK 465 GLY C 191 REMARK 465 PRO C 192 REMARK 465 ASP C 193 REMARK 465 THR C 194 REMARK 465 LYS C 195 REMARK 465 ARG C 196 REMARK 465 ALA C 197 REMARK 465 LYS C 198 REMARK 465 LEU C 199 REMARK 465 ASP C 200 REMARK 465 SER C 201 REMARK 465 SER C 202 REMARK 465 GLU C 203 REMARK 465 LYS C 346 REMARK 465 MET D -19 REMARK 465 GLY D -18 REMARK 465 SER D -17 REMARK 465 SER D -16 REMARK 465 HIS D -15 REMARK 465 HIS D -14 REMARK 465 HIS D -13 REMARK 465 HIS D -12 REMARK 465 HIS D -11 REMARK 465 HIS D -10 REMARK 465 SER D -9 REMARK 465 SER D -8 REMARK 465 GLY D -7 REMARK 465 LEU D -6 REMARK 465 VAL D -5 REMARK 465 PRO D -4 REMARK 465 ARG D -3 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 HIS D 0 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 LEU D 3 REMARK 465 TRP D 217 REMARK 465 GLU D 218 REMARK 465 PRO D 219 REMARK 465 THR D 220 REMARK 465 GLU D 221 REMARK 465 ALA D 222 REMARK 465 GLU D 223 REMARK 465 ALA D 224 REMARK 465 ARG D 225 REMARK 465 ALA D 226 REMARK 465 ARG D 227 REMARK 465 ALA D 228 REMARK 465 SER D 229 REMARK 465 ASN D 230 REMARK 465 GLU D 231 REMARK 465 ASP D 232 REMARK 465 GLY D 233 REMARK 465 ASP D 234 REMARK 465 ILE D 235 REMARK 465 LYS D 236 REMARK 465 ARG D 237 REMARK 465 ILE D 238 REMARK 465 GLY D 291 REMARK 465 GLU D 292 REMARK 465 GLU D 293 REMARK 465 THR D 294 REMARK 465 ASN D 295 REMARK 465 ALA D 296 REMARK 465 SER D 297 REMARK 465 ASP D 298 REMARK 465 GLN D 299 REMARK 465 GLN D 300 REMARK 465 ASN D 301 REMARK 465 GLU D 302 REMARK 465 PRO D 303 REMARK 465 GLN D 304 REMARK 465 LEU D 305 REMARK 465 GLY D 306 REMARK 465 LEU D 307 REMARK 465 ASP D 549 REMARK 465 ALA D 550 REMARK 465 PRO D 551 REMARK 465 GLU D 552 REMARK 465 LYS D 553 REMARK 465 VAL D 554 REMARK 465 GLY D 555 REMARK 465 PRO D 556 REMARK 465 LYS D 557 REMARK 465 GLN D 558 REMARK 465 ALA D 559 REMARK 465 GLU D 560 REMARK 465 ASP D 561 REMARK 465 ALA D 562 REMARK 465 ALA D 563 REMARK 465 LYS D 564 REMARK 465 SER D 565 REMARK 465 ILE D 566 REMARK 465 THR D 567 REMARK 465 ASN D 568 REMARK 465 GLY D 569 REMARK 465 SER D 570 REMARK 465 ASP D 571 REMARK 465 ASP D 572 REMARK 465 GLY D 573 REMARK 465 ALA D 574 REMARK 465 GLN D 575 REMARK 465 PRO D 576 REMARK 465 SER D 577 REMARK 465 THR D 578 REMARK 465 SER D 579 REMARK 465 THR D 580 REMARK 465 ALA D 581 REMARK 465 GLN D 582 REMARK 465 GLU D 583 REMARK 465 GLN D 584 REMARK 465 ASP D 585 REMARK 465 ASP D 586 REMARK 465 