HEADER TRANSCRIPTION 13-APR-18 6D2S TITLE MYCOBACTERIUM TUBERCULOSIS TRANSCRIPTIONAL REGULATOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REGULATOR PRPR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 155-440; COMPND 5 SYNONYM: PROPIONATE REGULATOR,PRPR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: PRPR, RV1129C, RVBD_1129C, P425_01178; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TRANSCRIPTIONAL REGULATOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR S.TANG,J.SACCHETTINI REVDAT 3 04-OCT-23 6D2S 1 LINK REVDAT 2 30-OCT-19 6D2S 1 JRNL REVDAT 1 17-APR-19 6D2S 0 JRNL AUTH S.TANG,N.D.HICKS,Y.S.CHENG,A.SILVA,S.M.FORTUNE, JRNL AUTH 2 J.C.SACCHETTINI JRNL TITL STRUCTURAL AND FUNCTIONAL INSIGHT INTO THE MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS PROTEIN PRPR REVEALS A NOVEL TYPE OF JRNL TITL 3 TRANSCRIPTION FACTOR. JRNL REF NUCLEIC ACIDS RES. V. 47 9934 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31504787 JRNL DOI 10.1093/NAR/GKZ724 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13RC1_2954 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1343 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.0996 - 3.9168 1.00 2653 149 0.1852 0.2147 REMARK 3 2 3.9168 - 3.1097 1.00 2574 134 0.1681 0.1704 REMARK 3 3 3.1097 - 2.7169 1.00 2560 117 0.1797 0.2013 REMARK 3 4 2.7169 - 2.4685 1.00 2538 121 0.1725 0.2199 REMARK 3 5 2.4685 - 2.2917 1.00 2531 117 0.1662 0.1972 REMARK 3 6 2.2917 - 2.1566 1.00 2505 138 0.1663 0.2190 REMARK 3 7 2.1566 - 2.0486 1.00 2482 163 0.1686 0.2251 REMARK 3 8 2.0486 - 1.9594 1.00 2488 142 0.1827 0.2185 REMARK 3 9 1.9594 - 1.8840 1.00 2499 129 0.1860 0.2713 REMARK 3 10 1.8840 - 1.8190 0.99 2475 133 0.2004 0.2652 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 153 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.4846 -16.4805 -20.7024 REMARK 3 T TENSOR REMARK 3 T11: 0.1118 T22: 0.0831 REMARK 3 T33: 0.1000 T12: -0.0038 REMARK 3 T13: -0.0082 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.4073 L22: 1.4003 REMARK 3 L33: 0.9760 L12: 0.0386 REMARK 3 L13: -0.4960 L23: -0.7918 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: 0.0047 S13: 0.1066 REMARK 3 S21: -0.0414 S22: 0.0219 S23: -0.0456 REMARK 3 S31: 0.0114 S32: -0.0098 S33: -0.0042 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 334 THROUGH 436 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3158 -27.4552 -4.1999 REMARK 3 T TENSOR REMARK 3 T11: 0.1817 T22: 0.3843 REMARK 3 T33: 0.2249 T12: -0.0152 REMARK 3 T13: 0.0057 T23: 0.0588 REMARK 3 L TENSOR REMARK 3 L11: 1.8751 L22: 2.2200 REMARK 3 L33: 2.2845 L12: -0.7227 REMARK 3 L13: 0.5402 L23: -0.7587 REMARK 3 S TENSOR REMARK 3 S11: -0.0418 S12: -0.5462 S13: 0.2208 REMARK 3 S21: 0.1194 S22: -0.0707 S23: -0.2296 REMARK 3 S31: -0.3205 S32: 0.2789 S33: 0.1274 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6D2S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233906. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI (111) ROSENBAUM-ROCK DOUBLE REMARK 200 -CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26651 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.24100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6CZ6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CACL2, HEPES PH 7.5, PEG 3,350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.49950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.86200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.68250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.49950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.86200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.68250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.49950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.86200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.68250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.49950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 