HEADER OXIDOREDUCTASE 03-APR-18 6CXH TITLE CRYSTAL STRUCTURE OF PARTICULATE METHANE MONOOXYGENASE FROM TITLE 2 METHYLOMICROBIUM ALCALIPHILUM 20Z COMPND MOL_ID: 1; COMPND 2 MOLECULE: PARTICULATE METHANE MONOOXYGENASE, B SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.13.25; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PARTICULATE METHANE MONOOXYGENASE, A SUBUNIT; COMPND 7 CHAIN: B; COMPND 8 EC: 1.14.13.25; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PARTICULATE METHANE MONOOXYGENASE, C SUBUNIT; COMPND 11 CHAIN: C; COMPND 12 EC: 1.14.13.25 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOMICROBIUM ALCALIPHILUM 20Z; SOURCE 3 ORGANISM_TAXID: 1091494; SOURCE 4 STRAIN: DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: METHYLOMICROBIUM ALCALIPHILUM 20Z; SOURCE 7 ORGANISM_TAXID: 1091494; SOURCE 8 STRAIN: DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: METHYLOMICROBIUM ALCALIPHILUM 20Z; SOURCE 11 ORGANISM_TAXID: 1091494; SOURCE 12 STRAIN: DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z KEYWDS COPPER DEPENDENT METHANE MONOOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.Y.RO,A.C.ROSENZWEIG REVDAT 5 04-OCT-23 6CXH 1 REMARK REVDAT 4 18-DEC-19 6CXH 1 REMARK REVDAT 3 18-JUL-18 6CXH 1 JRNL REVDAT 2 23-MAY-18 6CXH 1 JRNL REVDAT 1 16-MAY-18 6CXH 0 JRNL AUTH S.Y.RO,M.O.ROSS,Y.W.DENG,S.BATELU,T.J.LAWTON,J.D.HURLEY, JRNL AUTH 2 T.L.STEMMLER,B.M.HOFFMAN,A.C.ROSENZWEIG JRNL TITL FROM MICELLES TO BICELLES: EFFECT OF THE MEMBRANE ON JRNL TITL 2 PARTICULATE METHANE MONOOXYGENASE ACTIVITY. JRNL REF J. BIOL. CHEM. V. 293 10457 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29739854 JRNL DOI 10.1074/JBC.RA118.003348 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 35187 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2339 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.5832 - 6.3498 0.99 3450 197 0.2250 0.2615 REMARK 3 2 6.3498 - 5.0433 1.00 3433 188 0.2154 0.2579 REMARK 3 3 5.0433 - 4.4068 1.00 3443 185 0.1758 0.2256 REMARK 3 4 4.4068 - 4.0043 1.00 3405 195 0.1814 0.2600 REMARK 3 5 4.0043 - 3.7175 1.00 3431 168 0.1937 0.2499 REMARK 3 6 3.7175 - 3.4985 1.00 3405 188 0.2125 0.2580 REMARK 3 7 3.4985 - 3.3234 1.00 3391 203 0.2318 0.2672 REMARK 3 8 3.3234 - 3.1788 1.00 3441 173 0.2485 0.2987 REMARK 3 9 3.1788 - 3.0564 0.85 2868 152 0.2652 0.3830 REMARK 3 10 3.0564 - 2.9510 0.46 1592 77 0.2541 0.3692 REMARK 3 11 2.9510 - 2.8588 0.26 908 36 0.2606 0.3048 REMARK 3 12 2.8588 - 2.7771 0.14 481 16 0.3032 0.2908 REMARK 3 13 2.7771 - 2.7040 0.04 158 3 0.2833 0.4230 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5984 REMARK 3 ANGLE : 1.313 8156 REMARK 3 CHIRALITY : 0.065 908 REMARK 3 PLANARITY : 0.008 1002 REMARK 3 DIHEDRAL : 11.437 3387 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A):-168.5951-171.7598 8.9381 REMARK 3 T TENSOR REMARK 3 T11: 0.0701 T22: 0.0705 REMARK 3 T33: 0.0385 T12: -0.2034 REMARK 3 T13: -0.0151 T23: 0.0439 REMARK 3 L TENSOR REMARK 3 L11: 0.0290 L22: 0.0392 REMARK 3 L33: 0.0090 L12: 0.0458 REMARK 3 L13: 0.0067 L23: 0.0044 REMARK 3 S TENSOR REMARK 3 S11: 0.0408 S12: 0.0329 S13: 0.0044 REMARK 3 S21: 0.0166 S22: -0.0643 S23: 0.0298 REMARK 3 S31: -0.0040 S32: -0.0521 S33: -0.0195 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CXH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233597. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033288, 1.377602 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 2.3.10 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 2.3.10 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46989 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 11.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3RGB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.8 M AMSO4, 0.2 M MES, PH 6, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 73.07600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 73.07600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 73.07600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: NONAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: NONAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 51620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 78870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -427.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -359.60000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -124.56909 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -71.92000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -373.70728 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ILE A 3 REMARK 465 ILE A 4 REMARK 465 LYS A 5 REMARK 465 ASP A 6 REMARK 465 LYS A 7 REMARK 465 VAL A 8 REMARK 465 ALA A 9 REMARK 465 LYS A 10 REMARK 465 LEU A 11 REMARK 465 SER A 12 REMARK 465 PHE A 13 REMARK 465 VAL A 14 REMARK 465 ALA A 15 REMARK 465 LEU A 16 REMARK 465 LEU A 17 REMARK 465 VAL A 18 REMARK 465 THR A 19 REMARK 465 VAL A 20 REMARK 465 THR A 21 REMARK 465 ALA A 22 REMARK 465 ALA A 23 REMARK 465 MET A 24 REMARK 465 PHE A 25 REMARK 465 TYR A 26 REMARK 465 THR A 27 REMARK 465 PRO A 28 REMARK 465 THR A 29 REMARK 465 ALA A 30 REMARK 465 SER A 31 REMARK 465 ALA A 32 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ALA B 3 REMARK 465 GLN B 245 REMARK 465 ALA B 246 REMARK 465 ALA B 247 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 ALA C 3 REMARK 465 THR C 4 REMARK 465 THR C 5 REMARK 