HEADER OXIDOREDUCTASE 17-APR-18 6D4B TITLE CRYSTAL STRUCTURE OF CANDIDA BOIDINII FORMATE DEHYDROGENASE V123A TITLE 2 MUTANT COMPLEXED WITH NAD+ AND AZIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORMATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FDH,NAD-DEPENDENT FORMATE DEHYDROGENASE; COMPND 5 EC: 1.17.1.9; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA BOIDINII; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 5477; SOURCE 5 GENE: FDH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS TERNARY COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.GUO,H.YE,L.GAKHAR,C.M.CHEATUM,A.KOHEN REVDAT 4 04-OCT-23 6D4B 1 REMARK REVDAT 3 01-JAN-20 6D4B 1 REMARK REVDAT 2 06-NOV-19 6D4B 1 JRNL REVDAT 1 24-APR-19 6D4B 0 JRNL AUTH P.L.PAGANO,Q.GUO,C.RANASINGHE,E.SCHROEDER,K.ROBBEN,F.HASE, JRNL AUTH 2 H.YE,K.WICKERSHAM,A.ASPURU-GUZIK,D.T.MAJOR,L.GAKHAR,A.KOHEN, JRNL AUTH 3 C.M.CHEATUM JRNL TITL OSCILLATORY ACTIVE-SITE MOTIONS CORRELATE WITH KINETIC JRNL TITL 2 ISOTOPE EFFECTS IN FORMATE DEHYDROGENASE JRNL REF ACS CATALYSIS 2019 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.9B03345 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 122618 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 11588 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.9582 - 4.5040 0.93 7210 418 0.1310 0.1394 REMARK 3 2 4.5040 - 3.5755 0.93 7249 371 0.1230 0.1310 REMARK 3 3 3.5755 - 3.1236 0.94 7260 440 0.1364 0.1706 REMARK 3 4 3.1236 - 2.8381 0.96 7458 398 0.1405 0.1624 REMARK 3 5 2.8381 - 2.6347 0.96 7509 413 0.1428 0.1703 REMARK 3 6 2.6347 - 2.4794 0.97 7621 407 0.1340 0.1598 REMARK 3 7 2.4794 - 2.3552 0.98 7604 351 0.1344 0.1812 REMARK 3 8 2.3552 - 2.2527 0.97 7629 371 0.1355 0.1698 REMARK 3 9 2.2527 - 2.1660 0.97 7611 383 0.1366 0.1666 REMARK 3 10 2.1660 - 2.0912 0.98 7547 434 0.1359 0.1609 REMARK 3 11 2.0912 - 2.0258 0.97 7559 388 0.1481 0.2050 REMARK 3 12 2.0258 - 1.9679 0.98 7641 394 0.1523 0.1820 REMARK 3 13 1.9679 - 1.9161 0.98 7587 429 0.1508 0.1917 REMARK 3 14 1.9161 - 1.8694 0.95 7475 398 0.1608 0.1773 REMARK 3 15 1.8694 - 1.8269 0.97 7556 405 0.1593 0.1772 REMARK 3 16 1.8269 - 1.7880 0.95 7377 408 0.1640 0.2161 REMARK 3 17 1.7880 - 1.7522 0.94 7259 385 0.1710 0.1988 REMARK 3 18 1.7522 - 1.7192 0.93 7319 384 0.1748 0.2050 REMARK 3 19 1.7192 - 1.6885 0.93 7294 339 0.1791 0.2238 REMARK 3 20 1.6885 - 1.6598 0.94 7272 417 0.1807 0.2094 REMARK 3 21 1.6598 - 1.6331 0.96 7468 390 0.1903 0.2441 REMARK 3 22 1.6331 - 1.6079 0.98 7685 336 0.1925 0.2158 REMARK 3 23 1.6079 - 1.5843 0.97 7608 394 0.1955 0.2274 REMARK 3 24 1.5843 - 1.5620 0.97 7604 359 0.2008 0.2080 REMARK 3 25 1.5620 - 1.5409 0.97 7546 411 0.1996 0.2077 REMARK 3 26 1.5409 - 1.5208 0.97 7623 396 0.2016 0.2423 REMARK 3 27 1.5208 - 1.5018 0.97 7461 370 0.2150 0.2260 REMARK 3 28 1.5018 - 1.4837 0.93 7414 347 0.2239 0.2753 REMARK 3 29 1.4837 - 1.4665 0.85 6593 325 0.2343 0.2586 REMARK 3 30 1.4665 - 1.4500 0.79 6253 327 0.2364 0.2612 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5924 REMARK 3 ANGLE : 1.042 8059 REMARK 3 CHIRALITY : 0.078 901 REMARK 3 PLANARITY : 0.007 1030 REMARK 3 DIHEDRAL : 16.322 2181 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6D4B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233976. