HEADER OXIDOREDUCTASE/INHIBITOR 03-APR-18 6CXM TITLE CRYSTAL STRUCTURE OF A DIHYDROFOLATE REDUCTASE FROM MYCOBACTERIUM TITLE 2 SMEGMATIS IN COMPLEX WITH NADP AND P218 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.5.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS (STRAIN ATCC 700084 / SOURCE 3 MC(2)155); SOURCE 4 ORGANISM_TAXID: 246196; SOURCE 5 STRAIN: ATCC 700084 / MC(2)155; SOURCE 6 GENE: FOLA, MSMEI_2607; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NIAID, NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASE, KEYWDS 2 STRUCTURAL GENOMICS, MYCOBACTERIUM TUBERCULOSIS, MTB, INHIBITOR, KEYWDS 3 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, KEYWDS 4 OXIDOREDUCTASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 04-OCT-23 6CXM 1 REMARK REVDAT 1 11-APR-18 6CXM 0 JRNL AUTH T.E.EDWARDS,J.ABENDROTH,D.D.LORIMER,P.S.HORANYI, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL TITL CRYSTAL STRUCTURE OF A DIHYDROFOLATE REDUCTASE FROM JRNL TITL 2 MYCOBACTERIUM SMEGMATIS IN COMPLEX WITH NADP AND P218 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 9837 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.180 REMARK 3 FREE R VALUE TEST SET COUNT : 903 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.9678 - 4.8114 0.96 1517 162 0.1581 0.2261 REMARK 3 2 4.8114 - 3.8206 0.96 1454 173 0.1589 0.2159 REMARK 3 3 3.8206 - 3.3382 0.97 1459 152 0.2127 0.2610 REMARK 3 4 3.3382 - 3.0332 0.98 1504 130 0.2305 0.2979 REMARK 3 5 3.0332 - 2.8159 0.99 1509 139 0.2581 0.3310 REMARK 3 6 2.8159 - 2.6499 0.99 1491 147 0.2974 0.3426 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8081 -2.2975 17.7996 REMARK 3 T TENSOR REMARK 3 T11: 0.4037 T22: 0.3751 REMARK 3 T33: 0.4280 T12: 0.0620 REMARK 3 T13: 0.0099 T23: -0.0992 REMARK 3 L TENSOR REMARK 3 L11: 2.0355 L22: 2.6827 REMARK 3 L33: 1.8128 L12: -0.4877 REMARK 3 L13: 0.3466 L23: -0.0335 REMARK 3 S TENSOR REMARK 3 S11: -0.2576 S12: -0.3055 S13: 0.2058 REMARK 3 S21: 0.5559 S22: 0.1582 S23: -0.0332 REMARK 3 S31: -0.1999 S32: 0.1489 S33: 0.0676 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3848 -9.8724 25.9869 REMARK 3 T TENSOR REMARK 3 T11: 0.5061 T22: 0.6114 REMARK 3 T33: 0.3940 T12: 0.0368 REMARK 3 T13: 0.0741 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 1.5736 L22: 3.5939 REMARK 3 L33: 7.0495 L12: -0.1022 REMARK 3 L13: 2.1784 L23: 0.8313 REMARK 3 S TENSOR REMARK 3 S11: -0.5151 S12: -1.1789 S13: -0.3602 REMARK 3 S21: 0.5775 S22: 0.0969 S23: -0.0422 REMARK 3 S31: 0.4671 S32: -0.2811 S33: 0.5843 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 95 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.5426 -10.7781 9.7155 REMARK 3 T TENSOR REMARK 3 T11: 0.2788 T22: 0.3230 REMARK 3 T33: 0.3272 T12: -0.0176 REMARK 3 T13: 0.0752 T23: -0.0672 REMARK 3 L TENSOR REMARK 3 L11: 1.4222 L22: 3.5599 REMARK 3 L33: 5.6824 L12: 