HEADER IMMUNE SYSTEM 11-APR-18 6D0X TITLE CRYSTAL STRUCTURE OF CHIMERIC H.2140 / K.1210 FAB IN COMPLEX WITH TITLE 2 CIRCUMSPOROZOITE PROTEIN NANP3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2140 ANTIBODY, HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 1210 ANTIBODY, LIGHT CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: NANP3; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 18 ORGANISM_TAXID: 5833 KEYWDS MALARIA, ANTIBODY, CIRCUMSPOROZOITE PROTEIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.W.SCALLY,A.BOSCH,K.IMKELLER,H.WARDEMANN,J.P.JULIEN REVDAT 3 04-JUL-18 6D0X 1 JRNL REVDAT 2 20-JUN-18 6D0X 1 JRNL REVDAT 1 13-JUN-18 6D0X 0 JRNL AUTH K.IMKELLER,S.W.SCALLY,A.BOSCH,G.P.MARTI,G.COSTA,G.TRILLER, JRNL AUTH 2 R.MURUGAN,V.RENNA,H.JUMAA,P.G.KREMSNER,B.K.L.SIM, JRNL AUTH 3 S.L.HOFFMAN,B.MORDMULLER,E.A.LEVASHINA,J.P.JULIEN, JRNL AUTH 4 H.WARDEMANN JRNL TITL ANTIHOMOTYPIC AFFINITY MATURATION IMPROVES HUMAN B CELL JRNL TITL 2 RESPONSES AGAINST A REPETITIVE EPITOPE. JRNL REF SCIENCE V. 360 1358 2018 JRNL REFN ESSN 1095-9203 JRNL PMID 29880723 JRNL DOI 10.1126/SCIENCE.AAR5304 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 47836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.180 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.3004 - 4.4535 1.00 3544 153 0.1531 0.1863 REMARK 3 2 4.4535 - 3.5356 1.00 3359 148 0.1469 0.1703 REMARK 3 3 3.5356 - 3.0889 1.00 3297 143 0.1777 0.1925 REMARK 3 4 3.0889 - 2.8065 1.00 3298 144 0.1970 0.2094 REMARK 3 5 2.8065 - 2.6054 1.00 3282 143 0.2021 0.2214 REMARK 3 6 2.6054 - 2.4518 1.00 3239 142 0.2045 0.2871 REMARK 3 7 2.4518 - 2.3290 1.00 3285 143 0.2090 0.2598 REMARK 3 8 2.3290 - 2.2277 1.00 3228 140 0.1984 0.2592 REMARK 3 9 2.2277 - 2.1419 1.00 3222 141 0.1976 0.2397 REMARK 3 10 2.1419 - 2.0680 1.00 3232 142 0.2071 0.2282 REMARK 3 11 2.0680 - 2.0034 1.00 3248 141 0.2145 0.2555 REMARK 3 12 2.0034 - 1.9461 1.00 3222 140 0.2338 0.2740 REMARK 3 13 1.9461 - 1.8949 1.00 3198 140 0.2677 0.3224 REMARK 3 14 1.8949 - 1.8486 0.99 3183 139 0.3080 0.3240 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3472 REMARK 3 ANGLE : 1.211 4744 REMARK 3 CHIRALITY : 0.082 532 REMARK 3 PLANARITY : 0.009 611 REMARK 3 DIHEDRAL : 14.024 2056 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 361.9344 -99.2095 20.4194 REMARK 3 T TENSOR REMARK 3 T11: 0.1755 T22: 0.2774 REMARK 3 T33: 0.2838 T12: -0.0317 REMARK 3 T13: 0.0005 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 2.1568 L22: 1.5108 REMARK 3 L33: 3.3817 L12: -0.9282 REMARK 3 L13: -1.2589 L23: 1.2820 REMARK 3 S TENSOR REMARK 3 S11: 0.0164 S12: 0.1275 S13: 0.0555 REMARK 3 S21: -0.0474 S22: 0.0189 S23: -0.1866 REMARK 3 S31: -0.1226 S32: 0.2681 S33: -0.0494 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 345.3726-110.2783 -16.2008 REMARK 3 T TENSOR REMARK 3 T11: 0.5958 T22: 1.5323 REMARK 3 T33: 0.7612 T12: 0.2249 REMARK 