VAL D 587 REMARK 465 LEU D 588 REMARK 465 ILE D 589 REMARK 465 VAL D 590 REMARK 465 ASP D 591 REMARK 465 SER D 592 REMARK 465 ASP D 593 REMARK 465 GLU D 594 REMARK 465 GLU D 595 REMARK 465 ASP D 596 REMARK 465 SER D 597 REMARK 465 SER D 598 REMARK 465 ASN D 599 REMARK 465 ASN D 600 REMARK 465 ALA D 601 REMARK 465 ASP D 602 REMARK 465 VAL D 603 REMARK 465 SER D 604 REMARK 465 GLU D 605 REMARK 465 GLU D 606 REMARK 465 GLU D 607 REMARK 465 ARG D 608 REMARK 465 SER D 609 REMARK 465 ARG D 610 REMARK 465 LYS D 611 REMARK 465 ARG D 612 REMARK 465 LYS D 613 REMARK 465 LEU D 614 REMARK 465 ASP D 615 REMARK 465 GLU D 616 REMARK 465 LYS D 617 REMARK 465 GLU D 618 REMARK 465 ASN D 619 REMARK 465 LEU D 620 REMARK 465 SER D 621 REMARK 465 ALA D 622 REMARK 465 LYS D 623 REMARK 465 ARG D 624 REMARK 465 SER D 625 REMARK 465 ARG D 626 REMARK 465 ILE D 627 REMARK 465 GLU D 628 REMARK 465 GLN D 629 REMARK 465 LYS D 630 REMARK 465 GLU D 631 REMARK 465 GLU D 632 REMARK 465 LEU D 633 REMARK 465 ASP D 634 REMARK 465 ASP D 635 REMARK 465 VAL D 636 REMARK 465 ILE D 637 REMARK 465 ALA D 638 REMARK 465 LEU D 639 REMARK 465 ASP D 640 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU C 44 95.06 -64.82 REMARK 500 LYS C 45 -127.43 -149.23 REMARK 500 PRO C 73 40.44 -78.01 REMARK 500 ASN C 103 109.06 -161.76 REMARK 500 LYS C 117 30.85 -86.18 REMARK 500 PHE C 174 -167.03 -117.99 REMARK 500 MET C 206 110.49 -166.46 REMARK 500 TRP C 224 33.69 -86.87 REMARK 500 GLU C 264 17.33 -143.78 REMARK 500 CYS C 295 48.18 -151.51 REMARK 500 ARG C 321 -91.13 -115.28 REMARK 500 LYS D 86 47.60 -87.24 REMARK 500 ALA D 115 33.24 -144.32 REMARK 500 ALA D 142 98.68 -160.46 REMARK 500 ALA D 211 32.34 -89.80 REMARK 500 ALA D 215 -155.49 -109.36 REMARK 500 LYS D 260 -51.35 -128.86 REMARK 500 PHE D 366 36.72 -86.33 REMARK 500 SER D 367 9.36 58.28 REMARK 500 LYS D 409 48.34 -84.85 REMARK 500 VAL D 443 -58.21 -122.62 REMARK 500 ILE D 468 -60.76 -103.94 REMARK 500 VAL D 476 -73.43 -83.29 REMARK 500 ASP D 484 19.30 -152.72 REMARK 500 ASP D 537 78.71 -111.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 158 SG REMARK 620 2 CYS D 161 SG 105.6 REMARK 620 3 CYS D 441 SG 117.7 122.8 REMARK 620 4 CYS D 444 SG 101.2 89.9 114.