0.4114 REMARK 3 L13: 0.1634 L23: -2.7347 REMARK 3 S TENSOR REMARK 3 S11: -0.0598 S12: -0.4317 S13: 0.0439 REMARK 3 S21: 0.0004 S22: 0.0351 S23: -0.0706 REMARK 3 S31: 0.1346 S32: 0.6301 S33: -0.1603 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 129 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2452 -13.5529 3.5517 REMARK 3 T TENSOR REMARK 3 T11: 0.2799 T22: 0.3344 REMARK 3 T33: 0.3395 T12: -0.0000 REMARK 3 T13: 0.0149 T23: -0.0370 REMARK 3 L TENSOR REMARK 3 L11: 3.9214 L22: 5.9060 REMARK 3 L33: 3.0561 L12: -2.2146 REMARK 3 L13: 1.4418 L23: -3.8758 REMARK 3 S TENSOR REMARK 3 S11: 0.0125 S12: -0.0499 S13: -0.2492 REMARK 3 S21: 0.4964 S22: -0.0018 S23: 0.3794 REMARK 3 S31: -0.3861 S32: 0.2500 S33: 0.0096 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.9442 -14.4881 14.2869 REMARK 3 T TENSOR REMARK 3 T11: 0.2847 T22: 0.3351 REMARK 3 T33: 0.5148 T12: 0.0650 REMARK 3 T13: -0.0853 T23: -0.0640 REMARK 3 L TENSOR REMARK 3 L11: 3.0947 L22: 1.3909 REMARK 3 L33: 3.5403 L12: -0.3329 REMARK 3 L13: 0.3459 L23: 0.2377 REMARK 3 S TENSOR REMARK 3 S11: -0.1376 S12: -0.4160 S13: 0.2762 REMARK 3 S21: 0.1616 S22: 0.0547 S23: -0.3088 REMARK 3 S31: -0.3156 S32: 0.0459 S33: 0.1356 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 67 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.2949 -12.9875 31.3004 REMARK 3 T TENSOR REMARK 3 T11: 0.6051 T22: 0.8593 REMARK 3 T33: 0.8699 T12: 0.0054 REMARK 3 T13: -0.1852 T23: -0.1148 REMARK 3 L TENSOR REMARK 3 L11: 0.6215 L22: 0.9587 REMARK 3 L33: 5.6429 L12: 0.7678 REMARK 3 L13: 1.8313 L23: 2.3128 REMARK 3 S TENSOR REMARK 3 S11: -0.1986 S12: -0.5817 S13: -0.0125 REMARK 3 S21: 0.8434 S22: -0.1922 S23: -0.4480 REMARK 3 S31: 0.0575 S32: 0.4346 S33: 0.1863 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 78 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.7832 -21.7870 24.0833 REMARK 3 T TENSOR REMARK 3 T11: 0.5273 T22: 0.5685 REMARK 3 T33: 0.4193 T12: 0.0978 REMARK 3 T13: -0.0342 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 4.3456 L22: 4.2151 REMARK 3 L33: 6.4982 L12: 0.8302 REMARK 3 L13: 2.3227 L23: 1.4456 REMARK 3 S TENSOR REMARK 3 S11: -0.2024 S12: -0.8147 S13: -0.2414 REMARK 3 S21: 0.8778 S22: -0.3241 S23: -0.0680 REMARK 3 S31: 0.7925 S32: -0.0325 S33: 0.0083 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.2550 -23.5914 5.4503 REMARK 3 T TENSOR REMARK 3 T11: 0.2574 T22: 0.3278 REMARK 3 T33: 0.5121 T12: 0.0511 REMARK 3 T13: -0.0437 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 2.4716 L22: 1.6429 REMARK 3 L33: 1.6516 L12: 0.7254 REMARK 3 L13: -0.2178 L23: -0.3563 REMARK 3 S TENSOR REMARK 3 S11: -0.1681 S12: -0.3341 S13: 0.0046 REMARK 3 S21: 0.0678 S22: 0.1082 S23: -0.0867 REMARK 3 S31: 0.0054 S32: -0.0214 S33: 0.0738 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 2 THROUGH 74 OR REMARK 3 (RESID 75 