HEADER LYASE 17-APR-18 6D3V TITLE CHROMOSOMAL TREHALOSE-6-PHOSPHATE PHOSPHATASE FROM P. AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TREHALOSE PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP. HMSC75E02; SOURCE 3 ORGANISM_TAXID: 1608908; SOURCE 4 GENE: HMPREF3289_15950; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HAD SUPERFAMILY/ROSSMANN FOLD, TREHALOSE-6-PHOSPHATE, KEYWDS 2 PHOSPHOHYDROLASE, HYDROLASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.HOFMANN,M.CROSS,S.-Y.PARK REVDAT 3 04-OCT-23 6D3V 1 LINK REVDAT 2 10-OCT-18 6D3V 1 JRNL REVDAT 1 09-MAY-18 6D3V 0 JRNL AUTH M.CROSS,S.BIBERACHER,S.Y.PARK,S.RAJAN,P.KORHONEN,R.B.GASSER, JRNL AUTH 2 J.S.KIM,M.J.COSTER,A.HOFMANN JRNL TITL TREHALOSE 6-PHOSPHATE PHOSPHATASES OF PSEUDOMONAS JRNL TITL 2 AERUGINOSA. JRNL REF FASEB J. V. 32 5470 2018 JRNL REFN ESSN 1530-6860 JRNL PMID 29688811 JRNL DOI 10.1096/FJ.201800500R REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 58938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2828 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.3249 - 4.8736 0.89 2597 133 0.1623 0.1840 REMARK 3 2 4.8736 - 3.8734 0.99 2816 152 0.1372 0.1431 REMARK 3 3 3.8734 - 3.3852 1.00 2830 144 0.1765 0.2524 REMARK 3 4 3.3852 - 3.0764 1.00 2876 129 0.1949 0.1968 REMARK 3 5 3.0764 - 2.8562 1.00 2819 128 0.2094 0.2274 REMARK 3 6 2.8562 - 2.6880 1.00 2779 195 0.2122 0.2266 REMARK 3 7 2.6880 - 2.5536 1.00 2832 128 0.2045 0.2345 REMARK 3 8 2.5536 - 2.4425 1.00 2834 132 0.2008 0.2251 REMARK 3 9 2.4425 - 2.3486 1.00 2812 130 0.2116 0.3259 REMARK 3 10 2.3486 - 2.2676 1.00 2859 112 0.2060 0.2524 REMARK 3 11 2.2676 - 2.1967 1.00 2850 119 0.1979 0.1852 REMARK 3 12 2.1967 - 2.1340 1.00 2850 91 0.1853 0.2312 REMARK 3 13 2.1340 - 2.0778 1.00 2821 128 0.1880 0.2643 REMARK 3 14 2.0778 - 2.0272 1.00 2815 168 0.1900 0.1978 REMARK 3 15 2.0272 - 1.9811 1.00 2751 183 0.2054 0.2547 REMARK 3 16 1.9811 - 1.9390 1.00 2796 144 0.2057 0.2473 REMARK 3 17 1.9390 - 1.9002 1.00 2819 135 0.2277 0.2720 REMARK 3 18 1.9002 - 1.8643 1.00 2784 148 0.2400 0.2612 REMARK 3 19 1.8643 - 1.8311 1.00 2775 163 0.2582 0.2736 REMARK 3 20 1.8311 - 1.8000 0.99 2795 166 0.2829 0.3039 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4026 REMARK 3 ANGLE : 0.843 5452 REMARK 3 CHIRALITY : 0.051 592 REMARK 3 PLANARITY : 0.006 710 REMARK 3 DIHEDRAL : 14.878 2376 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID -1:107) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4125 8.5308 -8.2560 REMARK 3 T TENSOR REMARK 