data_6D1T # _entry.id 6D1T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6D1T pdb_00006d1t 10.2210/pdb6d1t/pdb WWPDB D_1000233720 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6D1T _pdbx_database_status.recvd_initial_deposition_date 2018-04-12 _pdbx_database_status.SG_entry Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Liu, K.' 1 ? 'Xu, C.' 2 ? 'Tempel, W.' 3 ? 'Arrowsmith, C.H.' 4 ? 'Bountra, C.' 5 ? 'Edwards, A.M.' 6 ? 'Min, J.' 7 ? 'Structural Genomics Consortium (SGC)' 8 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'to be published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Complex of MBD1-MBD and methylated DNA' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, K.' 1 ? primary 'Xu, C.' 2 ? primary 'Tempel, W.' 3 ? primary 'Arrowsmith, C.H.' 4 ? primary 'Bountra, C.' 5 ? primary 'Edwards, A.M.' 6 ? primary 'Min, J.' 7 ? primary 'Structural Genomics Consortium' 8 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6D1T _cell.details ? _cell.formula_units_Z ? _cell.length_a 28.574 _cell.length_a_esd ? _cell.length_b 74.193 _cell.length_b_esd ? _cell.length_c 138.872 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D1T _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Methyl-CpG-binding domain protein 1' 8870.105 1 ? ? 'residues 1-77' ? 2 polymer syn ;DNA (5'-D(*GP*CP*CP*AP*AP*(5CM)P*GP*TP*TP*GP*GP*C)-3') ; 3677.419 2 ? ? ? ? 3 non-polymer syn 'UNKNOWN ATOM OR ION' ? 12 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CXXC-type zinc finger protein 3,Methyl-CpG-binding protein MBD1,Protein containing methyl-CpG-binding domain 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GSMAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQGILCYPAPKAH GSMAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQGILCYPAPKAH A ? 2 polydeoxyribonucleotide no yes '(DG)(DC)(DC)(DA)(DA)(5CM)(DG)(DT)(DT)(DG)(DG)(DC)' GCCAACGTTGGC B,C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 MET n 1 4 ALA n 1 5 GLU n 1 6 ASP n 1 7 TRP n 1 8 LEU n 1 9 ASP n 1 10 CYS n 1 11 PRO n 1 12 ALA n 1 13 LEU n 1 14 GLY n 1 15 PRO n 1 16 GLY n 1 17 TRP n 1 18 LYS n 1 19 ARG n 1 20 ARG n 1 21 GLU n 1 22 VAL n 1 23 PHE n 1 24 ARG n 1 25 LYS n 1 26 SER n 1 27 GLY n 1 28 ALA n 1 29 THR n 1 30 CYS n 1 31 GLY n 1 32 ARG n 1 33 SER n 1 34 ASP n 1 35 THR n 1 36 TYR n 1 37 TYR n 1 38 GLN n 1 39 SER n 1 40 PRO n 1 41 THR n 1 42 GLY n 1 43 ASP n 1 44 ARG n 1 45 ILE n 1 46 ARG n 1 47 SER n 1 48 LYS n 1 49 VAL n 1 50 GLU n 1 51 LEU n 1 52 THR n 1 53 ARG n 1 54 TYR n 1 55 LEU n 1 56 GLY n 1 57 PRO n 1 58 ALA n 1 59 CYS n 1 60 ASP n 1 61 LEU n 1 62 THR n 1 63 LEU n 1 64 PHE n 1 65 ASP n 1 66 PHE n 1 67 LYS n 1 68 GLN n 1 69 GLY n 1 70 ILE n 1 71 LEU n 1 72 CYS n 1 73 TYR n 1 74 PRO n 1 75 ALA n 1 76 PRO n 1 77 LYS n 1 78 ALA n 1 79 HIS n 2 1 DG n 2 2 DC n 2 3 DC n 2 4 DA n 2 5 DA n 2 6 5CM n 2 7 DG n 2 8 DT n 2 9 DT n 2 10 DG n 2 11 DG n 2 12 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 79 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'MBD1, CXXC3, PCM1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-V2R-pRARE2' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28GST-LIC _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP MBD1_HUMAN Q9UIS9 ? 1 MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQGILCYPAPKAH 1 2 PDB 6D1T 6D1T ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6D1T A 3 ? 79 ? Q9UIS9 1 ? 77 ? 1 77 2 2 6D1T B 1 ? 12 ? 6D1T 1 ? 12 ? 1 12 3 2 6D1T C 1 ? 12 ? 6D1T 1 ? 12 ? 1 12 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6D1T GLY A 1 ? UNP Q9UIS9 ? ? 'expression tag' -1 1 1 6D1T SER A 2 ? UNP Q9UIS9 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNX non-polymer . 'UNKNOWN ATOM OR ION' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6D1T _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.5 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.5 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '30% PEG-550-MME, 0.1 M magnesium chloride, 0.1 M HEPES' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2012-12-14 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97911 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97911 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6D1T _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.250 _reflns.d_resolution_low 46.290 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7412 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.900 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.900 _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 20.300 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects 0 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.061 _reflns.pdbx_Rpim_I_all 0.023 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 51311 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 2.250 2.320 ? ? 4878 ? ? 674 674 100.000 ? ? ? ? 1.083 ? ? ? ? ? ? ? ? 7.200 ? ? ? 1.700 1.167 0.430 ? 1 1 0.641 ? 9.000 46.290 ? ? 762 ? ? 143 ? 96.900 ? ? ? ? 0.020 ? ? ? ? ? ? ? ? 5.300 ? ? ? 52.500 0.022 0.009 ? 