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 76 REMARK 3 THROUGH 84 OR (RESID 85 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 86 THROUGH 120 OR (RESID 121 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 122 THROUGH 154 OR REMARK 3 (RESID 155 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 156 OR REMARK 3 RESID 201 THROUGH 202)) REMARK 3 SELECTION : (CHAIN B AND (RESID 2 THROUGH 33 OR REMARK 3 (RESID 34 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 35 REMARK 3 THROUGH 81 OR (RESID 82 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 83 THROUGH 156 OR RESID 201 REMARK 3 THROUGH 202)) REMARK 3 ATOM PAIRS NUMBER : 1114 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CXM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233668. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9854 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 33.965 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 2.995 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.13 REMARK 200 R MERGE FOR SHELL (I) : 0.55300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1DF7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MYSMA.01062.A.B1.PS38260 AT 8.81 MG/ML REMARK 280 WITH 3 MM NADP AND 3 MM P218 AGAINST MCSG1 SCREEN CONDITION G6 REMARK 280 0.1 M SODIUM ACETATE PH 4.5, 25% PEG 3350 SUPPLEMENTED WITH 15% REMARK 280 ETHYLENE GLYCOL AS CRYO-PROTECTANT, CRYSTAL TRACKING ID 292198G6, REMARK 280 UNIQUE PUCK ID VSF3-2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.15000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 24 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 82 CG OD1 OD2 REMARK 470 ARG A 104 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 24 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 73 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 75 CG CD OE1 OE2 REMARK 470 ASP B 85 CG OD1 OD2 REMARK 470 ARG B 104 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 121 CG OD1 OD2 REMARK 470 ARG B 155 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU B 51 NH1 ARG B 56 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 22 57.63 -90.62 REMARK 500 TRP A 23 156.59 179.84 REMARK 500 ASP A 85 60.88 -100.03 REMARK 500 ALA A 116 87.15 -68.50 REMARK 500 ASP A 131 7.21 -69.16 REMARK 500 ASP B 85 57.68 -98.54 REMARK 500 ALA B 116 88.34 -68.82 REMARK 500 ASP B 131 8.14 -68.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MMV A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MMV B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5U26 RELATED DB: PDB REMARK 900 SAME PROTEIN WITH LIGANDS FROM MYCOBACTERIUM TUBERCULOSIS REMARK 900 RELATED ID: SSGCID-MYSMA.01062.A RELATED DB: TARGETTRACK DBREF 6CXM A 1 156 UNP I7FC10 I7FC10_MYCS2 1 156 DBREF 6CXM B 1 156 UNP I7FC10 I7FC10_MYCS2 1 156 SEQADV 6CXM MET A -7 UNP I7FC10 INITIATING METHIONINE SEQADV 6CXM ALA A -6 UNP