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6CWY RELATED DB: PDB REMARK 900 6CWY IS THE SAME PROTEIN BUT WITH AN INHIBITOR COVALENTLY BOUND TO REMARK 900 CYS30 OF THE UBA2 SUBUNIT DBREF 6CWZ C 1 346 UNP Q9UBE0 SAE1_HUMAN 1 346 DBREF 6CWZ D 1 640 UNP Q9UBT2 SAE2_HUMAN 1 640 SEQADV 6CWZ MET D -19 UNP Q9UBT2 INITIATING METHIONINE SEQADV 6CWZ GLY D -18 UNP Q9UBT2 EXPRESSION TAG SEQADV 6CWZ SER D -17 UNP Q9UBT2 EXPRESSION TAG SEQADV 6CWZ SER D -16 UNP Q9UBT2 EXPRESSION TAG SEQADV 6CWZ HIS D -15 UNP Q9UBT2 EXPRESSION TAG SEQADV 6CWZ HIS D -14 UNP Q9UBT2 EXPRESSION TAG SEQADV 6CWZ HIS D -13 UNP Q9UBT2 EXPRESSION TAG SEQADV 6CWZ HIS D -12 UNP Q9UBT2 EXPRESSION TAG SEQADV 6CWZ HIS D -11 UNP Q9UBT2 EXPRESSION TAG SEQADV 6CWZ HIS D -10 UNP Q9UBT2 EXPRESSION TAG SEQADV 6CWZ SER D -9 UNP Q9UBT2 EXPRESSION TAG SEQADV 6CWZ SER D -8 UNP Q9UBT2 EXPRESSION TAG SEQADV 6CWZ GLY D -7 UNP Q9UBT2 EXPRESSION TAG SEQADV 6CWZ LEU D -6 UNP Q9UBT2 EXPRESSION TAG SEQADV 6CWZ VAL D -5 UNP Q9UBT2 EXPRESSION TAG SEQADV 6CWZ PRO D -4 UNP Q9UBT2 EXPRESSION TAG SEQADV 6CWZ ARG D -3 UNP Q9UBT2 EXPRESSION TAG SEQADV 6CWZ GLY D -2 UNP Q9UBT2 EXPRESSION TAG SEQADV 6CWZ SER D -1 UNP Q9UBT2 EXPRESSION TAG SEQADV 6CWZ HIS D 0 UNP Q9UBT2 EXPRESSION TAG SEQRES 1 C 346 MET VAL GLU LYS GLU GLU ALA GLY GLY GLY ILE SER GLU SEQRES 2 C 346 GLU GLU ALA ALA GLN TYR ASP ARG GLN ILE ARG LEU TRP SEQRES 3 C 346 GLY LEU GLU ALA GLN LYS ARG LEU ARG ALA SER ARG VAL SEQRES 4 C 346 LEU LEU VAL GLY LEU LYS GLY LEU GLY ALA GLU ILE ALA SEQRES 5 C 346 LYS ASN LEU ILE LEU ALA GLY VAL LYS GLY LEU THR MET SEQRES 6 C 346 LEU ASP HIS GLU GLN VAL THR PRO GLU ASP PRO GLY ALA SEQRES 7 C 346 GLN PHE LEU ILE ARG THR GLY SER VAL GLY ARG ASN ARG SEQRES 8 C 346 ALA GLU ALA SER LEU GLU ARG ALA GLN ASN LEU ASN PRO SEQRES 9 C 346 MET VAL ASP VAL LYS VAL ASP THR GLU ASP ILE GLU LYS SEQRES 10 C 346 LYS PRO GLU SER PHE PHE THR GLN PHE ASP ALA VAL CYS SEQRES 11 C 346 LEU THR CYS CYS SER ARG ASP VAL ILE VAL LYS VAL ASP SEQRES 12 C 346 GLN ILE CYS HIS LYS ASN SER ILE LYS PHE PHE THR GLY SEQRES 13 C 346 ASP VAL PHE GLY TYR HIS GLY TYR THR PHE ALA ASN LEU SEQRES 14 C 346 GLY GLU HIS GLU PHE VAL GLU GLU LYS THR LYS VAL ALA SEQRES 15 C 346 LYS VAL SER GLN GLY VAL GLU ASP GLY PRO ASP THR LYS SEQRES 16 C 346 ARG ALA LYS LEU ASP SER SER GLU THR THR MET VAL LYS SEQRES 17 C 346 LYS LYS VAL VAL PHE CYS PRO VAL LYS GLU ALA LEU GLU SEQRES 18 C 346 VAL ASP TRP SER SER GLU LYS ALA LYS ALA ALA LEU LYS SEQRES 19 C 346 ARG THR THR SER ASP TYR PHE LEU LEU GLN VAL LEU LEU SEQRES 20 C 346 LYS PHE ARG THR ASP LYS GLY ARG ASP PRO