3 T11: 0.2308 T22: 0.1805 REMARK 3 T33: 0.2186 T12: 0.0059 REMARK 3 T13: -0.0118 T23: -0.0385 REMARK 3 L TENSOR REMARK 3 L11: 0.8128 L22: 0.6561 REMARK 3 L33: 0.6989 L12: 0.1813 REMARK 3 L13: 0.2727 L23: -0.1261 REMARK 3 S TENSOR REMARK 3 S11: 0.0930 S12: 0.0443 S13: -0.0920 REMARK 3 S21: 0.0571 S22: -0.0528 S23: 0.0398 REMARK 3 S31: 0.0511 S32: -0.0516 S33: -0.0006 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 108:177) REMARK 3 ORIGIN FOR THE GROUP (A): -23.7198 4.1555 -29.4730 REMARK 3 T TENSOR REMARK 3 T11: 0.3142 T22: 0.8189 REMARK 3 T33: 0.4451 T12: 0.0797 REMARK 3 T13: -0.1255 T23: -0.3556 REMARK 3 L TENSOR REMARK 3 L11: 0.9521 L22: 1.2462 REMARK 3 L33: 0.9935 L12: -0.6445 REMARK 3 L13: 0.0782 L23: 0.1743 REMARK 3 S TENSOR REMARK 3 S11: 0.0459 S12: 1.0082 S13: -0.6259 REMARK 3 S21: -0.2691 S22: -0.0800 S23: 0.1485 REMARK 3 S31: 0.3446 S32: 0.0217 S33: 0.3795 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 178:251) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8625 17.6974 -18.1787 REMARK 3 T TENSOR REMARK 3 T11: 0.2363 T22: 0.2657 REMARK 3 T33: 0.2077 T12: 0.0400 REMARK 3 T13: -0.0060 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 1.0843 L22: 1.2608 REMARK 3 L33: 1.0305 L12: -0.0762 REMARK 3 L13: -0.0906 L23: 0.6424 REMARK 3 S TENSOR REMARK 3 S11: 0.0838 S12: 0.2694 S13: 0.0425 REMARK 3 S21: -0.0900 S22: -0.0800 S23: 0.0366 REMARK 3 S31: -0.0939 S32: -0.0297 S33: 0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID -1:110) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8991 28.4313 -8.5924 REMARK 3 T TENSOR REMARK 3 T11: 0.2153 T22: 0.1720 REMARK 3 T33: 0.2114 T12: 0.0045 REMARK 3 T13: 0.0185 T23: 0.0417 REMARK 3 L TENSOR REMARK 3 L11: 0.7882 L22: 0.6327 REMARK 3 L33: 0.7532 L12: 0.1461 REMARK 3 L13: -0.1948 L23: 0.1025 REMARK 3 S TENSOR REMARK 3 S11: 0.0947 S12: 0.0632 S13: 0.1039 REMARK 3 S21: 0.0324 S22: -0.0446 S23: -0.0297 REMARK 3 S31: -0.0515 S32: 0.0576 S33: -0.0011 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 111:174) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3273 34.1804 -29.6574 REMARK 3 T TENSOR REMARK 3 T11: 0.3208 T22: 0.7895 REMARK 3 T33: 0.4366 T12: 0.0508 REMARK 3 T13: 0.1091 T23: 0.4156 REMARK 3 L TENSOR REMARK 3 L11: 0.8028 L22: 1.2987 REMARK 3 L33: 0.9782 L12: -0.7401 REMARK 3 L13: 0.0502 L23: -0.1374 REMARK 3 S TENSOR REMARK 3 S11: 0.0781 S12: 0.9167 S13: 0.6447 REMARK 3 S21: -0.2205 S22: -0.0449 S23: -0.1546 REMARK 3 S31: -0.3618 S32: -0.0153 S33: 0.3969 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 