I7FC10 EXPRESSION TAG SEQADV 6CXM HIS A -5 UNP I7FC10 EXPRESSION TAG SEQADV 6CXM HIS A -4 UNP I7FC10 EXPRESSION TAG SEQADV 6CXM HIS A -3 UNP I7FC10 EXPRESSION TAG SEQADV 6CXM HIS A -2 UNP I7FC10 EXPRESSION TAG SEQADV 6CXM HIS A -1 UNP I7FC10 EXPRESSION TAG SEQADV 6CXM HIS A 0 UNP I7FC10 EXPRESSION TAG SEQADV 6CXM MET B -7 UNP I7FC10 INITIATING METHIONINE SEQADV 6CXM ALA B -6 UNP I7FC10 EXPRESSION TAG SEQADV 6CXM HIS B -5 UNP I7FC10 EXPRESSION TAG SEQADV 6CXM HIS B -4 UNP I7FC10 EXPRESSION TAG SEQADV 6CXM HIS B -3 UNP I7FC10 EXPRESSION TAG SEQADV 6CXM HIS B -2 UNP I7FC10 EXPRESSION TAG SEQADV 6CXM HIS B -1 UNP I7FC10 EXPRESSION TAG SEQADV 6CXM HIS B 0 UNP I7FC10 EXPRESSION TAG SEQRES 1 A 164 MET ALA HIS HIS HIS HIS HIS HIS MET SER MET ARG LEU SEQRES 2 A 164 ILE TRP ALA GLN SER THR SER GLY ILE ILE GLY ARG ASP SEQRES 3 A 164 ASN SER ILE PRO TRP ARG LEU PRO GLU ASP LEU ALA ARG SEQRES 4 A 164 PHE LYS GLU MET THR MET GLY HIS PRO VAL VAL MET GLY SEQRES 5 A 164 ARG LEU THR TRP GLU SER LEU PRO ALA SER VAL ARG PRO SEQRES 6 A 164 LEU PRO GLY ARG ARG ASN ILE VAL VAL THR ARG ASP ALA SEQRES 7 A 164 ASP TYR ARG ALA GLU GLY ALA GLU VAL VAL THR ASP LEU SEQRES 8 A 164 PRO ASP GLU PRO ASP ALA TRP VAL ILE GLY GLY ALA GLN SEQRES 9 A 164 ILE TYR ALA MET ALA LEU ALA ARG ALA ASP ARG CYS GLU SEQRES 10 A 164 VAL THR GLU VAL ASP ILE ALA LEU THR PRO LEU ASP GLY SEQRES 11 A 164 ASP ALA ARG ALA PRO VAL LEU ASP ASP SER TRP VAL ALA SEQRES 12 A 164 THR THR GLY GLU TRP GLN THR SER THR SER GLY LEU ARG SEQRES 13 A 164 PHE ARG PHE CYS SER TYR ARG ARG SEQRES 1 B 164 MET ALA HIS HIS HIS HIS HIS HIS MET SER MET ARG LEU SEQRES 2 B 164 ILE TRP ALA GLN SER THR SER GLY ILE ILE GLY ARG ASP SEQRES 3 B 164 ASN SER ILE PRO TRP ARG LEU PRO GLU ASP LEU ALA ARG SEQRES 4 B 164 PHE LYS GLU MET THR MET GLY HIS PRO VAL VAL MET GLY SEQRES 5 B 164 ARG LEU THR TRP GLU SER LEU PRO ALA SER VAL ARG PRO SEQRES 6 B 164 LEU PRO GLY ARG ARG ASN ILE VAL VAL THR ARG ASP ALA SEQRES 7 B 164 ASP TYR ARG ALA GLU GLY ALA GLU VAL VAL THR ASP LEU SEQRES 8 B 164 PRO ASP GLU PRO ASP ALA TRP VAL ILE GLY GLY ALA GLN SEQRES 9 B 164 ILE TYR ALA MET ALA LEU ALA ARG ALA ASP ARG CYS GLU SEQRES 10 B 164 VAL THR GLU VAL ASP ILE ALA LEU THR PRO LEU ASP GLY SEQRES 11 B 164 ASP ALA ARG ALA PRO VAL LEU ASP ASP SER TRP VAL ALA SEQRES 12 B 164 THR THR GLY GLU TRP GLN THR SER THR SER GLY LEU ARG SEQRES 13 B 164 PHE ARG PHE CYS SER TYR ARG ARG HET NAP A 201 48 HET MMV A 202 26 HET NAP B 201 48 HET MMV B 202 26 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM MMV 3-(2-{3-[(2,4-DIAMINO-6-ETHYLPYRIMIDIN-5-YL) HETNAM 2 MMV OXY]PROPOXY}PHENYL)PROPANOIC ACID HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 MMV 2(C18 H24 N4 O4) FORMUL 7 HOH *48(H2 O) HELIX 1 AA1 LEU A 25 MET A 37 1 13 HELIX 2 AA2 ARG A 45 LEU A 51 1 7 HELIX 3 AA3 PRO A 52 ARG A 56 5 5 HELIX 4 AA4 GLY A 94 ALA A 103 1 10 