3 T13: -0.2021 T23: -0.3328 REMARK 3 L TENSOR REMARK 3 L11: 3.1121 L22: 4.7716 REMARK 3 L33: 2.0474 L12: 1.8562 REMARK 3 L13: 2.1780 L23: 0.5947 REMARK 3 S TENSOR REMARK 3 S11: 0.3929 S12: 1.1575 S13: -0.8110 REMARK 3 S21: -1.1715 S22: -0.0896 S23: 1.1323 REMARK 3 S31: -0.1802 S32: -1.0892 S33: -0.4055 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 353.5237-105.4904 -11.9142 REMARK 3 T TENSOR REMARK 3 T11: 0.4150 T22: 1.0242 REMARK 3 T33: 0.4303 T12: 0.1125 REMARK 3 T13: -0.0146 T23: -0.0783 REMARK 3 L TENSOR REMARK 3 L11: 5.1452 L22: 3.0584 REMARK 3 L33: 2.9776 L12: -0.2512 REMARK 3 L13: 2.5162 L23: 1.2094 REMARK 3 S TENSOR REMARK 3 S11: -0.0139 S12: 1.2775 S13: 0.1495 REMARK 3 S21: -0.6310 S22: -0.1863 S23: 0.2639 REMARK 3 S31: -0.3638 S32: -0.7957 S33: 0.1767 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 336.8899 -97.2083 18.3898 REMARK 3 T TENSOR REMARK 3 T11: 0.2104 T22: 0.4449 REMARK 3 T33: 0.3209 T12: -0.0193 REMARK 3 T13: 0.0232 T23: -0.1082 REMARK 3 L TENSOR REMARK 3 L11: 4.6853 L22: 8.7800 REMARK 3 L33: 9.5365 L12: -3.4606 REMARK 3 L13: 3.7264 L23: -7.3227 REMARK 3 S TENSOR REMARK 3 S11: 0.2428 S12: 0.2618 S13: 0.0670 REMARK 3 S21: -0.1767 S22: -0.2384 S23: 0.3605 REMARK 3 S31: 0.2317 S32: -0.3343 S33: -0.0276 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 19 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 342.7086 -90.8445 21.8878 REMARK 3 T TENSOR REMARK 3 T11: 0.1982 T22: 0.2247 REMARK 3 T33: 0.2911 T12: 0.0015 REMARK 3 T13: 0.0082 T23: -0.0331 REMARK 3 L TENSOR REMARK 3 L11: 3.2275 L22: 2.0002 REMARK 3 L33: 4.6693 L12: -0.9609 REMARK 3 L13: 1.4537 L23: -0.9664 REMARK 3 S TENSOR REMARK 3 S11: -0.0064 S12: 0.2210 S13: 0.2793 REMARK 3 S21: -0.0339 S22: -0.1294 S23: -0.0471 REMARK 3 S31: -0.2966 S32: -0.1987 S33: 0.1208 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 333.5115 -97.1210 2.1340 REMARK 3 T TENSOR REMARK 3 T11: 0.3405 T22: 1.0786 REMARK 3 T33: 0.7251 T12: 0.2034 REMARK 3 T13: -0.0457 T23: -0.3368 REMARK 3 L TENSOR REMARK 3 L11: 1.8291 L22: 1.3458 REMARK 3 L33: 4.0180 L12: 1.5514 REMARK 3 L13: 2.7000 L23: 2.3590 REMARK 3 S TENSOR REMARK 3 S11: -0.0336 S12: 1.2120 S13: -0.9074 REMARK 3 S21: -0.2821 S22: -0.6570 S23: 0.8619 REMARK 3 S31: -0.2652 S32: -0.6217 S33: 0.5906 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 347.3466-118.0230 -14.4188 REMARK 3 T TENSOR REMARK 3 T11: 0.4280 T22: 1.4727 REMARK 3 T33: 0.8790 T12: 0.0806 REMARK 3 T13: -0.1342 T23: -0.7505 REMARK 3 L TENSOR REMARK 3 L11: 5.8474 L22: 1.1097 REMARK 3 L33: 2.4991 L12: 0.7852 REMARK 3 L13: 1.5674 L23: -0.3113 REMARK 3 S TENSOR REMARK 3 S11: -0.4701 S12: 1.1191 S13: -0.9228 REMARK 3 S21: -0.3029 S22: 0.0018 S23: -0.2619 REMARK 3 S31: 0.1477 S32: 0.1392 S33: 0.1367 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 338.4827-111.8788 -4.6620 REMARK 3 T TENSOR REMARK 3 T11: 0.4828 T22: 1.1894 REMARK 3 T33: 