175:251) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3966 19.6377 -18.7610 REMARK 3 T TENSOR REMARK 3 T11: 0.2386 T22: 0.2797 REMARK 3 T33: 0.2176 T12: 0.0378 REMARK 3 T13: 0.0174 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.1542 L22: 1.3221 REMARK 3 L33: 0.9892 L12: -0.0928 REMARK 3 L13: 0.1675 L23: -0.6418 REMARK 3 S TENSOR REMARK 3 S11: 0.0927 S12: 0.2988 S13: -0.0569 REMARK 3 S21: -0.1345 S22: -0.0716 S23: -0.0291 REMARK 3 S31: 0.1137 S32: 0.0629 S33: 0.0081 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID -1 THROUGH 110 OR REMARK 3 RESID 112 THROUGH 249)) REMARK 3 SELECTION : (CHAIN B AND (RESID -1 THROUGH 110 OR REMARK 3 RESID 112 THROUGH 249)) REMARK 3 ATOM PAIRS NUMBER : 1933 REMARK 3 RMSD : 0.012 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6D3V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233960. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97957 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59009 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 24.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.34800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6CJ0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2, 20% PEG 6000, 0.1 M MES, REMARK 280 PH 6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.41000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 250 REMARK 465 ILE A 251 REMARK 465 GLU A 252 REMARK 465 ILE B 250 REMARK 465 ILE B 251 REMARK 465 GLU B 252 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 471 O HOH B 504 2.12 REMARK 500 O HOH A 448 O HOH A 499 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 12 -76.97 -107.79 REMARK 500 ASN A 41 -2.29 -144.71 REMARK 500 LYS A 76 50.77 -102.40 REMARK 500 GLU A 143 106.64 -52.92 REMARK 500 HIS A 147 -61.83 -106.02 REMARK 500 LEU B 12 -78.05 -107.37 REMARK 500 ASN B 41 -2.00 -145.33 REMARK 500 LYS B 76 51.12 -102.56 REMARK 500 GLU B 143 106.88 -53.42 REMARK 500 HIS B 147 -62.29 -106.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 303 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 0 NE2 REMARK 620 2 HIS A 49 NE2 97.4 REMARK 620 3 HOH A 483 O 91.7 169.5 REMARK 620 4 HIS B 0 NE2 98.0 7.5 163.9 REMARK 620 5 HIS B 49 NE2 170.9 73.7 97.4 73.4 REMARK 620 6 HOH B 422 O 90.2 7.5 176.4 12.5 80.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 304 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 11 OD2 REMARK 620 2 ASP A 13 O 89.5 REMARK 620 3 ASP A 220 OD1 77.4 91.5 REMARK 620 4 ACY A 301 O 98.0 91.9 174.2 REMARK 620 5 HOH A 410 O 91.6 176.2 85.2 91.5 REMARK 620 6 HOH A 418 O 166.2 89.1 89.0 95.7 89.