HELIX 5 AA5 LEU B 25 MET B 37 1 13 HELIX 6 AA6 ARG B 45 LEU B 51 1 7 HELIX 7 AA7 PRO B 52 ARG B 56 5 5 HELIX 8 AA8 GLY B 94 LEU B 102 1 9 SHEET 1 AA1 4 MET A 3 SER A 10 0 SHEET 2 AA1 4 ALA A 105 VAL A 113 1 O GLU A 109 N LEU A 5 SHEET 3 AA1 4 ARG A 148 ARG A 155 -1 O CYS A 152 N VAL A 110 SHEET 4 AA1 4 VAL A 134 THR A 137 -1 N VAL A 134 O ARG A 155 SHEET 1 AA2 4 MET A 3 SER A 10 0 SHEET 2 AA2 4 ALA A 105 VAL A 113 1 O GLU A 109 N LEU A 5 SHEET 3 AA2 4 ARG A 148 ARG A 155 -1 O CYS A 152 N VAL A 110 SHEET 4 AA2 4 GLN A 141 THR A 142 -1 N GLN A 141 O PHE A 149 SHEET 1 AA3 2 ILE A 14 GLY A 16 0 SHEET 2 AA3 2 ALA A 124 ARG A 125 -1 O ALA A 124 N GLY A 16 SHEET 1 AA4 4 GLU A 78 VAL A 80 0 SHEET 2 AA4 4 ASN A 63 VAL A 66 1 N VAL A 65 O GLU A 78 SHEET 3 AA4 4 VAL A 41 GLY A 44 1 N MET A 43 O ILE A 64 SHEET 4 AA4 4 TRP A 90 VAL A 91 1 O TRP A 90 N VAL A 42 SHEET 1 AA5 4 MET B 3 SER B 10 0 SHEET 2 AA5 4 ALA B 105 ASP B 114 1 O GLU B 109 N LEU B 5 SHEET 3 AA5 4 ARG B 148 ARG B 155 -1 O ARG B 148 N ASP B 114 SHEET 4 AA5 4 VAL B 134 THR B 137 -1 N VAL B 134 O ARG B 155 SHEET 1 AA6 4 MET B 3 SER B 10 0 SHEET 2 AA6 4 ALA B 105 ASP B 114 1 O GLU B 109 N LEU B 5 SHEET 3 AA6 4 ARG B 148 ARG B 155 -1 O ARG B 148 N ASP B 114 SHEET 4 AA6 4 GLN B 141 THR B 142 -1 N GLN B 141 O PHE B 149 SHEET 1 AA7 2 ILE B 14 GLY B 16 0 SHEET 2 AA7 2 ALA B 124 ARG B 125 -1 O ALA B 124 N GLY B 16 SHEET 1 AA8 4 GLU B 78 VAL B 80 0 SHEET 2 AA8 4 ASN B 63 VAL B 66 1 N VAL B 65 O GLU B 78 SHEET 3 AA8 4 VAL B 41 GLY B 44 1 N MET B 43 O VAL B 66 SHEET 4 AA8 4 TRP B 90 VAL B 91 1 O TRP B 90 N VAL B 42 CISPEP 1 ARG A 56 PRO A 57 0 0.85 CISPEP 2 GLY A 93 GLY A 94 0 4.84 CISPEP 3 ARG B 56 PRO B 57 0 0.93 CISPEP 4 GLY B 93 GLY B 94 0 5.42 SITE 1 AC1 23 TRP A 7 ALA A 8 ILE A 15 GLY A 16 SITE 2 AC1 23 ASN A 19 SER A 20 ILE A 21 GLY A 44 SITE 3 AC1 23 ARG A 45 LEU A 46 THR A 47 VAL A 66 SITE 4 AC1 23 THR A 67 ARG A 68 THR A 81 ILE A 92 SITE 5 AC1 23 GLY A 93 GLY A 94 ALA A 95 GLN A 96 SITE 6 AC1 23 ILE A 97 MET A 100 MMV A 202 SITE 1 AC2 13 ILE A 6 TRP A 7 ASP A 28 LEU A 29 SITE 2 AC2 13 PHE A 32 VAL A 55 LEU A 58 PRO A 59 SITE 3 AC2 13 ARG A 61 ILE A 92 TYR A 98 THR A 111 SITE 4 AC2 13 NAP A 201 SITE 1 AC3 24 TRP B 7 ALA B 8 ILE B 15 GLY B 16 SITE 2 AC3 24 ASN B 19 SER B 20 ILE B 21 GLY B 44 SITE 3 AC3 24 ARG B 45 LEU B 46 THR B 47 SER B 50 SITE 4 AC3 24 VAL B 66 THR B 67 ARG B 68 THR B 81 SITE 5 AC3 24 ILE B 92 GLY B 93 GLY B 94 ALA B 95 SITE 6 AC3 24 GLN B 96 ILE B 97 MET B 100 MMV B 202 SITE 1 AC4 12 ILE B 6 TRP B 7 ILE B 21 ASP B 28 SITE 2 AC4 12 PHE B 32 LYS B 33 LEU B 51 ARG B 61 SITE 3 AC4 12 ILE B 92 TYR B 98 NAP B 201 HOH B 303 CRYST1 63.250 40.300 67.220 90.00 93.86 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015810 0.000000 0.001067 0.00000 SCALE2 0.000000 0.024814 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014910 0.00000