465 GLU C 6 REMARK 465 SER C 7 REMARK 465 VAL C 8 REMARK 465 LYS C 9 REMARK 465 ALA C 10 REMARK 465 ASP C 11 REMARK 465 ALA C 12 REMARK 465 ALA C 13 REMARK 465 GLU C 14 REMARK 465 ALA C 15 REMARK 465 PRO C 16 REMARK 465 LEU C 17 REMARK 465 LEU C 18 REMARK 465 ASN C 19 REMARK 465 LYS C 20 REMARK 465 LYS C 21 REMARK 465 ASN C 22 REMARK 465 ILE C 23 REMARK 465 ILE C 24 REMARK 465 ALA C 25 REMARK 465 GLY C 26 REMARK 465 ALA C 27 REMARK 465 SER C 28 REMARK 465 LEU C 29 REMARK 465 TYR C 30 REMARK 465 LEU C 31 REMARK 465 VAL C 32 REMARK 465 PHE C 33 REMARK 465 TYR C 34 REMARK 465 ALA C 35 REMARK 465 TRP C 36 REMARK 465 VAL C 37 REMARK 465 ARG C 38 REMARK 465 TRP C 39 REMARK 465 TYR C 40 REMARK 465 GLU C 41 REMARK 465 GLY C 42 REMARK 465 VAL C 43 REMARK 465 TYR C 44 REMARK 465 GLY C 45 REMARK 465 TRP C 46 REMARK 465 SER C 47 REMARK 465 ALA C 48 REMARK 465 GLY C 49 REMARK 465 LEU C 50 REMARK 465 ASP C 51 REMARK 465 SER C 52 REMARK 465 PHE C 53 REMARK 465 ALA C 54 REMARK 465 PRO C 55 REMARK 465 GLU C 56 REMARK 465 PHE C 57 REMARK 465 GLU C 58 REMARK 465 THR C 59 REMARK 465 TYR C 60 REMARK 465 TRP C 61 REMARK 465 MET C 62 REMARK 465 ASN C 63 REMARK 465 PHE C 64 REMARK 465 LEU C 65 REMARK 465 TYR C 66 REMARK 465 ILE C 67 REMARK 465 GLU C 68 REMARK 465 MET C 69 REMARK 465 VAL C 70 REMARK 465 LEU C 71 REMARK 465 GLU C 72 REMARK 465 VAL C 73 REMARK 465 LEU C 74 REMARK 465 THR C 75 REMARK 465 ALA C 76 REMARK 465 SER C 77 REMARK 465 VAL C 78 REMARK 465 LEU C 79 REMARK 465 TRP C 80 REMARK 465 GLY C 81 REMARK 465 TYR C 82 REMARK 465 ILE C 83 REMARK 465 TRP C 84 REMARK 465 LYS C 85 REMARK 465 SER C 86 REMARK 465 ARG C 87 REMARK 465 ASP C 88 REMARK 465 ARG C 89 REMARK 465 TYR C 123 REMARK 465 PHE C 124 REMARK 465 THR C 125 REMARK 465 GLU C 126 REMARK 465 GLN C 127 REMARK 465 ASP C 128 REMARK 465 GLY C 129 REMARK 465 THR C 130 REMARK 465 TRP C 131 REMARK 465 HIS C 132 REMARK 465 GLN C 133 REMARK 465 THR C 134 REMARK 465 ILE C 135 REMARK 465 VAL C 136 REMARK 465 ARG C 137 REMARK 465 ASP C 138 REMARK 465 THR C 139 REMARK 465 ASP C 140 REMARK 465 PHE C 141 REMARK 465 THR C 142 REMARK 465 PRO C 143 REMARK 465 SER C 144 REMARK 465 HIS C 145 REMARK 465 ILE C 146 REMARK 465 ILE C 147 REMARK 465 GLU C 148 REMARK 465 PHE C 149 REMARK 465 TYR C 150 REMARK 465 LEU C 151 REMARK 465 SER C 152 REMARK 465 TYR C 153 REMARK 465 PRO C 154 REMARK 465 ILE C 155 REMARK 465 TYR C 156 REMARK 465 LEU C 193 REMARK 465 PRO C 194 REMARK 465 ASN C 195 REMARK 465 VAL C 196 REMARK 465 GLY C 197 REMARK 465 LEU C 198 REMARK 465 ASN C 199 REMARK 465 GLU C 200 REMARK 465 TRP C 201 REMARK 465 GLY C 202 REMARK 465 HIS C 203 REMARK 465 THR C 204 REMARK 465 PHE C 205 REMARK 465 TRP C 206 