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 301 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 11 OD2 REMARK 620 2 ASP B 13 O 91.2 REMARK 620 3 ASP B 220 OD1 76.6 92.3 REMARK 620 4 ACY B 302 O 98.6 93.2 172.8 REMARK 620 5 HOH B 408 O 89.2 172.9 80.9 93.7 REMARK 620 6 HOH B 423 O 165.3 88.0 88.8 96.1 89.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6CJ0 RELATED DB: PDB DBREF1 6D3V A 1 252 UNP A0A1S1GKD7_9PSED DBREF2 6D3V A A0A1S1GKD7 1 252 DBREF1 6D3V B 1 252 UNP A0A1S1GKD7_9PSED DBREF2 6D3V B A0A1S1GKD7 1 252 SEQADV 6D3V GLY A -1 UNP A0A1S1GKD EXPRESSION TAG SEQADV 6D3V HIS A 0 UNP A0A1S1GKD EXPRESSION TAG SEQADV 6D3V GLY B -1 UNP A0A1S1GKD EXPRESSION TAG SEQADV 6D3V HIS B 0 UNP A0A1S1GKD EXPRESSION TAG SEQRES 1 A 254 GLY HIS MET GLY THR ASN ARG PRO LEU VAL PHE VAL ASP SEQRES 2 A 254 LEU ASP ASP THR LEU PHE GLN THR SER ARG LYS MET VAL SEQRES 3 A 254 GLU GLY THR PRO ARG THR THR ALA THR LEU ASP VAL HIS SEQRES 4 A 254 GLY GLN PRO ASN GLY TYR MET ASN PRO ILE GLN HIS SER SEQRES 5 A 254 PHE ILE SER TRP LEU LEU ALA SER ALA ASP VAL VAL PRO SEQRES 6 A 254 VAL THR ALA ARG ASP VAL GLU ALA TYR SER ARG VAL LYS SEQRES 7 A 254 LEU PRO PHE THR GLU GLY ALA ILE CYS SER HIS GLY GLY SEQRES 8 A 254 VAL MET LEU HIS SER ASP GLY SER LEU ASP GLN ASP TRP SEQRES 9 A 254 HIS GLY GLN MET ALA LYS SER LEU TRP ALA PHE GLN ASP SEQRES 10 A 254 ARG LEU PRO ALA LEU SER GLU ALA THR LEU ARG ILE GLY SEQRES 11 A 254 LYS ASP MET GLY TYR SER LEU ARG GLY TRP VAL VAL GLU SEQRES 12 A 254 GLU GLU GLY LEU ARG HIS TYR VAL VAL THR LYS GLN ASN SEQRES 13 A 254 GLU SER ASP ASP ALA VAL LEU SER LYS VAL LEU ALA GLU SEQRES 14 A 254 VAL GLN ALA ARG GLY MET LEU GLU GLY MET HIS ILE HIS SEQRES 15 A 254 ALA ASN GLY ASN ASN LEU ALA PHE LEU PRO LYS GLY LEU SEQRES 16 A 254 ALA LYS ARG LEU ALA VAL GLN GLU TRP LEU ARG ARG ASP SEQRES 17 A 254 ALA LYS ILE ASN GLY ASP ARG PRO VAL LEU GLY PHE GLY SEQRES 18 A 254 ASP SER ILE THR ASP LEU GLY PHE MET GLY LEU CYS HIS SEQRES 19 A 254 MET TRP ALA THR PRO ALA ARG SER GLN LEU ALA LYS ALA SEQRES 20 A 254 VAL GLU GLU MET ILE ILE GLU SEQRES 1 B 254 GLY HIS MET GLY THR ASN ARG PRO LEU VAL PHE VAL ASP SEQRES 2 B 254 LEU ASP ASP THR LEU PHE GLN THR SER ARG LYS MET VAL SEQRES 3 B 254 GLU GLY THR PRO ARG THR THR ALA THR LEU ASP VAL HIS SEQRES 4 B 254 GLY GLN PRO ASN GLY TYR MET ASN PRO ILE GLN HIS SER SEQRES 5 B 254 PHE ILE SER TRP LEU LEU ALA SER ALA ASP VAL VAL PRO SEQRES 6 