SER SER ASP SEQRES 21 C 346 THR TYR GLU GLU ASP SER GLU LEU LEU LEU GLN ILE ARG SEQRES 22 C 346 ASN ASP VAL LEU ASP SER LEU GLY ILE SER PRO ASP LEU SEQRES 23 C 346 LEU PRO GLU ASP PHE VAL ARG TYR CYS PHE SER GLU MET SEQRES 24 C 346 ALA PRO VAL CYS ALA VAL VAL GLY GLY ILE LEU ALA GLN SEQRES 25 C 346 GLU ILE VAL LYS ALA LEU SER GLN ARG ASP PRO PRO HIS SEQRES 26 C 346 ASN ASN PHE PHE PHE PHE ASP GLY MET LYS GLY ASN GLY SEQRES 27 C 346 ILE VAL GLU CYS LEU GLY PRO LYS SEQRES 1 D 660 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 D 660 LEU VAL PRO ARG GLY SER HIS MET ALA LEU SER ARG GLY SEQRES 3 D 660 LEU PRO ARG GLU LEU ALA GLU ALA VAL ALA GLY GLY ARG SEQRES 4 D 660 VAL LEU VAL VAL GLY ALA GLY GLY ILE GLY CYS GLU LEU SEQRES 5 D 660 LEU LYS ASN LEU VAL LEU THR GLY PHE SER HIS ILE ASP SEQRES 6 D 660 LEU ILE ASP LEU ASP THR ILE ASP VAL SER ASN LEU ASN SEQRES 7 D 660 ARG GLN PHE LEU PHE GLN LYS LYS HIS VAL GLY ARG SER SEQRES 8 D 660 LYS ALA GLN VAL ALA LYS GLU SER VAL LEU GLN PHE TYR SEQRES 9 D 660 PRO LYS ALA ASN ILE VAL ALA TYR HIS ASP SER ILE MET SEQRES 10 D 660 ASN PRO ASP TYR ASN VAL GLU PHE PHE ARG GLN PHE ILE SEQRES 11 D 660 LEU VAL MET ASN ALA LEU ASP ASN ARG ALA ALA ARG ASN SEQRES 12 D 660 HIS VAL ASN ARG MET CYS LEU ALA ALA ASP VAL PRO LEU SEQRES 13 D 660 ILE GLU SER GLY THR ALA GLY TYR LEU GLY GLN VAL THR SEQRES 14 D 660 THR ILE LYS LYS GLY VAL THR GLU CYS TYR GLU CYS HIS SEQRES 15 D 660 PRO LYS PRO THR GLN ARG THR PHE PRO GLY CYS THR ILE SEQRES 16 D 660 ARG ASN THR PRO SER GLU PRO ILE HIS CYS ILE VAL TRP SEQRES 17 D 660 ALA LYS TYR LEU PHE ASN GLN LEU PHE GLY GLU GLU ASP SEQRES 18 D 660 ALA ASP GLN GLU VAL SER PRO ASP ARG ALA ASP PRO GLU SEQRES 19 D 660 ALA ALA TRP GLU PRO THR GLU ALA GLU ALA ARG ALA ARG SEQRES 20 D 660 ALA SER ASN GLU ASP GLY ASP ILE LYS ARG ILE SER THR SEQRES 21 D 660 LYS GLU TRP ALA LYS SER THR GLY TYR ASP PRO VAL LYS SEQRES 22 D 660 LEU PHE THR LYS LEU PHE LYS ASP ASP ILE ARG TYR LEU SEQRES 23 D 660 LEU THR MET ASP LYS LEU TRP ARG LYS ARG LYS PRO PRO SEQRES 24 D 660 VAL PRO LEU ASP TRP ALA GLU VAL GLN SER GLN GLY GLU SEQRES 25 D 660 GLU THR ASN ALA SER ASP GLN GLN ASN GLU PRO GLN LEU SEQRES 26 D 660 GLY LEU LYS ASP GLN GLN VAL LEU ASP VAL LYS SER TYR SEQRES 27 D 660 ALA ARG LEU PHE SER LYS SER ILE GLU THR LEU ARG VAL SEQRES 28 D 660 HIS LEU ALA GLU LYS GLY ASP GLY ALA GLU LEU ILE TRP SEQRES 29 D 660 ASP LYS ASP ASP