0.7996 T12: 0.0133 REMARK 3 T13: -0.0398 T23: -0.4721 REMARK 3 L TENSOR REMARK 3 L11: 4.8647 L22: 5.6541 REMARK 3 L33: 5.6394 L12: -1.8600 REMARK 3 L13: -0.3805 L23: 2.5729 REMARK 3 S TENSOR REMARK 3 S11: 0.0127 S12: 0.6763 S13: -0.3942 REMARK 3 S21: 0.4408 S22: -0.5672 S23: 0.6400 REMARK 3 S31: 0.3581 S32: -1.1575 S33: 0.5596 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 151 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 340.7584-120.8659 -1.7303 REMARK 3 T TENSOR REMARK 3 T11: 0.5362 T22: 0.9885 REMARK 3 T33: 1.0906 T12: -0.1336 REMARK 3 T13: 0.0427 T23: -0.4111 REMARK 3 L TENSOR REMARK 3 L11: 2.8975 L22: 4.0049 REMARK 3 L33: 6.2954 L12: 2.9729 REMARK 3 L13: 2.5691 L23: 0.7324 REMARK 3 S TENSOR REMARK 3 S11: 0.5121 S12: 0.4409 S13: -1.1969 REMARK 3 S21: 0.1428 S22: -0.5445 S23: 0.9572 REMARK 3 S31: 0.9982 S32: -1.1870 S33: 0.0593 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 164 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 341.5453-114.8095 -6.4522 REMARK 3 T TENSOR REMARK 3 T11: 0.3914 T22: 0.9665 REMARK 3 T33: 0.7459 T12: 0.0337 REMARK 3 T13: -0.0078 T23: -0.3554 REMARK 3 L TENSOR REMARK 3 L11: 3.9383 L22: 6.3014 REMARK 3 L33: 5.4126 L12: 0.4148 REMARK 3 L13: 1.2600 L23: 2.8628 REMARK 3 S TENSOR REMARK 3 S11: 0.1055 S12: 0.8005 S13: -0.9682 REMARK 3 S21: -0.0641 S22: -0.3114 S23: 0.5295 REMARK 3 S31: 0.3415 S32: -0.7312 S33: 0.2176 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 198 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 331.9665-115.7467 -10.1043 REMARK 3 T TENSOR REMARK 3 T11: 0.5135 T22: 1.6531 REMARK 3 T33: 1.0943 T12: 0.0024 REMARK 3 T13: -0.0284 T23: -0.6913 REMARK 3 L TENSOR REMARK 3 L11: 3.3941 L22: 6.9503 REMARK 3 L33: 7.0424 L12: -2.7141 REMARK 3 L13: -3.9985 L23: 4.7670 REMARK 3 S TENSOR REMARK 3 S11: 0.1656 S12: 0.4971 S13: -0.2442 REMARK 3 S21: 0.1640 S22: -0.1047 S23: 0.6877 REMARK 3 S31: 0.3800 S32: 0.2250 S33: -0.0606 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 357.2901 -93.3375 38.3101 REMARK 3 T TENSOR REMARK 3 T11: 0.3831 T22: 0.3647 REMARK 3 T33: 0.3610 T12: -0.0995 REMARK 3 T13: 0.0149 T23: -0.0838 REMARK 3 L TENSOR REMARK 3 L11: 3.6548 L22: 7.6485 REMARK 3 L33: 2.0345 L12: -3.0044 REMARK 3 L13: 0.3701 L23: -7.4567 REMARK 3 S TENSOR REMARK 3 S11: 0.6520 S12: -0.1521 S13: 0.0927 REMARK 3 S21: 1.0156 S22: -0.2619 S23: 0.0144 REMARK 3 S31: -0.6412 S32: 0.4668 S33: -0.4380 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6D0X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233810. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03327 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47923 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 12.20 REMARK 200 R MERGE FOR SHELL (I) : 0.75500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.5, 20% (W/V) PEG4000, REMARK 280 0.6M NACL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.58300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.55650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.55650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 117.87450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.55650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.55650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.29150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.55650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.55650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 117.87450 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.55650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.55650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.29150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 78.58300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 443 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 503 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 214 REMARK 465 SER A 215 REMARK 465 CYS A 216 REMARK 465 GLU B 213 REMARK 465 CYS B 214 REMARK 465 PRO C 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 GLN A 105 CG CD OE1 NE2 REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 LYS A 201 CG CD CE NZ REMARK 470 LYS A 206 CG CD CE NZ REMARK 470 ARG A 210 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 123 CG CD OE1 OE2 REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 LYS B 145 CG CD CE NZ REMARK 470 GLN B 147 CG CD OE1 NE2 REMARK 470 LYS B 149 CG CD CE NZ REMARK 470 LYS B 169 CG CD CE NZ REMARK 470 LYS B 183 CG CD CE NZ REMARK 470 LYS B 190 CG CD CE NZ REMARK 470 ASN B 210 CG OD1 ND2 REMARK 470 ASN C 11 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 92 CA - CB - SG ANGL. DEV. = 8.0 DEGREES REMARK 500 ASP B 1 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 88 161.04 178.03 REMARK 500 SER A 130 -135.88 53.69 REMARK 500 THR A 131 113.42 -173.56 REMARK 500 ASP A 144 63.20 66.80 REMARK 500 SER A 188 0.52 -69.67 REMARK 500 THR A 191 -75.78 -69.50 REMARK 500 SER B 30 -131.21 55.03 REMARK 500 ALA B 51 -36.36 73.68 REMARK 500 ALA B 84 -179.67 -178.28 REMARK 500 TYR B 94 -157.40 54.85 REMARK 500 LYS B 126 0.46 -60.12 REMARK 500 ASN B 138 72.44 52.44 REMARK 500 ARG B 211 66.85 -68.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6D01 RELATED DB: PDB DBREF 6D0X A 1 216 PDB 6D0X 6D0X 1 216 DBREF 6D0X B 1 214 PDB 6D0X 6D0X 1 214 DBREF 6D0X C 1 12 PDB 6D0X 6D0X 1 12 SEQRES 1 A 227 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY VAL VAL GLN SEQRES 2 A 227 PRO GLY THR SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 227 PHE THR PHE SER SER TYR GLY MET HIS TRP VAL ARG GLN SEQRES 4 A 227 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA ILE ILE TRP SEQRES 5 A 227 TYR ASP GLY SER LYS LYS TYR TYR ALA ASP SER VAL LYS SEQRES 6 A 227 GLY ARG PHE THR ILE SER ARG ASP ASN SER ARG ASN THR SEQRES 7 A 227 