B 254 VAL THR ALA ARG ASP VAL GLU ALA TYR SER ARG VAL LYS SEQRES 7 B 254 LEU PRO PHE THR GLU GLY ALA ILE CYS SER HIS GLY GLY SEQRES 8 B 254 VAL MET LEU HIS SER ASP GLY SER LEU ASP GLN ASP TRP SEQRES 9 B 254 HIS GLY GLN MET ALA LYS SER LEU TRP ALA PHE GLN ASP SEQRES 10 B 254 ARG LEU PRO ALA LEU SER GLU ALA THR LEU ARG ILE GLY SEQRES 11 B 254 LYS ASP MET GLY TYR SER LEU ARG GLY TRP VAL VAL GLU SEQRES 12 B 254 GLU GLU GLY LEU ARG HIS TYR VAL VAL THR LYS GLN ASN SEQRES 13 B 254 GLU SER ASP ASP ALA VAL LEU SER LYS VAL LEU ALA GLU SEQRES 14 B 254 VAL GLN ALA ARG GLY MET LEU GLU GLY MET HIS ILE HIS SEQRES 15 B 254 ALA ASN GLY ASN ASN LEU ALA PHE LEU PRO LYS GLY LEU SEQRES 16 B 254 ALA LYS ARG LEU ALA VAL GLN GLU TRP LEU ARG ARG ASP SEQRES 17 B 254 ALA LYS ILE ASN GLY ASP ARG PRO VAL LEU GLY PHE GLY SEQRES 18 B 254 ASP SER ILE THR ASP LEU GLY PHE MET GLY LEU CYS HIS SEQRES 19 B 254 MET TRP ALA THR PRO ALA ARG SER GLN LEU ALA LYS ALA SEQRES 20 B 254 VAL GLU GLU MET ILE ILE GLU HET ACY A 301 4 HET EDO A 302 4 HET NI A 303 1 HET NI A 304 1 HET NI B 301 1 HET ACY B 302 4 HET EDO B 303 4 HETNAM ACY ACETIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM NI NICKEL (II) ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ACY 2(C2 H4 O2) FORMUL 4 EDO 2(C2 H6 O2) FORMUL 5 NI 3(NI 2+) FORMUL 10 HOH *206(H2 O) HELIX 1 AA1 THR A 19 MET A 23 5 5 HELIX 2 AA2 ASN A 45 ALA A 59 1 15 HELIX 3 AA3 ASP A 68 ARG A 74 1 7 HELIX 4 AA4 SER A 86 GLY A 89 5 4 HELIX 5 AA5 ASP A 99 TRP A 111 1 13 HELIX 6 AA6 ALA A 112 GLN A 114 5 3 HELIX 7 AA7 ASP A 115 MET A 131 1 17 HELIX 8 AA8 ASP A 158 ARG A 171 1 14 HELIX 9 AA9 ALA A 194 GLY A 211 1 18 HELIX 10 AB1 SER A 221 THR A 223 5 3 HELIX 11 AB2 ASP A 224 GLY A 229 1 6 HELIX 12 AB3 SER A 240 MET A 249 1 10 HELIX 13 AB4 THR B 19 MET B 23 5 5 HELIX 14 AB5 ASN B 45 ALA B 59 1 15 HELIX 15 AB6 ASP B 68 ARG B 74 1 7 HELIX 16 AB7 SER B 86 GLY B 89 5 4 HELIX 17 AB8 ASP B 99 TRP B 111 1 13 HELIX 18 AB9 ALA B 112 GLN B 114 5 3 HELIX 19 AC1 ASP B 115 MET B 131 1 17 HELIX 20 AC2 ASP B 158 ARG B 171 1 14 HELIX 21 AC3 ALA B 194 GLY B 211 1 18 HELIX 22 AC4 SER B 221 THR B 223 5 3 HELIX 23 AC5 ASP B 224 GLY B 229 1 6 HELIX 24 AC6 SER B 240 MET B 249 1 10 SHEET 1 AA1 8 ASP A 60 PRO A 63 0 SHEET 2 AA1 8 LEU A 7 VAL A 10 1 N VAL A 8 O ASP A 60 SHEET 3 AA1 8 VAL A 215 PHE A 218 1 O LEU A 216 N PHE A 9 SHEET 4 AA1 8 MET A 233 PRO A 237 1 O ALA A 235 N GLY A 217 SHEET 5 AA1 8 MET B 233 PRO B 237 -1 O TRP B 234 N THR A 236 SHEET 6 AA1 8 VAL B 215 PHE B 218 1 N GLY B 217 O ALA