REMARK 465 PHE C 207 REMARK 465 MET C 208 REMARK 465 GLU C 209 REMARK 465 GLU C 210 REMARK 465 LEU C 211 REMARK 465 PHE C 212 REMARK 465 VAL C 213 REMARK 465 ALA C 214 REMARK 465 PRO C 215 REMARK 465 LEU C 216 REMARK 465 HIS C 217 REMARK 465 TYR C 218 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 100 O TYR B 186 2.08 REMARK 500 OG SER C 163 OH TYR C 182 2.11 REMARK 500 NH1 ARG A 323 OD1 ASP A 332 2.16 REMARK 500 O ALA A 101 OH TYR B 173 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 97 CA - CB - CG ANGL. DEV. = -23.7 DEGREES REMARK 500 ASP C 248 C - N - CA ANGL. DEV. = 16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 46 -97.68 -116.67 REMARK 500 ASP A 57 12.92 -149.47 REMARK 500 ASN A 62 -15.69 104.58 REMARK 500 TRP A 77 130.34 -36.92 REMARK 500 THR A 80 27.27 -69.93 REMARK 500 VAL A 110 63.60 -118.59 REMARK 500 ARG A 131 -40.56 -138.52 REMARK 500 GLU A 176 117.53 52.97 REMARK 500 THR A 182 -9.17 -141.29 REMARK 500 ALA A 201 -71.40 -52.17 REMARK 500 PHE A 212 -77.94 -99.87 REMARK 500 LYS A 223 59.65 -107.89 REMARK 500 ALA A 240 -73.42 -48.28 REMARK 500 LEU A 277 141.52 73.53 REMARK 500 SER A 321 -2.04 73.99 REMARK 500 VAL A 329 -35.89 -134.42 REMARK 500 GLU A 344 52.04 -118.73 REMARK 500 ASN A 351 58.49 -96.31 REMARK 500 GLU A 358 118.73 62.79 REMARK 500 ASP A 368 166.10 179.36 REMARK 500 PRO A 408 173.64 -56.98 REMARK 500 SER B 10 137.10 177.28 REMARK 500 SER B 18 -3.98 -55.29 REMARK 500 ASP B 56 -157.60 -100.98 REMARK 500 THR B 70 -85.53 -50.66 REMARK 500 TYR B 83 15.04 -144.97 REMARK 500 ARG B 84 45.00 29.68 REMARK 500 TRP B 87 43.58 -96.97 REMARK 500 SER B 138 -40.43 72.13 REMARK 500 ASN B 139 65.71 38.62 REMARK 500 ASN B 174 45.72 11.36 REMARK 500 SER C 93 86.29 -156.70 REMARK 500 ALA C 121 61.85 -104.26 REMARK 500 PRO C 172 -36.56 -31.93 REMARK 500 TYR C 174 61.88 -101.77 REMARK 500 LEU C 178 123.66 57.29 REMARK 500 VAL C 187 -93.47 -59.15 REMARK 500 PHE C 190 35.07 -74.78 REMARK 500 ASP C 248 -45.41 86.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 234 VAL A 235 136.22 REMARK 500 GLU A 276 LEU A 277 148.78 REMARK 500 LYS C 246 LYS C 247 -149.79 REMARK 500 LYS C 247 ASP C 248 37.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 501 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 33 N REMARK 620 2 HIS A 33 ND1 90.9 REMARK 620 3 HIS A 137 ND1 149.1 76.1 REMARK 620 4 HIS A 139 NE2 97.9 156.4 105.