2 1 0.999 ? # _refine.aniso_B[1][1] 0.5000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] -0.7700 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 0.2600 _refine.B_iso_max 103.310 _refine.B_iso_mean 51.0710 _refine.B_iso_min 22.130 _refine.correlation_coeff_Fo_to_Fc 0.9460 _refine.correlation_coeff_Fo_to_Fc_free 0.9420 _refine.details ;coot was used for interactive model building. Model geometry was assessed with phenix.molprobity. Difference density near Gly54 and Pro55 suggests that the link may alternately be a cis or trans peptide. ; _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6D1T _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.2500 _refine.ls_d_res_low 37.1000 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 6633 _refine.ls_number_reflns_R_free 748 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.8100 _refine.ls_percent_reflns_R_free 10.1000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2382 _refine.ls_R_factor_R_free 0.2693 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2349 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'earlier version of PDB entry 6cc8' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.3550 _refine.pdbx_overall_ESU_R_Free 0.2490 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 20.8370 _refine.overall_SU_ML 0.2290 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.2500 _refine_hist.d_res_low 37.1000 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1027 _refine_hist.pdbx_number_residues_total 93 _refine_hist.pdbx_B_iso_mean_ligand 35.84 _refine_hist.pdbx_number_atoms_protein 527 _refine_hist.pdbx_number_atoms_nucleic_acid 488 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.013 0.013 1099 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.018 745 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.533 1.518 1588 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.991 2.189 1753 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 6.121 5.000 69 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 17.132 14.348 23 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 16.784 15.000 75 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 26.124 15.000 7 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.075 0.200 141 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.009 0.021 935 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 237 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 1.416 3.594 277 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 1.414 3.597 278 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 2.294 5.389 347 ? r_mcangle_it ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.2510 _refine_ls_shell.d_res_low 2.3090 _refine_ls_shell.number_reflns_all 533 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 62 _refine_ls_shell.number_reflns_R_work 471 _refine_ls_shell.percent_reflns_obs 100.0000 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3120 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.3630 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6D1T _struct.title 'Complex of MBD1-MBD and methylated DNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6D1T _struct_keywords.text 'mbd, dna-methylation, Structural Genomics, Structural Genomics Consortium, SGC, DNA BINDING PROTEIN-DNA complex' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id SER _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 47 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLY _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 56 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id SER _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 45 _struct_conf.end_auth_comp_id GLY _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 54 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 59 SG ? ? ? 1_555 A CYS 59 SG ? ? A CYS 57 A CYS 57 3_455 ? ? ? ? ? ? ? 2.046 ? ? covale1 covale both ? B DA 5 "O3'" ? ? ? 1_555 B 5CM 6 P ? ? B DA 5 B 5CM 6 1_555 ? ? ? ? ? ? ? 1.621 ? ? covale2 covale both ? B 5CM 6 "O3'" ? ? ? 1_555 B DG 7 P ? ? B 5CM 6 B DG 7 1_555 ? ? ? ? ? ? ? 1.644 ? ? covale3 covale both ? C DA 5 "O3'" ? ? ? 1_555 C 5CM 6 P ? ? C DA 5 C 5CM 6 1_555 ? ? ? ? ? ? ? 1.529 ? ? covale4 covale both ? C 5CM 6 "O3'" ? ? ? 1_555 C DG 7 P ? ? C 5CM 6 C DG 7 1_555 ? ? ? ? ? ? ? 1.604 ? ? hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DC 12 N3 ? ? B DG 1 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DC 12 O2 ? ? B DG 1 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DC 12 N4 ? ? B DG 1 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 11 N1 ? ? B DC 2 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 11 O6 ? ? B DC 2 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 11 N2 ? ? B DC 2 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 10 N1 ? ? B DC 3 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 10 O6 ? ? B DC 3 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 10 N2 ? ? B DC 3 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DA 4 N1 ? ? ? 1_555 C DT 9 N3 ? ? B DA 4 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DA 4 N6 ? ? ? 1_555 C DT 9 O4 ? ? B DA 4 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DA 5 N1 ? ? ? 1_555 C DT 8 N3 ? ? B DA 5 C DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DA 5 N6 ? ? ? 1_555 C DT 8 O4 ? ? B DA 5 C DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B 5CM 6 N3 ? ? ? 1_555 C DG 7 N1 ? ? B 5CM 6 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B 5CM 6 N4 ? ? ? 1_555 C DG 7 O6 ? ? B 5CM 6 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B 5CM 6 O2 ? ? ? 1_555 C DG 7 N2 ? ? B 5CM 6 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DG 7 N1 ? ? ? 1_555 C 5CM 6 N3 ? ? B DG 7 C 5CM 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 7 N2 ? ? ? 1_555 C 5CM 6 O2 ? ? B DG 7 C 5CM 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 7 O6 ? ? ? 1_555 C 5CM 6 N4 ? ? B DG 7 C 5CM 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DT 8 N3 ? ? ? 1_555 C DA 5 N1 ? ? B DT 8 C DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DT 8 O4 ? ? ? 