40.86200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 47.68250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 501 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 152 REMARK 465 HIS A 355 REMARK 465 PHE A 356 REMARK 465 SER A 357 REMARK 465 ARG A 358 REMARK 465 VAL A 359 REMARK 465 GLY A 360 REMARK 465 GLY A 361 REMARK 465 SER A 362 REMARK 465 ASP A 436 REMARK 465 PRO A 437 REMARK 465 SER A 438 REMARK 465 THR A 439 REMARK 465 GLU A 440 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 602 O HOH A 603 1.97 REMARK 500 NH2 ARG A 274 O HOH A 601 1.98 REMARK 500 O HOH A 606 O HOH A 690 2.03 REMARK 500 O HOH A 612 O HOH A 755 2.06 REMARK 500 OD2 ASP A 210 O HOH A 602 2.06 REMARK 500 OD2 ASP A 210 O HOH A 603 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 757 O HOH A 760 8444 2.08 REMARK 500 O HOH A 645 O HOH A 645 2455 2.16 REMARK 500 O HOH A 638 O HOH A 660 3455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 328 -1.67 76.29 REMARK 500 GLN A 329 53.85 -143.86 REMARK 500 ALA A 353 58.43 -149.68 REMARK 500 GLU A 376 16.89 59.60 REMARK 500 ASP A 401 -148.55 -154.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 160 OD1 REMARK 620 2 ASP A 160 OD2 52.1 REMARK 620 3 ASP A 160 OD1 0.0 52.1 REMARK 620 4 ASP A 160 OD2 52.1 0.0 52.1 REMARK 620 5 ASP A 164 OD1 83.3 115.4 83.3 115.4 REMARK 620 6 ASP A 164 OD2 94.0 82.4 94.0 82.4 53.6 REMARK 620 7 ASP A 164 OD1 83.3 115.4 83.3 115.4 0.0 53.6 REMARK 620 8 ASP A 164 OD2 94.0 82.4 94.0 82.4 53.6 0.0 53.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 506 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 166 OD1 REMARK 620 2 SER A 350 O 107.9 REMARK 620 3 HOH A 619 O 77.3 145.5 REMARK 620 4 HOH A 638 O 89.4 120.3 93.4 REMARK 620 5 HOH A 643 O 88.5 68.0 78.3 171.6 REMARK 620 6 HOH A 660 O 93.9 72.5 142.0 49.1 139.1 REMARK 620 7 HOH A 703 O 166.5 84.5 89.4 88.9 91.2 95.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 505 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 171 OD2 REMARK 620 2 HOH A 725 O 69.4 REMARK 620 3 HOH A 736 O 69.6 60.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 399 O REMARK 620 2 ASP A 401 OD2 75.6 REMARK 620 3 LEU A 403 O 152.8 87.6 REMARK 620 4 HOH A 608 O 79.5 60.6 73.7 REMARK 620 5 HOH A 618 O 98.3 61.1 91.8 120.2 REMARK 620 6 HOH A 630 O 90.5 149.2 93.6 90.2 149.3 REMARK 620 7 HOH A 641 O 123.3 133.2 83.7 153.6 73.3 77.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 507 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6CZ6 RELATED DB: PDB REMARK 900 SEMET REMARK 900 RELATED ID: 6CYY RELATED DB: PDB REMARK 900 WT NATIVE REMARK 900 RELATED ID: 6CYJ RELATED DB: PDB REMARK 900 MUTANT DBREF 6D2S A 155 440 UNP O06581 PRPR_MYCTU 155 440 SEQADV 6D2S SER A 152 UNP O06581 EXPRESSION TAG SEQADV 6D2S ASN A 153 UNP O06581 EXPRESSION TAG SEQADV 6D2S ALA A 154 UNP O06581 EXPRESSION TAG SEQRES 1 A 289 SER ASN ALA PHE GLU GLU VAL ARG ASP PHE PHE TYR ASP SEQRES 2 A 289 ARG ASN ASN TYR ILE HIS ASP LEU ASP MET ALA ALA GLU SEQRES 3 A 289 ARG MET PHE THR GLU SER GLY MET ARG THR GLY GLY LEU SEQRES 4 A 289 ASP ILE GLN LEU ALA GLU LEU MET ARG ASP ARG PHE GLY SEQRES 5 A 289 ILE SER VAL VAL ILE ASP ASP ASN LEU PRO ASP THR ALA SEQRES 6 A 289 LYS ARG ARG TYR HIS PRO ASP THR LYS VAL LEU ARG VAL SEQRES 7 A 289 ALA HIS TRP LEU MET PRO GLY GLN ARG ALA PHE GLN ILE SEQRES 8 A 289 ALA THR GLN LEU ALA LEU VAL GLY GLN SER ASP LEU ILE SEQRES 9 A 289 SER SER ILE VAL ALA THR ASP ASP GLN LEU SER THR GLU SEQRES 10 A 289 ALA ARG GLY VAL ALA ARG ILE GLY LEU ALA ASN TYR PHE SEQRES 11 A 289 ALA GLY ALA