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CM5 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CM5 C 301 DBREF 6CXH A 1 414 UNP G4SZ64 G4SZ64_META2 1 414 DBREF 6CXH B 1 247 UNP G4SZ63 G4SZ63_META2 1 247 DBREF 6CXH C 1 250 UNP G4SZ62 G4SZ62_META2 1 250 SEQRES 1 A 414 MET LYS ILE ILE LYS ASP LYS VAL ALA LYS LEU SER PHE SEQRES 2 A 414 VAL ALA LEU LEU VAL THR VAL THR ALA ALA MET PHE TYR SEQRES 3 A 414 THR PRO THR ALA SER ALA HIS GLY GLU LYS SER GLN ALA SEQRES 4 A 414 ALA PHE MET ARG MET ARG THR ILE HIS TRP PHE ASP LEU SEQRES 5 A 414 ASN TRP SER LYS ASP GLN VAL SER VAL ASN GLU THR MET SEQRES 6 A 414 SER ILE SER GLY LYS PHE HIS VAL PHE ALA GLY TRP PRO SEQRES 7 A 414 GLU THR VAL ASP LYS PRO GLU VAL ALA PHE LEU ASN ILE SEQRES 8 A 414 GLY ILE PRO GLY PRO VAL PHE ILE ARG ALA GLY SER TRP SEQRES 9 A 414 ILE GLY GLY GLN LEU VAL PRO ARG SER VAL SER LEU GLU SEQRES 10 A 414 LEU GLY GLU THR TYR GLU PHE LYS VAL LEU LEU LYS ALA SEQRES 11 A 414 ARG ARG PRO GLY ASP TRP HIS VAL HIS THR MET MET ASN SEQRES 12 A 414 VAL GLN GLY GLY GLY PRO ILE ILE GLY PRO GLY LYS TRP SEQRES 13 A 414 VAL THR ILE THR GLY SER MET GLY ASP PHE LYS ASN PRO SEQRES 14 A 414 ILE THR THR LEU THR GLY GLU THR ILE ASP LEU GLU THR SEQRES 15 A 414 TYR ALA LEU ASP GLY VAL TYR GLY TRP HIS LEU PHE TRP SEQRES 16 A 414 TYR LEU LEU GLY VAL ALA TRP MET VAL TYR TRP CYS ARG SEQRES 17 A 414 LYS PRO VAL PHE ILE PRO ARG ARG ILE ALA VAL ASP ALA SEQRES 18 A 414 GLY LYS ALA ASP SER LEU ILE THR PRO THR ASP LYS LYS SEQRES 19 A 414 VAL GLY MET ALA PHE ALA ALA GLY THR LEU ALA ILE VAL SEQRES 20 A 414 ALA VAL SER MET GLY GLN ALA ASN GLU LYS TYR PRO VAL SEQRES 21 A 414 THR THR PRO LEU GLN ALA GLY LEU MET ARG GLY ILE LYS SEQRES 22 A 414 SER LEU GLU LEU PRO GLN PRO THR VAL SER VAL LYS VAL SEQRES 23 A 414 VAL ASP ALA SER TYR ARG VAL PRO GLY ARG ALA MET GLN SEQRES 24 A 414 MET THR LEU GLU ILE THR ASN ASN GLY ASP SER ALA VAL SEQRES 25 A 414 ARG LEU ALA GLU PHE ASN THR ALA SER VAL ARG PHE LEU SEQRES 26 A 414 ASP ALA ASP VAL TYR GLU ASP ASP THR ASN TYR PRO ASP SEQRES 27 A 414 ASP LEU LEU ALA GLU GLU GLY LEU SER VAL SER ASP ASN SEQRES 28 A 414 SER PRO LEU ALA PRO GLY GLU THR ARG THR VAL ASP VAL SEQRES 29 A 414 THR ALA SER ASP ALA ALA TRP GLU VAL TYR ARG LEU ALA SEQRES 30 A 414 ASP LEU ILE TYR ASP PRO ASP SER ARG PHE ALA GLY LEU SEQRES 31 A 414 LEU PHE PHE ILE ASP GLU ASP GLY ASN ARG GLN MET THR SEQRES 32 A 414 MET VAL ASP ALA PRO LEU ILE PRO THR PHE ILE SEQRES 1 B 247 MET SER ALA SER GLN SER ALA VAL ARG SER ARG ALA GLU SEQRES 2 B 247 ALA VAL LYS VAL SER ARG THR PHE ASP TYR MET ILE LEU SEQRES 3 B 247 PHE THR VAL PHE PHE VAL VAL LEU GLY GLY TYR HIS ILE SEQRES 4 B 247 HIS TYR MET LEU THR GLY GLY ASP TRP ASP PHE TRP THR SEQRES 5 B 247 ASP TRP LYS ASP ARG ARG LEU TRP VAL THR VAL ALA PRO SEQRES 6 B 247 ILE VAL SER ILE THR PHE PRO ALA ALA VAL GLN ALA VAL SEQRES 7 B 247 LEU TRP TRP ARG TYR ARG ILE ALA TRP GLY ALA THR LEU SEQRES 8 B 247 CYS VAL LEU GLY LEU LEU LEU GLY GLU TRP ILE ASN ARG SEQRES 9 B 247 TYR