1_555 C DA 5 N6 ? ? B DT 8 C DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 4 N1 ? ? B DT 9 C DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 4 N6 ? ? B DT 9 C DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C DC 3 N3 ? ? B DG 10 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 10 N2 ? ? ? 1_555 C DC 3 O2 ? ? B DG 10 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 10 O6 ? ? ? 1_555 C DC 3 N4 ? ? B DG 10 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 2 N3 ? ? B DG 11 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 2 O2 ? ? B DG 11 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 2 N4 ? ? B DG 11 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DC 12 N3 ? ? ? 1_555 C DG 1 N1 ? ? B DC 12 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DC 12 N4 ? ? ? 1_555 C DG 1 O6 ? ? B DC 12 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DC 12 O2 ? ? ? 1_555 C DG 1 N2 ? ? B DC 12 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? hydrog ? ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 8 ? ASP A 9 ? LEU A 6 ASP A 7 AA1 2 LYS A 18 ? PHE A 23 ? LYS A 16 PHE A 21 AA1 3 SER A 33 ? GLN A 38 ? SER A 31 GLN A 36 AA1 4 ARG A 44 ? ILE A 45 ? ARG A 42 ILE A 43 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LEU A 8 ? N LEU A 6 O ARG A 19 ? O ARG A 17 AA1 2 3 N ARG A 20 ? N ARG A 18 O TYR A 36 ? O TYR A 34 AA1 3 4 N TYR A 37 ? N TYR A 35 O ILE A 45 ? O ILE A 43 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software C DA 5 ? 9 'binding site for Di-nucleotide DA C 5 and 5CM C 6' AC2 Software C 5CM 6 ? 8 'binding site for Di-nucleotide 5CM C 6 and DG C 7' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 ARG A 46 ? ARG A 44 . ? 1_555 ? 2 AC1 9 SER A 47 ? SER A 45 . ? 1_555 ? 3 AC1 9 LYS A 48 ? LYS A 46 . ? 1_555 ? 4 AC1 9 VAL A 49 ? VAL A 47 . ? 1_555 ? 5 AC1 9 DG B 7 ? DG B 7 . ? 1_555 ? 6 AC1 9 DT B 8 ? DT B 8 . ? 1_555 ? 7 AC1 9 DT B 9 ? DT B 9 . ? 1_555 ? 8 AC1 9 DA C 4 ? DA C 4 . ? 1_555 ? 9 AC1 9 DG C 7 ? DG C 7 . ? 1_555 ? 10 AC2 8 ARG A 46 ? ARG A 44 . ? 1_555 ? 11 AC2 8 SER A 47 ? SER A 45 . ? 1_555 ? 12 AC2 8 VAL A 49 ? VAL A 47 . ? 1_555 ? 13 AC2 8 DA B 5 ? DA B 5 . ? 1_555 ? 14 AC2 8 5CM B 6 ? 5CM B 6 . ? 1_555 ? 15 AC2 8 DG B 7 ? DG B 7 . ? 1_555 ? 16 AC2 8 DA C 5 ? DA C 5 . ? 1_555 ? 17 AC2 8 DT C 8 ? DT C 8 . ? 1_555 ? # _atom_sites.entry_id 6D1T _atom_sites.fract_transf_matrix[1][1] 0.034997 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013478 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007201 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S X # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 SER 2 0 ? ? ? A . n A 1 3 MET 3 1 ? ? ? A . n A 1 4 ALA 4 2 2 ALA ALA A . n A 1 5 GLU 5 3 3 GLU GLU A . n A 1 6 ASP 6 4 4 ASP ASP A . n A 1 7 TRP 7 5 5 TRP TRP A . n A 1 8 LEU 8 6 6 LEU LEU A . n A 1 9 ASP 9 7 7 ASP ASP A . n A 1 10 CYS 10 8 8 CYS CYS A . n A 1 11 PRO 11 9 9 PRO PRO A . n A 1 12 ALA 12 10 10 ALA ALA A . n A 1 13 LEU 13 11 11 LEU LEU A . n A 1 14 GLY 14 12 12 GLY GLY A . n A 1 15 PRO 15 13 13 PRO PRO A . n A 1 16 GLY 16 14 14 GLY GLY A . n A 1 17 TRP 17 15 15 TRP TRP A . n A 1 18 LYS 18 16 16 LYS LYS A . n A 1 19 ARG 19 17 17 ARG ARG A . n A 1 20 ARG 20 18 18 ARG ARG A . n A 1 21 GLU 21 19 19 GLU GLU A . n A 1 22 VAL 22 20 20 VAL VAL A . n A 1 23 PHE 23 21 21 PHE PHE A . n A 1 24 ARG 24 22 22 ARG ARG A . n A 1 25 LYS 25 23 23 LYS LYS A . n A 1 26 SER 26 24 24 SER SER A . n A 1 27 GLY 27 25 25 GLY GLY A . n A 1 28 ALA 28 26 26 ALA ALA A . n A 1 29 THR 29 27 27 THR THR A . n A 1 30 CYS 30 28 28 CYS CYS A . n A 1 31 GLY 31 29 29 GLY GLY A . n A 1 32 ARG 32 30 30 ARG ARG A . n A 1 33 SER 33 31 31 SER SER A . n A 1 34 ASP 34 32 32 ASP ASP A . n A 1 35 THR 35 33 33 THR THR A . n A 1 36 TYR 36 34 34 TYR TYR A . n A 1 37 TYR 37 35 35 TYR TYR A . n A 1 38 GLN 38 36 36 GLN GLN A . n A 1 39 SER 39 37 37 SER SER A . n A 1 40 PRO 40 38 38 PRO PRO A . n A 1 41 THR 41 39 39 THR THR A . n A 1 42 GLY 42 40 40 GLY GLY A . n A 1 43 ASP 43 41 41 ASP ASP A . n A 1 44 ARG 44 42 42 ARG ARG A . n A 1 45 ILE 45 43 43 ILE ILE A . n A 1 46 ARG 46 44 44 ARG ARG A . n A 1 47 SER 47 45 45 SER SER A . n A 1 48 LYS 48 46 46 LYS LYS A . n A 1 49 VAL 49 47 47 VAL VAL A . n A 1 50 GLU 50 48 48 GLU GLU A . n A 1 51 LEU 51 49 49 LEU LEU A . n A 1 52 THR 52 50 50 THR THR A . n A 1 53 ARG 53 51 51 ARG ARG A . n A 1 54 TYR 54 52 52 TYR TYR A . n A 1 55 LEU 55 53 53 LEU LEU A . n A 1 56 GLY 56 54 54 GLY GLY A . n A 1 57 PRO 57 55 55 PRO PRO A . n A 1 58 ALA 58 56 56 ALA ALA A . n A 1 59 CYS 59 57 57 CYS CYS A . n A 1 60 ASP 60 58 58 ASP ASP A . n A 1 61 LEU 61 59 59 LEU LEU A . n A 1 62 THR 62 60 60 THR THR A . n A 1 63 LEU 63 61 61 LEU LEU A . n A 1 64 PHE 64 62 62 PHE PHE A . n A 1 65 ASP 65 63 63 ASP ASP A . n A 1 66 PHE 66 64 64 PHE PHE A . n A 1 67 LYS 67 65 65 LYS LYS A . n A 1 68 GLN 68 66 66 GLN GLN A . n A 1 69 GLY 69 67 67 GLY GLY A . n A 1 70 ILE 70 68 68 ILE ILE A . n A 1 71 LEU 71 69 69 LEU LEU A . n A 1 72 CYS 72 70 70 CYS CYS A . n A 1 73 TYR 73 71 ? ? ? A . n A 1 74 PRO 74 72 ? ? ? A . n A 1 75 ALA 75 73 ? ? ? A . n A 1 76 PRO 76 74 ? ? ? A . n A 1 77 LYS 77 75 ? ? ? A . n A 1 78 ALA 78 76 ? ? ? A . n A 1 79 HIS 79 77 ? ? ? A . n B 2 1 DG 1 1 1 DG DG B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DA 4 4 4 DA DA B . n B 2 5 DA 5 5 5 DA DA B . n B 2 6 5CM 6 6 6 5CM 5CM B . n B 2 7 DG 7 7 7 DG DG B . n B 2 8 DT 8 8 8 DT DT B . n B 2 9 DT 9 9 9 DT DT B . n B 2 10 DG 10 10 10 DG DG B . n B 2 11 DG 11 11 11 DG DG B . n B 2 12 DC 12 12 12 DC DC B . n C 2 1 DG 1 1 1 DG DG C . n C 2 2 DC 2 2 2 DC DC C . n C 2 3 DC 3 3 3 DC DC C . n C 2 4 DA 4 4 4 DA DA C . n C 2 5 DA 5 5 5 DA DA C . n C 2 6 5CM 6 6 6 5CM 5CM C . n C 2 7 DG 7 7 7 DG DG C . n C 2 8 DT 8 8 8 DT DT C . n C 2 9 DT 9 9 9 DT DT C . n C 2 10 DG 10 10 10 DG DG C . n C 2 11 DG 11 11 11 DG DG C . n C 2 12 DC 12 12 12 DC DC C . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 UNX 1 101 4 UNX UNX A . E 3 UNX 1 102 5 UNX UNX A . F 3 UNX 1 103 14 UNX UNX A . G 3 UNX 1 104 22 UNX UNX A . H 3 UNX 1 105 24 UNX UNX A . I 3 UNX 1 101 7 UNX UNX B . J 3 UNX 1 102 8 UNX UNX B . K 3 UNX 1 103 25 UNX UNX B . L 3 UNX 1 101 1 UNX UNX C . M 3 UNX 1 102 3 UNX UNX C . N 3 UNX 1 103 13 UNX UNX C . O 3 UNX 1 104 23 UNX UNX C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4060 ? 1 MORE -3 ? 1 'SSA (A^2)' 7470 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-05-09 2 'Structure model' 1 1 2023-10-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -5.5927 -10.5075 24.5611 0.0220 0.2347 0.0262 -0.0317 -0.0096 -0.0057 2.9517 3.1648 8.6906 1.3640 -1.6105 -2.2193 -0.0220 0.1502 -0.1283 -0.5089 0.2307 0.2051 0.0318 -0.1500 0.1379 'X-RAY DIFFRACTION' 2 ? refined -7.5438 -10.8580 9.2748 0.1861 0.0626 0.0137 -0.1065 -0.0334 0.0171 4.1474 8.8037 1.9058 1.8120 -0.6344 1.3102 0.0712 -0.0660 -0.0052 0.0342 -0.0748 0.1633 0.1059 0.0681 -0.0609 'X-RAY DIFFRACTION' 3 ? refined -6.2240 -11.4039 8.8767 0.1704 0.1017 0.0180 -0.1218 -0.0415 0.0304 3.2976 11.8766 0.4788 0.4653 -0.0253 1.1219 0.0089 -0.0569 0.0480 0.0321 -0.0826 0.1285 -0.4285 0.0091 -0.0243 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 2 A 70 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 1 B 12 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C 1 C 12 ? ? ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0222 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.5.32 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 C _pdbx_validate_rmsd_bond.auth_comp_id_1 DA _pdbx_validate_rmsd_bond.auth_seq_id_1 5 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 P _pdbx_validate_rmsd_bond.auth_asym_id_2 C _pdbx_validate_rmsd_bond.auth_comp_id_2 5CM _pdbx_validate_rmsd_bond.auth_seq_id_2 6 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.529 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.078 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag Y # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ALA _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 56 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -27.64 _pdbx_validate_torsion.psi -51.94 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 4 ? OD1 ? A ASP 6 OD1 2 1 Y 1 A ASP 4 ? OD2 ? A ASP 6 OD2 3 1 Y 1 A LYS 16 ? NZ ? A LYS 18 NZ 4 1 Y 1 A LYS 23 ? CE ? A LYS 25 CE 5 1 Y 1 A LYS 23 ? NZ ? A LYS 25 NZ 6 1 Y 1 A ARG 42 ? NE ? A ARG 44 NE 7 1 Y 1 A ARG 42 ? CZ ? A ARG 44 CZ 8 1 Y 1 A ARG 42 ? NH1 ? A ARG 44 NH1 9 1 Y 1 A ARG 42 ? NH2 ? A ARG 44 NH2 10 1 Y 1 A LEU 61 ? CG ? A LEU 63 CG 11 1 Y 1 A LEU 61 ? CD1 ? A LEU 63 CD1 12 1 Y 1 A LEU 61 ? CD2 ? A LEU 63 CD2 13 1 Y 1 A GLN 66 ? CG ? A GLN 68 CG 14 1 Y 1 A GLN 66 ? CD ? A GLN 68 CD 15 1 Y 1 A GLN 66 ? OE1 ? A GLN 68 OE1 16 1 Y 1 A GLN 66 ? NE2 ? A GLN 68 NE2 17 1 Y 1 A CYS 70 ? CA ? A CYS 72 CA 18 1 Y 1 A CYS 70 ? C ? A CYS 72 C 19 1 Y 1 A CYS 70 ? O ? A CYS 72 O 20 1 Y 1 A CYS 70 ? CB ? A CYS 72 CB 21 1 Y 1 A CYS 70 ? SG ? A CYS 72 SG # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -1 ? A GLY 1 2 1 Y 1 A SER 0 ? A SER 2 3 1 Y 1 A MET 1 ? A MET 3 4 1 Y 1 A TYR 71 ? A TYR 73 5 1 Y 1 A PRO 72 ? A PRO 74 6 1 Y 1 A ALA 73 ? A ALA 75 7 1 Y 1 A PRO 74 ? A PRO 76 8 1 Y 1 A LYS 75 ? A LYS 77 9 1 Y 1 A ALA 76 ? A ALA 78 10 1 Y 1 A HIS 77 ? A HIS 79 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASP N N N N 78 ASP CA C N S 79 ASP C C N N 80 ASP O O N N 81 ASP CB C N N 82 ASP CG C N N 83 ASP OD1 O N N 84 ASP OD2 O N N 85 ASP OXT O N N 86 ASP H H N N 87 ASP H2 H N N 88 ASP HA H N N 89 ASP HB2 H N N 90 ASP HB3 H N N 91 ASP HD2 H N N 92 ASP HXT H N N 93 CYS N N N N 94 CYS CA C N R 95 CYS C C N N 96 CYS O O N N 97 CYS CB C N N 98 CYS SG S N N 99 CYS OXT O N N 100 CYS H H N N 101 CYS H2 H N N 102 CYS HA H N N 103 CYS HB2 H N N 104 CYS HB3 H N N 105 CYS HG H N N 106 CYS HXT H N N 107 DA OP3 O N N 108 DA P P N N 109 DA OP1 O N N 110 DA OP2 O N N 111 DA "O5'" O N N 112 DA "C5'" C N N 113 DA "C4'" C N R 114 DA "O4'" O N N 115 DA "C3'" C N S 116 DA "O3'" O N N 117 DA "C2'" C N N 118 DA "C1'" C N R 119 DA N9 N Y N 120 DA C8 C Y N 121 DA N7 N Y N 122 DA C5 C Y N 123 DA C6 C Y N 124 DA N6 N N N 125 DA N1 N Y N 126 DA C2 C Y N 127 DA N3 N Y N 128 DA C4 C Y N 129 DA HOP3 H N N 130 DA HOP2 H N N 131 DA "H5'" H N N 132 DA "H5''" H N N 133 DA "H4'" H N N 134 DA "H3'" H N N 135 DA "HO3'" H N N 136 DA "H2'" H N N 137 DA "H2''" H N N 138 DA "H1'" H N N 139 DA H8 H N N 140 DA H61 H N N 141 DA H62 H N N 142 DA H2 H N N 143 DC OP3 O N N 144 DC P P N N 145 DC OP1 O N N 146 DC OP2 O N N 147 DC "O5'" O N N 148 DC "C5'" C N N 149 DC "C4'" C N R 150 DC "O4'" O N N 151 DC "C3'" C N S 152 DC "O3'" O N N 153 DC "C2'" C N N 154 DC "C1'" C N R 155 DC N1 N N N 156 DC C2 C N N 157 DC O2 O N N 158 DC N3 N N N 159 DC C4 C N N 160 DC N4 N N N 161 DC C5 C N N 162 DC C6 C N N 163 DC HOP3 H N N 164 DC HOP2 H N N 165 DC "H5'" H N N 166 DC "H5''" H N N 167 DC "H4'" H N N 168 DC "H3'" H N N 169 DC "HO3'" H N N 170 DC "H2'" H N N 171 DC "H2''" H N N 172 DC "H1'" H N N 173 DC H41 H N N 174 DC H42 H N N 175 DC H5 H N N 176 DC H6 H N N 177 DG OP3 O N N 178 DG P P N N 179 DG OP1 O N N 180 DG OP2 O N N 181 DG "O5'" O N N 182 DG "C5'" C