PHE LEU LEU PRO TYR ARG GLU PHE HIS ARG SEQRES 12 A 289 ALA ALA GLU GLN LEU ARG TYR ASP ILE ASP LEU LEU GLY SEQRES 13 A 289 ARG ARG PHE GLY VAL GLY PHE GLU THR VAL CYS HIS ARG SEQRES 14 A 289 LEU SER THR LEU GLN ARG PRO ARG GLN ARG GLY ILE PRO SEQRES 15 A 289 PHE ILE PHE VAL ARG THR ASP LYS ALA GLY ASN ILE SER SEQRES 16 A 289 LYS ARG GLN SER ALA THR ALA PHE HIS PHE SER ARG VAL SEQRES 17 A 289 GLY GLY SER CYS PRO LEU TRP VAL VAL HIS ASP ALA PHE SEQRES 18 A 289 ALA GLN PRO GLU ARG ILE VAL ARG GLN VAL ALA GLN MET SEQRES 19 A 289 PRO ASP GLY ARG SER TYR PHE TRP VAL ALA LYS THR THR SEQRES 20 A 289 ALA ALA ASP GLY LEU GLY TYR LEU GLY PRO HIS LYS ASN SEQRES 21 A 289 PHE ALA VAL GLY LEU GLY CYS ASP LEU ALA HIS ALA HIS SEQRES 22 A 289 LYS LEU VAL TYR SER THR GLY VAL VAL LEU ASP ASP PRO SEQRES 23 A 289 SER THR GLU HET CA A 501 1 HET CA A 502 1 HET CL A 503 1 HET CL A 504 1 HET NA A 505 1 HET NA A 506 1 HET EDO A 507 10 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CA 2(CA 2+) FORMUL 4 CL 2(CL 1-) FORMUL 6 NA 2(NA 1+) FORMUL 8 EDO C2 H6 O2 FORMUL 9 HOH *177(H2 O) HELIX 1 AA1 ASN A 153 ARG A 165 1 13 HELIX 2 AA2 ILE A 169 SER A 183 1 15 HELIX 3 AA3 GLY A 189 GLY A 203 1 15 HELIX 4 AA4 LEU A 212 ALA A 216 5 5 HELIX 5 AA5 MET A 234 GLN A 251 1 18 HELIX 6 AA6 GLN A 251 THR A 261 1 11 HELIX 7 AA7 SER A 266 LEU A 287 1 22 HELIX 8 AA8 PRO A 288 LEU A 299 1 12 HELIX 9 AA9 ASP A 302 GLY A 311 1 10 HELIX 10 AB1 GLY A 313 SER A 322 1 10 HELIX 11 AB2 LEU A 365 ASP A 370 1 6 HELIX 12 AB3 ALA A 371 GLN A 374 5 4 HELIX 13 AB4 ALA A 421 THR A 430 5 10 SHEET 1 AA1 3 SER A 205 ASP A 209 0 SHEET 2 AA1 3 VAL A 226 ALA A 230 1 O VAL A 229 N ASP A 209 SHEET 3 AA1 3 ARG A 218 HIS A 221 -1 N HIS A 221 O VAL A 226 SHEET 1 AA2 5 ILE A 345 GLN A 349 0 SHEET 2 AA2 5 PHE A 334 ASP A 340 -1 N ARG A 338 O SER A 346 SHEET 3 AA2 5 PHE A 412 ASP A 419 -1 O ALA A 413 N THR A 339 SHEET 4 AA2 5 SER A 390 THR A 398 -1 N PHE A 392 O CYS A 418 SHEET 5 AA2 5 VAL A 379 GLN A 384 -1 N ALA A 383 O TYR A 391 LINK OD1 ASP A 160 CA CA A 501 1555 1555 2.44 LINK OD2 ASP A 160 CA CA A 501 1555 1555 2.51 LINK OD1 ASP A 160 CA CA A 501 1555 3455 2.45 LINK OD2 ASP A 160 CA CA A 501 1555 3455 2.51 LINK OD1 ASP A 164 CA CA A 501 1555 1555 2.41 LINK OD2 ASP A 164 CA CA A 501 1555 1555 2.48 LINK OD1 ASP A 164 CA CA A 501 1555 3455 2.41 LINK OD2 ASP A 164 CA CA A 501 1555 3455 2.48 LINK OD1 ASN A 166 NA NA A 506 1555 1555 2.63 LINK OD2 ASP A 171 NA NA A 505 1555 1555 2.31 LINK O SER A 350 NA NA A 506 1555 1555 2.15 LINK O ALA A 399 CA CA A 502 1555 1555 2.31 LINK OD2 ASP A 401 CA CA A 502 1555 1555 2.44 LINK O LEU A 403 CA CA A 502 1555 1555 2.27 LINK CA CA A 502 O HOH A 608 1555 1555 2.60 LINK CA CA A 502 O HOH A 618 1555 1555 2.99 LINK CA CA A 502 O HOH A 630 1555 1555 2.31 LINK CA CA A 502 O HOH A 641 1555 1555 2.44 LINK NA NA A 505 O HOH A 725 1555 1555 2.99 LINK NA NA A 505 O HOH A 736 1555 1555 3.14 LINK NA NA A 506 O HOH A 619 1555 3455 2.44 LINK NA NA A 506 O HOH A 638 1555 3455 2.76 LINK NA NA A 506 O HOH A 643 1555 1555 2.52 LINK NA NA A 506 O HOH A 660 1555 1555 2.39 LINK NA NA A 506 O HOH A 703 1555 1555 2.12 SITE 1 AC1 2 ASP A 160 ASP A 164 SITE 1 AC2 7 ALA A 399 ASP A 401 LEU A 403 HOH A 608 SITE 2 AC2 7 HOH A 618 HOH A 630 HOH A 641 SITE 1 AC3 4 GLN A 237 GLY A 313 THR A 316 GLY A 404 SITE 1 AC4 2 ARG A 218 ASN A 279 SITE 1 AC5 2 ASP A 171 HOH A 725 SITE 1 AC6 7 ASN A 166 SER A 350 HOH A 619 HOH A 638 SITE 2 AC6 7 HOH A 643 HOH A 660 HOH A 703 SITE 1 AC7 4 GLY A 188 GLY A 189 LEU A 190 HOH A 658 CRYST1 74.999 81.724 95.365 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013334 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012236 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010486 0.00000