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 A 227 ALA VAL TYR TYR CYS ALA LYS VAL GLY GLU GLY GLN VAL SEQRES 9 A 227 GLY ASP SER SER GLY TYR TYR ASP HIS TRP GLY GLN GLY SEQRES 10 A 227 THR LEU VAL THR VAL SER SER ALA SER THR LYS GLY PRO SEQRES 11 A 227 SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER SEQRES 12 A 227 GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 13 A 227 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA SEQRES 14 A 227 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 15 A 227 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 16 A 227 PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN SEQRES 17 A 227 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG SEQRES 18 A 227 VAL GLU PRO LYS SER CYS SEQRES 1 B 213 ASP ILE GLN MET THR GLN SER PRO SER THR LEU SER ALA SEQRES 2 B 213 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 B 213 GLN SER ILE SER SER TRP LEU ALA TRP TYR GLN GLN LYS SEQRES 4 B 213 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR LYS ALA SER SEQRES 5 B 213 ASN LEU GLU SER GLY VAL PRO LEU ARG PHE SER GLY SER SEQRES 6 B 213 GLY SER GLY THR GLU PHE THR LEU THR ILE SER SER LEU SEQRES 7 B 213 GLN PRO ASP ASP PHE ALA THR TYR TYR CYS GLN GLN TYR SEQRES 8 B 213 ASN ASN TYR TRP THR PHE GLY GLN GLY THR LYS VAL GLU SEQRES 9 B 213 ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE PHE SEQRES 10 B 213 PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SER SEQRES 11 B 213 VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA SEQRES 12 B 213 LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER GLY SEQRES 13 B 213 ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS ASP SEQRES 14 B 213 SER THR TYR SER LEU SER SER THR LEU THR LEU SER LYS SEQRES 15 B 213 ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL SEQRES 16 B 213 THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER PHE SEQRES 17 B 213 ASN ARG GLY GLU CYS SEQRES 1 C 12 ASN ALA ASN PRO ASN ALA ASN PRO ASN ALA ASN PRO HET GOL A 301 6 HET GOL B 301 6 HET GOL B 302 6 HET PEG B 303 7 HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 PEG C4 H10 O3 FORMUL 8 HOH *269(H2 O) HELIX 1 AA1 THR A 28 TYR A 32 5 5 HELIX 2 AA2 ASN A 73 ARG A 75 5 3 HELIX 3 AA3 ARG A 83 THR A 87 5 5 HELIX 4 AA4 SER A 156 ALA A 158 5 3 HELIX 5 AA5 SER A 187 GLN A 192 1 6 HELIX 6 AA6 LYS A 201 ASN A 204 5 4 HELIX 7 AA7 GLN B 79 PHE B 83 5 5 HELIX 8 AA8 SER B 121 LYS B 126 1 6 HELIX 9 AA9 LYS B 183 GLU B 187 1 5 SHEET 1 AA1 4 GLN A 3 SER A 7 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O ALA A 23 N VAL A 5 SHEET 3 AA1 4 THR A 77 MET A 82 -1 O MET A 82 N LEU A 18 SHEET 4 AA1 4 PHE A 67 ASP A 72 -1 N SER A 70 O TYR A 79 SHEET 1 AA2 6 GLY A 10 VAL A 12 0 SHEET 2 AA2 6 THR A 107 VAL A 111 1 O THR A 110 N VAL A 12 SHEET 3 AA2 6 ALA A 88 VAL A 95 -1 N ALA A 88 O VAL A 109 SHEET 4 AA2 6 MET A 34 GLN A 39 -1 N VAL A 37 O TYR A 91 SHEET 5 AA2 6 