N N 183 DG "C4'" C N R 184 DG "O4'" O N N 185 DG "C3'" C N S 186 DG "O3'" O N N 187 DG "C2'" C N N 188 DG "C1'" C N R 189 DG N9 N Y N 190 DG C8 C Y N 191 DG N7 N Y N 192 DG C5 C Y N 193 DG C6 C N N 194 DG O6 O N N 195 DG N1 N N N 196 DG C2 C N N 197 DG N2 N N N 198 DG N3 N N N 199 DG C4 C Y N 200 DG HOP3 H N N 201 DG HOP2 H N N 202 DG "H5'" H N N 203 DG "H5''" H N N 204 DG "H4'" H N N 205 DG "H3'" H N N 206 DG "HO3'" H N N 207 DG "H2'" H N N 208 DG "H2''" H N N 209 DG "H1'" H N N 210 DG H8 H N N 211 DG H1 H N N 212 DG H21 H N N 213 DG H22 H N N 214 DT OP3 O N N 215 DT P P N N 216 DT OP1 O N N 217 DT OP2 O N N 218 DT "O5'" O N N 219 DT "C5'" C N N 220 DT "C4'" C N R 221 DT "O4'" O N N 222 DT "C3'" C N S 223 DT "O3'" O N N 224 DT "C2'" C N N 225 DT "C1'" C N R 226 DT N1 N N N 227 DT C2 C N N 228 DT O2 O N N 229 DT N3 N N N 230 DT C4 C N N 231 DT O4 O N N 232 DT C5 C N N 233 DT C7 C N N 234 DT C6 C N N 235 DT HOP3 H N N 236 DT HOP2 H N N 237 DT "H5'" H N N 238 DT "H5''" H N N 239 DT "H4'" H N N 240 DT "H3'" H N N 241 DT "HO3'" H N N 242 DT "H2'" H N N 243 DT "H2''" H N N 244 DT "H1'" H N N 245 DT H3 H N N 246 DT H71 H N N 247 DT H72 H N N 248 DT H73 H N N 249 DT H6 H N N 250 GLN N N N N 251 GLN CA C N S 252 GLN C C N N 253 GLN O O N N 254 GLN CB C N N 255 GLN CG C N N 256 GLN CD C N N 257 GLN OE1 O N N 258 GLN NE2 N N N 259 GLN OXT O N N 260 GLN H H N N 261 GLN H2 H N N 262 GLN HA H N N 263 GLN HB2 H N N 264 GLN HB3 H N N 265 GLN HG2 H N N 266 GLN HG3 H N N 267 GLN HE21 H N N 268 GLN HE22 H N N 269 GLN HXT H N N 270 GLU N N N N 271 GLU CA C N S 272 GLU C C N N 273 GLU O O N N 274 GLU CB C N N 275 GLU CG C N N 276 GLU CD C N N 277 GLU OE1 O N N 278 GLU OE2 O N N 279 GLU OXT O N N 280 GLU H H N N 281 GLU H2 H N N 282 GLU HA H N N 283 GLU HB2 H N N 284 GLU HB3 H N N 285 GLU HG2 H N N 286 GLU HG3 H N N 287 GLU HE2 H N N 288 GLU HXT H N N 289 GLY N N N N 290 GLY CA C N N 291 GLY C C N N 292 GLY O O N N 293 GLY OXT O N N 294 GLY H H N N 295 GLY H2 H N N 296 GLY HA2 H N N 297 GLY HA3 H N N 298 GLY HXT H N N 299 HIS N N N N 300 HIS CA C N S 301 HIS C C N N 302 HIS O O N N 303 HIS CB C N N 304 HIS CG C Y N 305 HIS ND1 N Y N 306 HIS CD2 C Y N 307 HIS CE1 C Y N 308 HIS NE2 N Y N 309 HIS OXT O N N 310 HIS H H N N 311 HIS H2 H N N 312 HIS HA H N N 313 HIS HB2 H N N 314 HIS HB3 H N N 315 HIS HD1 H N N 316 HIS HD2 H N N 317 HIS HE1 H N N 318 HIS HE2 H N N 319 HIS HXT H N N 320 ILE N N N N 321 ILE CA C N S 322 ILE C C N N 323 ILE O O N N 324 ILE CB C N S 325 ILE CG1 C N N 326 ILE CG2 C N N 327 ILE CD1 C N N 328 ILE OXT O N N 329 ILE H H N N 330 ILE H2 H N N 331 ILE HA H N N 332 ILE HB H N N 333 ILE HG12 H N N 334 ILE HG13 H N N 335 ILE HG21 H N N 336 ILE HG22 H N N 337 ILE HG23 H N N 338 ILE HD11 H N N 339 ILE HD12 H N N 340 ILE HD13 H N N 341 ILE HXT H N N 342 LEU N N N N 343 LEU CA C N S 344 LEU C C N N 345 LEU O O N N 346 LEU CB C N N 347 LEU CG C N N 348 LEU CD1 C N N 349 LEU CD2 C N N 350 LEU OXT O N N 351 LEU H H N N 352 LEU H2 H N N 353 LEU HA H N N 354 LEU HB2 H N N 355 LEU HB3 H N N 356 LEU HG H N N 357 LEU HD11 H N N 358 LEU HD12 H N N 359 LEU HD13 H N N 360 LEU HD21 H N N 361 LEU HD22 H N N 362 LEU HD23 H N N 363 LEU HXT H N N 364 LYS N N N N 365 LYS CA C N S 366 LYS C C N N 367 LYS O O N N 368 LYS CB C N N 369 LYS CG C N N 370 LYS CD C N N 371 LYS CE C N N 372 LYS NZ N N N 373 LYS OXT O N N 374 LYS H H N N 375 LYS H2 H N N 376 LYS HA H N N 377 LYS HB2 H N N 378 LYS HB3 H N N 379 LYS HG2 H N N 380 LYS HG3 H N N 381 LYS HD2 H N N 382 LYS HD3 H N N 383 LYS HE2 H N N 384 LYS HE3 H N N 385 LYS HZ1 H N N 386 LYS HZ2 H N N 387 LYS HZ3 H N N 388 LYS HXT H N N 389 MET N N N N 390 MET CA C N S 391 MET C C N N 392 MET O O N N 393 MET CB C N N 394 MET CG C N N 395 MET SD S N N 396 MET CE C N N 397 MET OXT O N N 398 MET H H N N 399 MET H2 H N N 400 MET HA H N N 401 MET HB2 H N N 402 MET HB3 H N N 403 MET HG2 H N N 404 MET HG3 H N N 405 MET HE1 H N N 406 MET HE2 H N N 407 MET HE3 H N N 408 MET HXT H N N 409 PHE N N N N 410 PHE CA C N S 411 PHE C C N N 412 PHE O O N N 413 PHE CB C N N 414 PHE CG C Y N 415 PHE CD1 C Y N 416 PHE CD2 C Y N 417 PHE CE1 C Y N 418 PHE CE2 C Y N 419 PHE CZ C Y N 420 PHE OXT O N N 421 PHE H H N N 422 PHE H2 H N N 423 PHE HA H N N 424 PHE HB2 H N N 425 PHE HB3 H N N 426 PHE HD1 H N N 427 PHE HD2 H N N 428 PHE HE1 H N N 429 PHE HE2 H N N 430 PHE HZ H N N 431 PHE HXT H N N 432 PRO N N N N 433 PRO CA C N S 434 PRO C C N N 435 PRO O O N N 436 PRO CB C N N 437 PRO CG C N N 438 PRO CD C N N 439 PRO OXT O N N 440 PRO H H N N 441 PRO HA H N N 442 PRO HB2 H N N 443 PRO HB3 H N N 444 PRO HG2 H N N 445 PRO HG3 H N N 446 PRO HD2 H N N 447 PRO HD3 H N N 448 PRO HXT H N N 449 SER N N N N 450 SER CA C N S 451 SER C C N N 452 SER O O N N 453 SER CB C N N 454 SER OG O N N 455 SER OXT O N N 456 SER H H N N 457 SER H2 H N N 458 SER HA H N N 459 SER HB2 H N N 460 SER HB3 H N N 461 SER HG H N N 462 SER HXT H N N 463 THR N N N N 464 THR CA C N S 465 THR C C N N 466 THR O O N N 467 THR CB C N R 468 THR OG1 O N N 469 THR CG2 C N N 470 THR OXT O N N 471 THR H H N N 472 THR H2 H N N 473 THR HA H N N 474 THR HB H N N 475 THR HG1 H N N 476 THR HG21 H N N 477 THR HG22 H N N 478 THR HG23 H N N 479 THR HXT H N N 480 TRP N N N N 481 TRP CA C N S 482 TRP C C N N 483 TRP O O N N 484 TRP CB C N N 485 TRP CG C Y N 486 TRP CD1 C Y N 487 TRP CD2 C Y N 488 TRP NE1 N Y N 489 TRP CE2 C Y N 490 TRP CE3 C Y N 491 TRP CZ2 C Y N 492 TRP CZ3 C Y N 493 TRP CH2 C Y N 494 TRP OXT O N N 495 TRP H H N N 496 TRP H2 H N N 497 TRP HA H N N 498 TRP HB2 H N N 499 TRP HB3 H N N 500 TRP HD1 H N N 501 TRP HE1 