B 235 SHEET 7 AA1 8 LEU B 7 VAL B 10 1 N PHE B 9 O PHE B 218 SHEET 8 AA1 8 ASP B 60 PRO B 63 1 O ASP B 60 N VAL B 8 SHEET 1 AA2 2 THR A 30 LEU A 34 0 SHEET 2 AA2 2 PRO A 40 MET A 44 -1 O GLY A 42 N ALA A 32 SHEET 1 AA3 2 ALA A 83 CYS A 85 0 SHEET 2 AA3 2 VAL A 90 LEU A 92 -1 O LEU A 92 N ALA A 83 SHEET 1 AA4 4 LEU A 135 GLU A 142 0 SHEET 2 AA4 4 LEU A 145 GLN A 153 -1 O LYS A 152 N ARG A 136 SHEET 3 AA4 4 LEU A 186 PRO A 190 -1 O PHE A 188 N VAL A 149 SHEET 4 AA4 4 MET A 177 ALA A 181 -1 N HIS A 178 O LEU A 189 SHEET 1 AA5 2 THR B 30 LEU B 34 0 SHEET 2 AA5 2 PRO B 40 MET B 44 -1 O GLY B 42 N ALA B 32 SHEET 1 AA6 2 ALA B 83 CYS B 85 0 SHEET 2 AA6 2 VAL B 90 LEU B 92 -1 O LEU B 92 N ALA B 83 SHEET 1 AA7 4 LEU B 135 GLU B 142 0 SHEET 2 AA7 4 LEU B 145 GLN B 153 -1 O LYS B 152 N ARG B 136 SHEET 3 AA7 4 LEU B 186 PRO B 190 -1 O PHE B 188 N VAL B 149 SHEET 4 AA7 4 MET B 177 ALA B 181 -1 N HIS B 178 O LEU B 189 LINK NE2 HIS A 0 NI NI A 303 1555 1555 2.24 LINK OD2 ASP A 11 NI NI A 304 1555 1555 2.07 LINK O ASP A 13 NI NI A 304 1555 1555 2.26 LINK NE2 HIS A 49 NI NI A 303 1555 2545 2.33 LINK OD1 ASP A 220 NI NI A 304 1555 1555 2.21 LINK O ACY A 301 NI NI A 304 1555 1555 2.43 LINK NI NI A 303 O HOH A 483 1555 1555 2.13 LINK NI NI A 303 NE2 HIS B 0 2545 1555 2.24 LINK NI NI A 303 NE2 HIS B 49 1555 1555 2.32 LINK NI NI A 303 O HOH B 422 1555 1555 2.10 LINK NI NI A 304 O HOH A 410 1555 1555 2.20 LINK NI NI A 304 O HOH A 418 1555 1555 2.31 LINK OD2 ASP B 11 NI NI B 301 1555 1555 2.04 LINK O ASP B 13 NI NI B 301 1555 1555 2.22 LINK OD1 ASP B 220 NI NI B 301 1555 1555 2.21 LINK NI NI B 301 O ACY B 302 1555 1555 2.34 LINK NI NI B 301 O HOH B 408 1555 1555 2.14 LINK NI NI B 301 O HOH B 423 1555 1555 2.24 SITE 1 AC1 10 ASP A 11 LEU A 12 ASP A 13 THR A 65 SITE 2 AC1 10 ALA A 66 LYS A 195 NI A 304 HOH A 402 SITE 3 AC1 10 HOH A 420 HOH A 462 SITE 1 AC2 4 LEU A 92 HIS A 93 TRP A 202 ARG A 205 SITE 1 AC3 4 HIS A 0 HOH A 483 HIS B 49 HOH B 422 SITE 1 AC4 6 ASP A 11 ASP A 13 ASP A 220 ACY A 301 SITE 2 AC4 6 HOH A 410 HOH A 418 SITE 1 AC5 6 ASP B 11 ASP B 13 ASP B 220 ACY B 302 SITE 2 AC5 6 HOH B 408 HOH B 423 SITE 1 AC6 9 ASP B 11 LEU B 12 ASP B 13 THR B 65 SITE 2 AC6 9 ALA B 66 LYS B 195 NI B 301 HOH B 402 SITE 3 AC6 9 HOH B 409 SITE 1 AC7 4 LEU B 92 HIS B 93 TRP B 202 ARG B 205 CRYST1 74.265 66.820 75.165 90.00 119.60 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013465 0.000000 0.007651 0.00000 SCALE2 0.000000 0.014966 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015302 0.00000