PHE ASN PHE TRP GLY TRP THR TYR PHE PRO VAL ASN SEQRES 10 B 247 PHE VAL PHE PRO SER ASN LEU MET PRO GLY ALA ILE VAL SEQRES 11 B 247 LEU ASP VAL ILE LEU MET LEU SER ASN SER MET THR LEU SEQRES 12 B 247 THR ALA VAL VAL GLY GLY LEU ALA TRP GLY LEU LEU PHE SEQRES 13 B 247 TYR PRO GLY ASN TRP PRO ILE ILE ALA PRO LEU HIS VAL SEQRES 14 B 247 PRO VAL GLU TYR ASN GLY MET MET MET THR LEU ALA ASP SEQRES 15 B 247 LEU GLN GLY TYR HIS TYR VAL ARG THR GLY THR PRO GLU SEQRES 16 B 247 TYR ILE ARG MET VAL GLU LYS GLY THR LEU ARG THR PHE SEQRES 17 B 247 GLY LYS ASP VAL ALA PRO VAL SER ALA PHE PHE SER GLY SEQRES 18 B 247 PHE VAL SER ILE LEU ILE TYR PHE LEU TRP HIS PHE PHE SEQRES 19 B 247 GLY SER TRP PHE GLY SER GLU LYS PHE VAL GLN ALA ALA SEQRES 1 C 250 MET ALA ALA THR THR GLU SER VAL LYS ALA ASP ALA ALA SEQRES 2 C 250 GLU ALA PRO LEU LEU ASN LYS LYS ASN ILE ILE ALA GLY SEQRES 3 C 250 ALA SER LEU TYR LEU VAL PHE TYR ALA TRP VAL ARG TRP SEQRES 4 C 250 TYR GLU GLY VAL TYR GLY TRP SER ALA GLY LEU ASP SER SEQRES 5 C 250 PHE ALA PRO GLU PHE GLU THR TYR TRP MET ASN PHE LEU SEQRES 6 C 250 TYR ILE GLU MET VAL LEU GLU VAL LEU THR ALA SER VAL SEQRES 7 C 250 LEU TRP GLY TYR ILE TRP LYS SER ARG ASP ARG LYS VAL SEQRES 8 C 250 MET SER ILE THR PRO ARG GLU GLU LEU ARG ARG HIS PHE SEQRES 9 C 250 THR HIS TRP THR TRP LEU MET MET TYR GLY ILE ALA ILE SEQRES 10 C 250 TYR PHE GLY ALA SER TYR PHE THR GLU GLN ASP GLY THR SEQRES 11 C 250 TRP HIS GLN THR ILE VAL ARG ASP THR ASP PHE THR PRO SEQRES 12 C 250 SER HIS ILE ILE GLU PHE TYR LEU SER TYR PRO ILE TYR SEQRES 13 C 250 ILE ILE THR GLY GLY ALA SER PHE LEU TYR ALA LYS THR SEQRES 14 C 250 ARG LEU PRO THR TYR GLN GLN GLY LEU SER LEU GLN TYR SEQRES 15 C 250 LEU VAL VAL VAL VAL GLY PRO PHE MET ILE LEU PRO ASN SEQRES 16 C 250 VAL GLY LEU ASN GLU TRP GLY HIS THR PHE TRP PHE MET SEQRES 17 C 250 GLU GLU LEU PHE VAL ALA PRO LEU HIS TYR GLY PHE VAL SEQRES 18 C 250 PHE PHE GLY TRP SER ALA LEU GLY VAL LEU GLY VAL ILE SEQRES 19 C 250 ASN ILE GLU LEU GLY ALA LEU SER LYS LEU LEU LYS LYS SEQRES 20 C 250 ASP LEU ALA HET CU A 501 1 HET CM5 A 502 34 HET CM5 C 301 34 HETNAM CU COPPER (II) ION HETNAM CM5 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE HETSYN CM5 5-CYCLOHEXYLPENTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D- HETSYN 2 CM5 GLUCOPYRANOSIDE; CYMAL-5 FORMUL 4 CU CU 2+ FORMUL 5 CM5 2(C23 H42 O11) HELIX 1 AA1 GLY A 34 GLN A 38 5 5 HELIX 2 AA2 ALA A 39 ARG A 45 1 7 HELIX 3 AA3 SER A 162 PHE A 166 5 5 HELIX 4 AA4 ALA A 184 ARG A 208 1 25 HELIX 5 AA5 PHE A 212 ALA A 221 1 10 HELIX 6 AA6 ALA A 224 ILE A 228 5 5 HELIX 7 AA7 THR A 229 GLN A 253 1 25 HELIX 8 AA8 GLN A 253 TYR A 258 1 6 HELIX 9 AA9 ALA A 369 TYR A 374 1 6 HELIX 10 AB1 