H N N 502 TRP HE3 H N N 503 TRP HZ2 H N N 504 TRP HZ3 H N N 505 TRP HH2 H N N 506 TRP HXT H N N 507 TYR N N N N 508 TYR CA C N S 509 TYR C C N N 510 TYR O O N N 511 TYR CB C N N 512 TYR CG C Y N 513 TYR CD1 C Y N 514 TYR CD2 C Y N 515 TYR CE1 C Y N 516 TYR CE2 C Y N 517 TYR CZ C Y N 518 TYR OH O N N 519 TYR OXT O N N 520 TYR H H N N 521 TYR H2 H N N 522 TYR HA H N N 523 TYR HB2 H N N 524 TYR HB3 H N N 525 TYR HD1 H N N 526 TYR HD2 H N N 527 TYR HE1 H N N 528 TYR HE2 H N N 529 TYR HH H N N 530 TYR HXT H N N 531 VAL N N N N 532 VAL CA C N S 533 VAL C C N N 534 VAL O O N N 535 VAL CB C N N 536 VAL CG1 C N N 537 VAL CG2 C N N 538 VAL OXT O N N 539 VAL H H N N 540 VAL H2 H N N 541 VAL HA H N N 542 VAL HB H N N 543 VAL HG11 H N N 544 VAL HG12 H N N 545 VAL HG13 H N N 546 VAL HG21 H N N 547 VAL HG22 H N N 548 VAL HG23 H N N 549 VAL HXT H N N 550 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 ALA N CA sing N N 39 ALA N H sing N N 40 ALA N H2 sing N N 41 ALA CA C sing N N 42 ALA CA CB sing N N 43 ALA CA HA sing N N 44 ALA C O doub N N 45 ALA C OXT sing N N 46 ALA CB HB1 sing N N 47 ALA CB HB2 sing N N 48 ALA CB HB3 sing N N 49 ALA OXT HXT sing N N 50 ARG N CA sing N N 51 ARG N H sing N N 52 ARG N H2 sing N N 53 ARG CA C sing N N 54 ARG CA CB sing N N 55 ARG CA HA sing N N 56 ARG C O doub N N 57 ARG C OXT sing N N 58 ARG CB CG sing N N 59 ARG CB HB2 sing N N 60 ARG CB HB3 sing N N 61 ARG CG CD sing N N 62 ARG CG HG2 sing N N 63 ARG CG HG3 sing N N 64 ARG CD NE sing N N 65 ARG CD HD2 sing N N 66 ARG CD HD3 sing N N 67 ARG NE CZ sing N N 68 ARG NE HE sing N N 69 ARG CZ NH1 sing N N 70 ARG CZ NH2 doub N N 71 ARG NH1 HH11 sing N N 72 ARG NH1 HH12 sing N N 73 ARG NH2 HH21 sing N N 74 ARG NH2 HH22 sing N N 75 ARG OXT HXT sing N N 76 ASP N CA sing N N 77 ASP N H sing N N 78 ASP N H2 sing N N 79 ASP CA C sing N N 80 ASP CA CB sing N N 81 ASP CA HA sing N N 82 ASP C O doub N N 83 ASP C OXT sing N N 84 ASP CB CG sing N N 85 ASP CB HB2 sing N N 86 ASP CB HB3 sing N N 87 ASP CG OD1 doub N N 88 ASP CG OD2 sing N N 89 ASP OD2 HD2 sing N N 90 ASP OXT HXT sing N N 91 CYS N CA sing N N 92 CYS N H sing N N 93 CYS N H2 sing N N 94 CYS CA C sing N N 95 CYS CA CB sing N N 96 CYS CA HA sing N N 97 CYS C O doub N N 98 CYS C OXT sing N N 99 CYS CB SG sing N N 100 CYS CB HB2 sing N N 101 CYS CB HB3 sing N N 102 CYS SG HG sing N N 103 CYS OXT HXT sing N N 104 DA OP3 P sing N N 105 DA OP3 HOP3 sing N N 106 DA P OP1 doub N N 107 DA P OP2 sing N N 108 DA P "O5'" sing N N 109 DA OP2 HOP2 sing N N 110 DA "O5'" "C5'" sing N N 111 DA "C5'" "C4'" sing N N 112 DA "C5'" "H5'" sing N N 113 DA "C5'" "H5''" sing N N 114 DA "C4'" "O4'" sing N N 115 DA "C4'" "C3'" sing N N 116 DA "C4'" "H4'" sing N N 117 DA "O4'" "C1'" sing N N 118 DA "C3'" "O3'" sing N N 119 DA "C3'" "C2'" sing N N 120 DA "C3'" "H3'" sing N N 121 DA "O3'" "HO3'" sing N N 122 DA "C2'" "C1'" sing N N 123 DA "C2'" "H2'" sing N N 124 DA "C2'" "H2''" sing N N 125 DA "C1'" N9 sing N N 126 DA "C1'" "H1'" sing N N 127 DA N9 C8 sing Y N 128 DA N9 C4 sing Y N 129 DA C8 N7 doub Y N 130 DA C8 H8 sing N N 131 DA N7 C5 sing Y N 132 DA C5 C6 sing Y N 133 DA C5 C4 doub Y N 134 DA C6 N6 sing N N 135 DA C6 N1 doub Y N 136 DA N6 H61 sing N N 137 DA N6 H62 sing N N 138 DA N1 C2 sing Y N 139 DA C2 N3 doub Y N 140 DA C2 H2 sing N N 141 DA N3 C4 sing Y N 142 DC OP3 P sing N N 143 DC OP3 HOP3 sing N N 144 DC P OP1 doub N N 145 DC P OP2 sing N N 146 DC P "O5'" sing N N 147 DC OP2 HOP2 sing N N 148 DC "O5'" "C5'" sing N N 149 DC "C5'" "C4'" sing N N 150 DC "C5'" "H5'" sing N N 151 DC "C5'" "H5''" sing N N 152 DC "C4'" "O4'" sing N N 153 DC "C4'" "C3'" sing N N 154 DC "C4'" "H4'" sing N N 155 DC "O4'" "C1'" sing N N 156 DC "C3'" "O3'" sing N N 157 DC "C3'" "C2'" sing N N 158 DC "C3'" "H3'" sing N N 159 DC "O3'" "HO3'" sing N N 160 DC "C2'" "C1'" sing N N 161 DC "C2'" "H2'" sing N N 162 DC "C2'" "H2''" sing N N 163 DC "C1'" N1 sing N N 164 DC "C1'" "H1'" sing N N 165 DC N1 C2 sing N N 166 DC N1 C6 sing N N 167 DC C2 O2 doub N N 168 DC C2 N3 sing N N 169 DC N3 C4 doub N N 170 DC C4 N4 sing N N 171 DC C4 C5 sing N N 172 DC N4 H41 sing N N 173 DC N4 H42 sing N N 174 DC C5 C6 doub N N 175 DC C5 H5 sing N N 176 DC C6 H6 sing N N 177 DG OP3 P sing N N 178 DG OP3 HOP3 sing N N 179 DG P OP1 doub N N 180 DG P OP2 sing N N 181 DG P "O5'" sing N N 182 DG OP2 HOP2 sing N N 183 DG "O5'" "C5'" sing N N 184 DG "C5'" "C4'" sing N N 185 DG "C5'" "H5'" sing N N 186 DG "C5'" "H5''" sing N N 187 DG "C4'" "O4'" sing N N 188 DG "C4'" "C3'" sing N N 189 DG "C4'" "H4'" sing N N 190 DG "O4'" "C1'" sing N N 191 DG "C3'" "O3'" sing N N 192 DG "C3'" "C2'" sing N N 193 DG "C3'" "H3'" sing N N 194 DG "O3'" "HO3'" sing N N 195 DG "C2'" "C1'" sing N N 196 DG "C2'" "H2'" sing N N 197 DG "C2'" "H2''" sing N N 198 DG "C1'" N9 sing N N 199 DG "C1'" "H1'" sing N N 200 DG N9 C8 sing Y N 201 DG N9 C4 sing Y N 202 DG C8 N7 doub Y N 203 DG C8 H8 sing N N 204 DG N7 C5 sing Y N 205 DG C5 C6 sing N N 206 DG C5 C4 doub Y N 207 DG C6 O6 doub N N 208 DG C6 N1 sing N N 209 DG N1 C2 sing N N 210 DG N1 H1 sing N N 211 DG C2 N2 sing N N 212 DG C2 N3 doub N N 213 DG N2 H21 sing N N 214 DG N2 H22 sing N N 215 DG N3 C4 sing N N 216 DT OP3 P sing N N 217 DT OP3 HOP3 sing N N 218 DT P OP1 doub N N 219 DT P OP2 sing N N 220 DT P "O5'" sing N N 221 DT OP2 HOP2 sing N N 222 DT "O5'" "C5'" sing N N 223 DT "C5'" "C4'" sing N N 224 DT "C5'" "H5'" sing N N 225 DT "C5'" "H5''" sing N N 226 DT "C4'" "O4'" sing N N 227 DT "C4'" "C3'" sing N N 228 DT "C4'" "H4'" sing N N 229 DT "O4'" "C1'" sing N N 230 DT "C3'" "O3'" sing N N 