PRO SER ALA MET ASP PHE VAL THR SER SEQRES 30 D 660 ALA ALA ASN LEU ARG MET HIS ILE PHE SER MET ASN MET SEQRES 31 D 660 LYS SER ARG PHE ASP ILE LYS SER MET ALA GLY ASN ILE SEQRES 32 D 660 ILE PRO ALA ILE ALA THR THR ASN ALA VAL ILE ALA GLY SEQRES 33 D 660 LEU ILE VAL LEU GLU GLY LEU LYS ILE LEU SER GLY LYS SEQRES 34 D 660 ILE ASP GLN CYS ARG THR ILE PHE LEU ASN LYS GLN PRO SEQRES 35 D 660 ASN PRO ARG LYS LYS LEU LEU VAL PRO CYS ALA LEU ASP SEQRES 36 D 660 PRO PRO ASN PRO ASN CYS TYR VAL CYS ALA SER LYS PRO SEQRES 37 D 660 GLU VAL THR VAL ARG LEU ASN VAL HIS LYS VAL THR VAL SEQRES 38 D 660 LEU THR LEU GLN ASP LYS ILE VAL LYS GLU LYS PHE ALA SEQRES 39 D 660 MET VAL ALA PRO ASP VAL GLN ILE GLU ASP GLY LYS GLY SEQRES 40 D 660 THR ILE LEU ILE SER SER GLU GLU GLY GLU THR GLU ALA SEQRES 41 D 660 ASN ASN HIS LYS LYS LEU SER GLU PHE GLY ILE ARG ASN SEQRES 42 D 660 GLY SER ARG LEU GLN ALA ASP ASP PHE LEU GLN ASP TYR SEQRES 43 D 660 THR LEU LEU ILE ASN ILE LEU HIS SER GLU ASP LEU GLY SEQRES 44 D 660 LYS ASP VAL GLU PHE GLU VAL VAL GLY ASP ALA PRO GLU SEQRES 45 D 660 LYS VAL GLY PRO LYS GLN ALA GLU ASP ALA ALA LYS SER SEQRES 46 D 660 ILE THR ASN GLY SER ASP ASP GLY ALA GLN PRO SER THR SEQRES 47 D 660 SER THR ALA GLN GLU GLN ASP ASP VAL LEU ILE VAL ASP SEQRES 48 D 660 SER ASP GLU GLU ASP SER SER ASN ASN ALA ASP VAL SER SEQRES 49 D 660 GLU GLU GLU ARG SER ARG LYS ARG LYS LEU ASP GLU LYS SEQRES 50 D 660 GLU ASN LEU SER ALA LYS ARG SER ARG ILE GLU GLN LYS SEQRES 51 D 660 GLU GLU LEU ASP ASP VAL ILE ALA LEU ASP HET ZN D 701 1 HETNAM ZN ZINC ION FORMUL 3 ZN ZN 2+ HELIX 1 AA1 SER C 12 TYR C 19 1 8 HELIX 2 AA2 TYR C 19 GLY C 27 1 9 HELIX 3 AA3 LEU C 28 ALA C 36 1 9 HELIX 4 AA4 LYS C 45 LEU C 57 1 13 HELIX 5 AA5 ASN C 90 SER C 95 1 6 HELIX 6 AA6 SER C 95 LEU C 102 1 8 HELIX 7 AA7 PRO C 119 PHE C 126 5 8 HELIX 8 AA8 SER C 135 ASN C 149 1 15 HELIX 9 AA9 PRO C 215 GLU C 221 1 7 HELIX 10 AB1 SER C 226 LYS C 234 1 9 HELIX 11 AB2 SER C 238 LYS C 253 1 16 HELIX 12 AB3 THR C 261 ASP C 278 1 18 HELIX 13 AB4 SER C 283 LEU C 287 5 5 HELIX 14 AB5 PRO C 288 TYR C 294 5 7 HELIX 15 AB6 MET C 299 SER C 319 1 21 HELIX 16 AB7 PRO D 8 GLY D 18 1 11 HELIX 17 AB8 GLY D 26 GLY D 40 1 15 HELIX 18 AB9 GLN D 64 VAL D 68 5 5 HELIX 19 AC1 SER D 71 TYR D 84 1 14 HELIX 20 AC2 ASN D 102 ARG D 107 1 6 HELIX 21 AC3 ASN D 118 ASP D 133 1 16 HELIX 22 AC4 PRO D 171 ARG D 176 1 6 HELIX 23 AC5 GLU D 181 GLY