ARG A 375 ASP A 382 5 8 HELIX 11 AB2 SER B 10 GLY B 45 1 36 HELIX 12 AB3 GLY B 45 TRP B 51 1 7 HELIX 13 AB4 ARG B 58 ILE B 69 1 12 HELIX 14 AB5 ILE B 69 ARG B 84 1 16 HELIX 15 AB6 TRP B 87 ASN B 107 1 21 HELIX 16 AB7 LEU B 124 LEU B 137 1 14 HELIX 17 AB8 SER B 140 LEU B 155 1 16 HELIX 18 AB9 ASN B 160 ALA B 165 1 6 HELIX 19 AC1 PRO B 166 HIS B 168 5 3 HELIX 20 AC2 LEU B 180 TYR B 188 1 9 HELIX 21 AC3 PRO B 194 ARG B 198 5 5 HELIX 22 AC4 VAL B 212 GLY B 239 1 28 HELIX 23 AC5 THR C 95 ALA C 121 1 27 HELIX 24 AC6 ILE C 158 ARG C 170 1 13 HELIX 25 AC7 LEU C 171 GLN C 175 5 5 HELIX 26 AC8 SER C 179 VAL C 185 1 7 HELIX 27 AC9 PHE C 220 LEU C 228 1 9 HELIX 28 AD1 GLY C 229 LYS C 246 1 18 SHEET 1 AA1 4 ILE A 47 TRP A 54 0 SHEET 2 AA1 4 THR A 64 VAL A 73 -1 O SER A 68 N ASN A 53 SHEET 3 AA1 4 THR A 121 ALA A 130 -1 O LEU A 128 N MET A 65 SHEET 4 AA1 4 PHE A 98 ILE A 105 -1 N TRP A 104 O LYS A 125 SHEET 1 AA2 4 GLN A 58 SER A 60 0 SHEET 2 AA2 4 GLY A 148 THR A 160 1 O THR A 158 N VAL A 59 SHEET 3 AA2 4 GLY A 134 VAL A 144 -1 N TRP A 136 O VAL A 157 SHEET 4 AA2 4 ALA A 87 GLY A 92 -1 N GLY A 92 O HIS A 139 SHEET 1 AA3 2 PRO A 169 THR A 171 0 SHEET 2 AA3 2 THR A 177 ASP A 179 -1 O ILE A 178 N ILE A 170 SHEET 1 AA4 3 GLY A 357 THR A 361 0 SHEET 2 AA4 3 ALA A 297 ASN A 306 -1 N ASN A 306 O GLY A 357 SHEET 3 AA4 3 VAL A 364 SER A 367 -1 O ALA A 366 N MET A 298 SHEET 1 AA5 4 GLY A 357 THR A 361 0 SHEET 2 AA5 4 ALA A 297 ASN A 306 -1 N ASN A 306 O GLY A 357 SHEET 3 AA5 4 VAL A 282 ARG A 292 -1 N SER A 290 O GLN A 299 SHEET 4 AA5 4 ILE A 410 THR A 412 1 O THR A 412 N TYR A 291 SHEET 1 AA6 5 LEU A 341 ALA A 342 0 SHEET 2 AA6 5 VAL A 322 LEU A 325 1 N LEU A 325 O ALA A 342 SHEET 3 AA6 5 VAL A 312 THR A 319 -1 N PHE A 317 O PHE A 324 SHEET 4 AA6 5 ARG A 386 ASP A 395 -1 O LEU A 390 N ASN A 318 SHEET 5 AA6 5 ARG A 400 PRO A 408 -1 O THR A 403 N LEU A 391 SHEET 1 AA7 2 PRO B 170 TYR B 173 0 SHEET 2 AA7 2 MET B 176 THR B 179 -1 O MET B 176 N TYR B 173 LINK N HIS A 33 CU CU A 501 1555 1555 1.86 LINK ND1 HIS A 33 CU CU A 501 1555 1555 2.53 LINK ND1 HIS A 137 CU CU A 501 1555 1555 2.13 LINK NE2 HIS A 139 CU CU A 501 1555 1555 2.13 CISPEP 1 GLY A 175 GLU A 176 0 -6.55 CISPEP 2 VAL A 293 PRO A 294 0 -3.77 CISPEP 3 LYS B 210 ASP B 211 0 14.64 SITE 1 AC1 3 HIS A 33 HIS A 137 HIS A 139 SITE 1 AC2 6 MET A 203 VAL A 204 CYS A 207 ARG A 208 SITE 2 AC2 6 ARG B 19 TYR B 23 SITE 1 AC3 7 GLU B 13 LYS B 16 VAL B 17 THR B 20 SITE 2 AC3 7 ARG C 101 PHE C 104 MET C 111 CRYST1 143.840 143.840 146.152 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006952 0.004014 0.000000 0.00000 SCALE2 0.000000 0.008028 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006842 0.00000