231 DT "C3'" "C2'" sing N N 232 DT "C3'" "H3'" sing N N 233 DT "O3'" "HO3'" sing N N 234 DT "C2'" "C1'" sing N N 235 DT "C2'" "H2'" sing N N 236 DT "C2'" "H2''" sing N N 237 DT "C1'" N1 sing N N 238 DT "C1'" "H1'" sing N N 239 DT N1 C2 sing N N 240 DT N1 C6 sing N N 241 DT C2 O2 doub N N 242 DT C2 N3 sing N N 243 DT N3 C4 sing N N 244 DT N3 H3 sing N N 245 DT C4 O4 doub N N 246 DT C4 C5 sing N N 247 DT C5 C7 sing N N 248 DT C5 C6 doub N N 249 DT C7 H71 sing N N 250 DT C7 H72 sing N N 251 DT C7 H73 sing N N 252 DT C6 H6 sing N N 253 GLN N CA sing N N 254 GLN N H sing N N 255 GLN N H2 sing N N 256 GLN CA C sing N N 257 GLN CA CB sing N N 258 GLN CA HA sing N N 259 GLN C O doub N N 260 GLN C OXT sing N N 261 GLN CB CG sing N N 262 GLN CB HB2 sing N N 263 GLN CB HB3 sing N N 264 GLN CG CD sing N N 265 GLN CG HG2 sing N N 266 GLN CG HG3 sing N N 267 GLN CD OE1 doub N N 268 GLN CD NE2 sing N N 269 GLN NE2 HE21 sing N N 270 GLN NE2 HE22 sing N N 271 GLN OXT HXT sing N N 272 GLU N CA sing N N 273 GLU N H sing N N 274 GLU N H2 sing N N 275 GLU CA C sing N N 276 GLU CA CB sing N N 277 GLU CA HA sing N N 278 GLU C O doub N N 279 GLU C OXT sing N N 280 GLU CB CG sing N N 281 GLU CB HB2 sing N N 282 GLU CB HB3 sing N N 283 GLU CG CD sing N N 284 GLU CG HG2 sing N N 285 GLU CG HG3 sing N N 286 GLU CD OE1 doub N N 287 GLU CD OE2 sing N N 288 GLU OE2 HE2 sing N N 289 GLU OXT HXT sing N N 290 GLY N CA sing N N 291 GLY N H sing N N 292 GLY N H2 sing N N 293 GLY CA C sing N N 294 GLY CA HA2 sing N N 295 GLY CA HA3 sing N N 296 GLY C O doub N N 297 GLY C OXT sing N N 298 GLY OXT HXT sing N N 299 HIS N CA sing N N 300 HIS N H sing N N 301 HIS N H2 sing N N 302 HIS CA C sing N N 303 HIS CA CB sing N N 304 HIS CA HA sing N N 305 HIS C O doub N N 306 HIS C OXT sing N N 307 HIS CB CG sing N N 308 HIS CB HB2 sing N N 309 HIS CB HB3 sing N N 310 HIS CG ND1 sing Y N 311 HIS CG CD2 doub Y N 312 HIS ND1 CE1 doub Y N 313 HIS ND1 HD1 sing N N 314 HIS CD2 NE2 sing Y N 315 HIS CD2 HD2 sing N N 316 HIS CE1 NE2 sing Y N 317 HIS CE1 HE1 sing N N 318 HIS NE2 HE2 sing N N 319 HIS OXT HXT sing N N 320 ILE N CA sing N N 321 ILE N H sing N N 322 ILE N H2 sing N N 323 ILE CA C sing N N 324 ILE CA CB sing N N 325 ILE CA HA sing N N 326 ILE C O doub N N 327 ILE C OXT sing N N 328 ILE CB CG1 sing N N 329 ILE CB CG2 sing N N 330 ILE CB HB sing N N 331 ILE CG1 CD1 sing N N 332 ILE CG1 HG12 sing N N 333 ILE CG1 HG13 sing N N 334 ILE CG2 HG21 sing N N 335 ILE CG2 HG22 sing N N 336 ILE CG2 HG23 sing N N 337 ILE CD1 HD11 sing N N 338 ILE CD1 HD12 sing N N 339 ILE CD1 HD13 sing N N 340 ILE OXT HXT sing N N 341 LEU N CA sing N N 342 LEU N H sing N N 343 LEU N H2 sing N N 344 LEU CA C sing N N 345 LEU CA CB sing N N 346 LEU CA HA sing N N 347 LEU C O doub N N 348 LEU C OXT sing N N 349 LEU CB CG sing N N 350 LEU CB HB2 sing N N 351 LEU CB HB3 sing N N 352 LEU CG CD1 sing N N 353 LEU CG CD2 sing N N 354 LEU CG HG sing N N 355 LEU CD1 HD11 sing N N 356 LEU CD1 HD12 sing N N 357 LEU CD1 HD13 sing N N 358 LEU CD2 HD21 sing N N 359 LEU CD2 HD22 sing N N 360 LEU CD2 HD23 sing N N 361 LEU OXT HXT sing N N 362 LYS N CA sing N N 363 LYS N H sing N N 364 LYS N H2 sing N N 365 LYS CA C sing N N 366 LYS CA CB sing N N 367 LYS CA HA sing N N 368 LYS C O doub N N 369 LYS C OXT sing N N 370 LYS CB CG sing N N 371 LYS CB HB2 sing N N 372 LYS CB HB3 sing N N 373 LYS CG CD sing N N 374 LYS CG HG2 sing N N 375 LYS CG HG3 sing N N 376 LYS CD CE sing N N 377 LYS CD HD2 sing N N 378 LYS CD HD3 sing N N 379 LYS CE NZ sing N N 380 LYS CE HE2 sing N N 381 LYS CE HE3 sing N N 382 LYS NZ HZ1 sing N N 383 LYS NZ HZ2 sing N N 384 LYS NZ HZ3 sing N N 385 LYS OXT HXT sing N N 386 MET N CA sing N N 387 MET N H sing N N 388 MET N H2 sing N N 389 MET CA C sing N N 390 MET CA CB sing N N 391 MET CA HA sing N N 392 MET C O doub N N 393 MET C OXT sing N N 394 MET CB CG sing N N 395 MET CB HB2 sing N N 396 MET CB HB3 sing N N 397 MET CG SD sing N N 398 MET CG HG2 sing N N 399 MET CG HG3 sing N N 400 MET SD CE sing N N 401 MET CE HE1 sing N N 402 MET CE HE2 sing N N 403 MET CE HE3 sing N N 404 MET OXT HXT sing N N 405 PHE N CA sing N N 406 PHE N H sing N N 407 PHE N H2 sing N N 408 PHE CA C sing N N 409 PHE CA CB sing N N 410 PHE CA HA sing N N 411 PHE C O doub N N 412 PHE C OXT sing N N 413 PHE CB CG sing N N 414 PHE CB HB2 sing N N 415 PHE CB HB3 sing N N 416 PHE CG CD1 doub Y N 417 PHE CG CD2 sing Y N 418 PHE CD1 CE1 sing Y N 419 PHE CD1 HD1 sing N N 420 PHE CD2 CE2 doub Y N 421 PHE CD2 HD2 sing N N 422 PHE CE1 CZ doub Y N 423 PHE CE1 HE1 sing N N 424 PHE CE2 CZ sing Y N 425 PHE CE2 HE2 sing N N 426 PHE CZ HZ sing N N 427 PHE OXT HXT sing N N 428 PRO N CA sing N N 429 PRO N CD sing N N 430 PRO N H sing N N 431 PRO CA C sing N N 432 PRO CA CB sing N N 433 PRO CA HA sing N N 434 PRO C O doub N N 435 PRO C OXT sing N N 436 PRO CB CG sing N N 437 PRO CB HB2 sing N N 438 PRO CB HB3 sing N N 439 PRO CG CD sing N N 440 PRO CG HG2 sing N N 441 PRO CG HG3 sing N N 442 PRO CD HD2 sing N N 443 PRO CD HD3 sing N N 444 PRO OXT HXT sing N N 445 SER N CA sing N N 446 SER N H sing N N 447 SER N H2 sing N N 448 SER CA C sing N N 449 SER CA CB sing N N 450 SER CA HA sing N N 451 SER C O doub N N 452 SER C OXT sing N N 453 SER CB OG sing N N 454 SER CB HB2 sing N N 455 SER CB HB3 sing N N 456 SER OG HG sing N N 457 SER OXT HXT sing N N 458 THR N CA sing N N 459 THR N H sing N N 460 THR N H2 sing N N 461 THR CA C sing N N 462 THR CA CB sing N N 463 THR CA HA sing N N 464 THR C O doub N N 465 THR C OXT sing N N 466 THR CB OG1 sing N N 467 THR CB CG2 sing N N 468 THR CB