D 198 1 18 HELIX 24 AC6 THR D 240 GLY D 248 1 9 HELIX 25 AC7 ASP D 250 LYS D 260 1 11 HELIX 26 AC8 LYS D 260 MET D 269 1 10 HELIX 27 AC9 LYS D 271 LYS D 275 5 5 HELIX 28 AD1 ASP D 283 GLN D 288 1 6 HELIX 29 AD2 ASP D 314 GLU D 335 1 22 HELIX 30 AD3 ASP D 348 PHE D 366 1 19 HELIX 31 AD4 SER D 372 GLY D 381 1 10 HELIX 32 AD5 ILE D 387 SER D 407 1 21 HELIX 33 AD6 LYS D 409 GLN D 412 5 4 HELIX 34 AD7 THR D 460 ASP D 466 1 7 HELIX 35 AD8 THR D 498 HIS D 503 1 6 HELIX 36 AD9 LYS D 505 GLY D 510 5 6 SHEET 1 AA116 ASP C 107 ASP C 111 0 SHEET 2 AA116 GLY C 62 LEU C 66 1 N MET C 65 O LYS C 109 SHEET 3 AA116 ARG C 38 VAL C 42 1 N LEU C 41 O THR C 64 SHEET 4 AA116 ALA C 128 THR C 132 1 O CYS C 130 N LEU C 40 SHEET 5 AA116 LYS C 152 PHE C 159 1 O LYS C 152 N VAL C 129 SHEET 6 AA116 HIS C 162 ASN C 168 -1 O HIS C 162 N PHE C 159 SHEET 7 AA116 PHE C 328 ASP C 332 -1 O PHE C 331 N GLY C 163 SHEET 8 AA116 ASN C 337 GLU C 341 -1 O ILE C 339 N PHE C 330 SHEET 9 AA116 LYS D 427 ALA D 433 -1 O LEU D 428 N GLY C 338 SHEET 10 AA116 ARG D 414 LEU D 418 -1 N THR D 415 O CYS D 432 SHEET 11 AA116 LEU D 145 ILE D 151 -1 N GLY D 146 O LEU D 418 SHEET 12 AA116 LEU D 136 ALA D 142 -1 N LEU D 136 O ILE D 151 SHEET 13 AA116 LEU D 111 ASN D 114 1 N VAL D 112 O ILE D 137 SHEET 14 AA116 ARG D 19 VAL D 23 1 N LEU D 21 O MET D 113 SHEET 15 AA116 HIS D 43 ILE D 47 1 O ASP D 45 N VAL D 22 SHEET 16 AA116 ASN D 88 TYR D 92 1 O VAL D 90 N LEU D 46 SHEET 1 AA2 2 GLU C 171 GLU C 176 0 SHEET 2 AA2 2 VAL C 207 VAL C 212 -1 O VAL C 207 N GLU C 176 SHEET 1 AA3 6 THR D 488 ILE D 491 0 SHEET 2 AA3 6 ASP D 479 ILE D 482 -1 N VAL D 480 O LEU D 490 SHEET 3 AA3 6 ARG D 516 ASP D 521 -1 O ASP D 520 N ASP D 479 SHEET 4 AA3 6 TYR D 526 HIS D 534 -1 O LEU D 528 N ALA D 519 SHEET 5 AA3 6 GLU D 449 LEU D 454 1 N VAL D 452 O ASN D 531 SHEET 6 AA3 6 PHE D 544 VAL D 546 -1 O GLU D 545 N ARG D 453 LINK SG CYS D 158 ZN ZN D 701 1555 1555 2.26 LINK SG CYS D 161 ZN ZN D 701 1555 1555 2.23 LINK SG CYS D 441 ZN ZN D 701 1555 1555 2.33 LINK SG CYS D 444 ZN ZN D 701 1555 1555 2.30 CISPEP 1 ASN C 326 ASN C 327 0 -4.68 CISPEP 2 PRO D 279 VAL D 280 0 8.00 SITE 1 AC1 4 CYS D 158 CYS D 161 CYS D 441 CYS D 444 CRYST1 56.139 115.378 172.973 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017813 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008667 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005781 0.00000