LEU A 45 ILE A 51 -1 O GLU A 46 N ARG A 38 SHEET 6 AA2 6 LYS A 57 TYR A 59 -1 O TYR A 58 N ILE A 50 SHEET 1 AA3 4 GLY A 10 VAL A 12 0 SHEET 2 AA3 4 THR A 107 VAL A 111 1 O THR A 110 N VAL A 12 SHEET 3 AA3 4 ALA A 88 VAL A 95 -1 N ALA A 88 O VAL A 109 SHEET 4 AA3 4 TYR A 100G TRP A 103 -1 O HIS A 102 N LYS A 94 SHEET 1 AA4 4 SER A 120 LEU A 124 0 SHEET 2 AA4 4 THR A 135 TYR A 145 -1 O LEU A 141 N PHE A 122 SHEET 3 AA4 4 TYR A 176 PRO A 185 -1 O LEU A 178 N VAL A 142 SHEET 4 AA4 4 VAL A 163 THR A 165 -1 N HIS A 164 O VAL A 181 SHEET 1 AA5 4 SER A 120 LEU A 124 0 SHEET 2 AA5 4 THR A 135 TYR A 145 -1 O LEU A 141 N PHE A 122 SHEET 3 AA5 4 TYR A 176 PRO A 185 -1 O LEU A 178 N VAL A 142 SHEET 4 AA5 4 VAL A 169 LEU A 170 -1 N VAL A 169 O SER A 177 SHEET 1 AA6 3 THR A 151 TRP A 154 0 SHEET 2 AA6 3 ILE A 195 HIS A 200 -1 O ASN A 197 N SER A 153 SHEET 3 AA6 3 THR A 205 ARG A 210 -1 O VAL A 207 N VAL A 198 SHEET 1 AA7 4 MET B 4 SER B 7 0 SHEET 2 AA7 4 VAL B 19 ALA B 25 -1 O THR B 22 N SER B 7 SHEET 3 AA7 4 GLU B 70 ILE B 75 -1 O LEU B 73 N ILE B 21 SHEET 4 AA7 4 PHE B 62 SER B 67 -1 N SER B 63 O THR B 74 SHEET 1 AA8 6 THR B 10 ALA B 13 0 SHEET 2 AA8 6 THR B 102 ILE B 106 1 O GLU B 105 N LEU B 11 SHEET 3 AA8 6 ALA B 84 GLN B 90 -1 N ALA B 84 O VAL B 104 SHEET 4 AA8 6 LEU B 33 GLN B 38 -1 N GLN B 38 O THR B 85 SHEET 5 AA8 6 LYS B 45 TYR B 49 -1 O LEU B 47 N TRP B 35 SHEET 6 AA8 6 ASN B 53 LEU B 54 -1 O ASN B 53 N TYR B 49 SHEET 1 AA9 4 THR B 10 ALA B 13 0 SHEET 2 AA9 4 THR B 102 ILE B 106 1 O GLU B 105 N LEU B 11 SHEET 3 AA9 4 ALA B 84 GLN B 90 -1 N ALA B 84 O VAL B 104 SHEET 4 AA9 4 THR B 97 PHE B 98 -1 O THR B 97 N GLN B 90 SHEET 1 AB1 4 SER B 114 PHE B 118 0 SHEET 2 AB1 4 THR B 129 PHE B 139 -1 O LEU B 135 N PHE B 116 SHEET 3 AB1 4 TYR B 173 SER B 182 -1 O LEU B 179 N VAL B 132 SHEET 4 AB1 4 SER B 159 VAL B 163 -1 N GLN B 160 O THR B 178 SHEET 1 AB2 4 ALA B 153 LEU B 154 0 SHEET 2 AB2 4 LYS B 145 VAL B 150 -1 N VAL B 150 O ALA B 153 SHEET 3 AB2 4 VAL B 191 THR B 197 -1 O GLU B 195 N GLN B 147 SHEET 4 AB2 4 VAL B 205 ASN B 210 -1 O VAL B 205 N VAL B 196 SSBOND 1 CYS A 22 CYS A 92 1555 1555 2.06 SSBOND 2 CYS A 140 CYS A 196 1555 1555 2.04 SSBOND 3 CYS B 23 CYS B 88 1555 1555 2.17 SSBOND 4 CYS B 134 CYS B 194 1555 1555 2.04 CISPEP 1 PHE A 146 PRO A 147 0 -5.26 CISPEP 2 GLU A 148 PRO A 149 0 0.72 CISPEP 3 GLU A 148 PRO A 149 0 1.84 CISPEP 4 SER B 7 PRO B 8 0 -5.84 CISPEP 5 TYR B 140 PRO B 141 0 0.70 SITE 1 AC1 5 GLY A 8 GLY A 9 GLY A 10 VAL A 11 SITE 2 AC1 5 HOH A 499 SITE 1 AC2 4 ARG B 18 VAL B 19 THR B 20 HOH B 483 SITE 1 AC3 5 PRO B 80 PHE B 83 ILE B 106 HOH B 403 SITE 2 AC3 5 HOH B 409 SITE 1 AC4 4 SER B 30 SER B 67 GLY B 68 HOH B 461 CRYST1 83.113 83.113 157.166 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012032 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012032 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006363 0.00000