HB sing N N 469 THR OG1 HG1 sing N N 470 THR CG2 HG21 sing N N 471 THR CG2 HG22 sing N N 472 THR CG2 HG23 sing N N 473 THR OXT HXT sing N N 474 TRP N CA sing N N 475 TRP N H sing N N 476 TRP N H2 sing N N 477 TRP CA C sing N N 478 TRP CA CB sing N N 479 TRP CA HA sing N N 480 TRP C O doub N N 481 TRP C OXT sing N N 482 TRP CB CG sing N N 483 TRP CB HB2 sing N N 484 TRP CB HB3 sing N N 485 TRP CG CD1 doub Y N 486 TRP CG CD2 sing Y N 487 TRP CD1 NE1 sing Y N 488 TRP CD1 HD1 sing N N 489 TRP CD2 CE2 doub Y N 490 TRP CD2 CE3 sing Y N 491 TRP NE1 CE2 sing Y N 492 TRP NE1 HE1 sing N N 493 TRP CE2 CZ2 sing Y N 494 TRP CE3 CZ3 doub Y N 495 TRP CE3 HE3 sing N N 496 TRP CZ2 CH2 doub Y N 497 TRP CZ2 HZ2 sing N N 498 TRP CZ3 CH2 sing Y N 499 TRP CZ3 HZ3 sing N N 500 TRP CH2 HH2 sing N N 501 TRP OXT HXT sing N N 502 TYR N CA sing N N 503 TYR N H sing N N 504 TYR N H2 sing N N 505 TYR CA C sing N N 506 TYR CA CB sing N N 507 TYR CA HA sing N N 508 TYR C O doub N N 509 TYR C OXT sing N N 510 TYR CB CG sing N N 511 TYR CB HB2 sing N N 512 TYR CB HB3 sing N N 513 TYR CG CD1 doub Y N 514 TYR CG CD2 sing Y N 515 TYR CD1 CE1 sing Y N 516 TYR CD1 HD1 sing N N 517 TYR CD2 CE2 doub Y N 518 TYR CD2 HD2 sing N N 519 TYR CE1 CZ doub Y N 520 TYR CE1 HE1 sing N N 521 TYR CE2 CZ sing Y N 522 TYR CE2 HE2 sing N N 523 TYR CZ OH sing N N 524 TYR OH HH sing N N 525 TYR OXT HXT sing N N 526 VAL N CA sing N N 527 VAL N H sing N N 528 VAL N H2 sing N N 529 VAL CA C sing N N 530 VAL CA CB sing N N 531 VAL CA HA sing N N 532 VAL C O doub N N 533 VAL C OXT sing N N 534 VAL CB CG1 sing N N 535 VAL CB CG2 sing N N 536 VAL CB HB sing N N 537 VAL CG1 HG11 sing N N 538 VAL CG1 HG12 sing N N 539 VAL CG1 HG13 sing N N 540 VAL CG2 HG21 sing N N 541 VAL CG2 HG22 sing N N 542 VAL CG2 HG23 sing N N 543 VAL OXT HXT sing N N 544 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6D1T 'double helix' 6D1T 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 C DC 12 1_555 0.022 0.029 -0.200 1.219 -1.066 1.437 1 B_DG1:DC12_C B 1 ? C 12 ? 19 1 1 B DC 2 1_555 C DG 11 1_555 -0.222 0.003 0.358 -5.614 -10.479 -1.465 2 B_DC2:DG11_C B 2 ? C 11 ? 19 1 1 B DC 3 1_555 C DG 10 1_555 0.314 -0.194 -0.035 -2.141 -3.950 -1.504 3 B_DC3:DG10_C B 3 ? C 10 ? 19 1 1 B DA 4 1_555 C DT 9 1_555 -0.353 -0.051 -0.079 -3.277 -10.064 2.787 4 B_DA4:DT9_C B 4 ? C 9 ? 20 1 1 B DA 5 1_555 C DT 8 1_555 0.236 -0.172 -0.136 0.264 -9.398 0.793 5 B_DA5:DT8_C B 5 ? C 8 ? 20 1 1 B 5CM 6 1_555 C DG 7 1_555 0.129 -0.082 0.015 7.400 -2.992 -1.128 6 B_5CM6:DG7_C B 6 ? C 7 ? 19 1 1 B DG 7 1_555 C 5CM 6 1_555 -0.339 -0.138 -0.203 -14.512 -3.376 -1.693 7 B_DG7:5CM6_C B 7 ? C 6 ? 19 1 1 B DT 8 1_555 C DA 5 1_555 0.028 -0.162 0.244 -7.003 -12.072 -1.902 8 B_DT8:DA5_C B 8 ? C 5 ? 20 1 1 B DT 9 1_555 C DA 4 1_555 0.158 -0.062 0.003 -3.661 -14.495 3.696 9 B_DT9:DA4_C B 9 ? C 4 ? 20 1 1 B DG 10 1_555 C DC 3 1_555 -0.381 -0.035 0.005 -1.834 -3.391 3.694 10 B_DG10:DC3_C B 10 ? C 3 ? 19 1 1 B DG 11 1_555 C DC 2 1_555 -0.282 0.033 0.150 6.160 -5.140 -3.428 11 B_DG11:DC2_C B 11 ? C 2 ? 19 1 1 B DC 12 1_555 C DG 1 1_555 0.678 -0.044 -0.046 -3.831 -2.780 4.739 12 B_DC12:DG1_C B 12 ? C 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 1 1_555 C DC 12 1_555 B DC 2 1_555 C DG 11 1_555 -0.779 -0.588 3.404 -3.563 -2.327 34.975 -0.606 0.726 3.494 -3.855 5.901 35.225 1 BB_DG1DC2:DG11DC12_CC B 1 ? C 12 ? B 2 ? C 11 ? 1 B DC 2 1_555 C DG 11 1_555 B DC 3 1_555 C DG 10 1_555 0.248 0.277 3.265 3.797 4.226 33.962 -0.196 0.176 3.282 7.173 -6.445 34.421 2 BB_DC2DC3:DG10DG11_CC B 2 ? C 11 ? B 3 ? C 10 ? 1 B DC 3 1_555 C DG 10 1_555 B DA 4 1_555 C DT 9 1_555 -0.322 1.691 3.346 -1.646 1.196 40.846 2.285 0.274 3.402 1.713 2.356 40.895 3 BB_DC3DA4:DT9DG10_CC B 3 ? C 10 ? B 4 ? C 9 ? 1 B DA 4 1_555 C DT 9 1_555 B DA 5 1_555 C DT 8 1_555 0.185 0.104 3.245 -1.410 3.053 32.427 -0.342 -0.573 3.230 5.449 2.517 32.596 4 BB_DA4DA5:DT8DT9_CC B 4 ? C 9 ? B 5 ? C 8 ? 1 B DA 5 1_555 C DT 8 1_555 B 5CM 6 1_555 C DG 7 1_555 0.174 -0.319 3.149 -0.733 -0.871 31.695 -0.429 -0.449 3.152 -1.593 1.341 31.714 5 BB_DA55CM6:DG7DT8_CC B 5 ? C 8 ? B 6 ? C 7 ? 1 B 5CM 6 1_555 C DG 7 1_555 B DG 7 1_555 C 5CM 6 1_555 0.256 -0.617 3.723 2.810 3.374 43.139 -1.207 -0.037 3.676 4.574 -3.810 43.351 6 BB_5CM6DG7:5CM6DG7_CC B 6 ? C 7 ? B 7 ? C 6 ? 1 B DG 7 1_555 C 5CM 6 1_555 B DT 8 1_555 C DA 5 1_555 -1.010 -0.633 3.146 -2.246 -1.716 29.066 -0.891 1.525 3.244 -3.408 4.462 29.200 7 BB_DG7DT8:DA55CM6_CC B 7 ? C 6 ? B 8 ? C 5 ? 1 B DT 8 1_555 C DA 5 1_555 B DT 9 1_555 C DA 4 1_555 0.054 -0.218 3.167 1.990 0.493 34.071 -0.448 0.213 3.161 0.841 -3.393 34.130 8 BB_DT8DT9:DA4DA5_CC B 8 ? C 5 ? B 9 ? C 4 ? 1 B DT 9 1_555 C DA 4 1_555 B DG 10 1_555 C DC 3 1_555 0.429 1.234 3.251 1.396 4.833 39.034 1.249 -0.468 3.387 7.196 -2.078 39.344 9 BB_DT9DG10:DC3DA4_CC B 9 ? C 4 ? B 10 ? C 3 ? 1 B DG 10 1_555 C DC 3 1_555 B DG 11 1_555 C DC 2 1_555 -0.656 0.173 3.099 -2.531 2.922 31.648 -0.194 0.754 3.143 5.334 4.619 31.878 10 BB_DG10DG11:DC2DC3_CC B 10 ? C 3 ? B 11 ? C 2 ? 1 B DG 11 1_555 C DC 2 1_555 B DC 12 1_555 C DG 1 1_555 1.156 -0.363 3.568 3.067 -3.525 41.095 -0.096 -1.272 3.659 -5.003 -4.352 41.349 11 BB_DG11DC12:DG1DC2_CC B 11 ? C 2 ? B 12 ? C 1 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'UNKNOWN ATOM OR ION' _pdbx_entity_nonpoly.comp_id UNX # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6CC8 _pdbx_initial_refinement_model.details 'earlier version of PDB entry 6cc8' # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support homology _pdbx_struct_assembly_auth_evidence.details 'homologous to PDB entry 2KY8' #