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 122618 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 44.937 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5DN9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES. 25% PEG 3000, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 58.04900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 362 REMARK 465 LYS A 363 REMARK 465 LYS A 364 REMARK 465 ASP B 362 REMARK 465 LYS B 363 REMARK 465 LYS B 364 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 126 O HOH A 608 1.46 REMARK 500 HD1 HIS B 126 O HOH B 607 1.53 REMARK 500 HE2 HIS B 361 O HOH B 611 1.59 REMARK 500 OE2 GLU A 143 O HOH A 601 1.93 REMARK 500 O HOH B 660 O HOH B 802 1.99 REMARK 500 O HOH A 621 O HOH A 824 1.99 REMARK 500 OD1 ASN B 147 O HOH B 601 2.00 REMARK 500 O HOH A 607 O HOH A 727 2.01 REMARK 500 O HOH A 764 O HOH A 867 2.02 REMARK 500 O HOH A 981 O HOH A 1100 2.02 REMARK 500 O HOH B 663 O HOH B 1019 2.03 REMARK 500 O HOH B 852 O HOH B 907 2.03 REMARK 500 O HOH A 650 O HOH A 769 2.05 REMARK 500 O HOH A 1022 O HOH A 1091 2.05 REMARK 500 O HOH A 650 O HOH A 1155 2.06 REMARK 500 O HOH A 892 O HOH B 1035 2.07 REMARK 500 OE1 GLU B 332 O HOH B 602 2.07 REMARK 500 O HOH A 619 O HOH A 875 2.08 REMARK 500 O HOH A 773 O HOH B 635 2.08 REMARK 500 O HOH A 955 O HOH A 1014 2.08 REMARK 500 O HOH B 840 O HOH B 984 2.08 REMARK 500 O HOH B 964 O HOH B 1070 2.09 REMARK 500 O HOH A 686 O HOH A 1048 2.11 REMARK 500 O HOH B 655 O HOH B 1065 2.12 REMARK 500 O HOH A 673 O HOH A 755 2.12 REMARK 500 O HOH A 834 O HOH A 844 2.13 REMARK 500 OE1 GLU A 352 O HOH A 602 2.14 REMARK 500 O HOH A 618 O HOH A 884 2.14 REMARK 500 O HOH B 889 O HOH B 1033 2.14 REMARK 500 OH TYR B 160 O HOH B 603 2.15 REMARK 500 O HOH A 915 O HOH A 1067 2.16 REMARK 500 O HOH B 1000 O HOH B 1100 2.17 REMARK 500 O HOH B 963 O HOH B 1009 2.17 REMARK 500 O HOH A 874 O HOH A 1136 2.17 REMARK 500 O HOH B 613 O HOH B 987 2.18 REMARK 500 O HOH B 992 O HOH B 1109 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1093 O HOH B 828 1554 2.10 REMARK 500 O HOH A 968 O HOH A 1019 1455 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 119 24.13 -140.77 REMARK 500 TRP A 150 112.55 -160.34 REMARK 500 ALA A 257 -83.75 -87.36 REMARK 500 ALA A 304 -151.62 -134.72 REMARK 500 TYR A 312 -5.50 -142.64 REMARK 500 TYR A 358 41.83 -107.02 REMARK 500 ASN B 119 25.86 -141.58 REMARK 500 HIS B 148 30.05 70.18 REMARK 500 TRP B 150 110.16 -160.64 REMARK 500 ASN B 228 46.72 -142.03 REMARK 500 ALA B 257 -83.66 -85.88 REMARK 500 ALA B 304 -147.46 -134.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1183 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A1184 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1185 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A1186 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A1187 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A1188 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A1189 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A1190 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH A1191 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH B1151 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B1152 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B1153 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B1154 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B1155 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH B1156 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH B1157 DISTANCE = 7.00 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AZI A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AZI B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DN9 RELATED DB: PDB DBREF1 6D4B A 1 364 UNP A0A0A1EQY0_CANBO DBREF2 6D4B A A0A0A1EQY0 1 364 DBREF1 6D4B B 1 364 UNP A0A0A1EQY0_CANBO DBREF2 6D4B B A0A0A1EQY0 1 364 SEQADV 6D4B ALA A 123 UNP A0A0A1EQY VAL 123 ENGINEERED MUTATION SEQADV 6D4B ALA B 123 UNP A0A0A1EQY VAL 123 ENGINEERED MUTATION SEQRES 1 A 364 MET LYS ILE VAL LEU VAL LEU TYR ASP ALA GLY LYS HIS SEQRES 2 A 364 ALA ALA ASP GLU GLU LYS LEU TYR GLY CYS THR GLU ASN SEQRES 3 A 364 LYS LEU GLY ILE ALA ASN TRP LEU LYS ASP GLN GLY HIS SEQRES 4 A 364 GLU LEU ILE THR THR SER ASP LYS GLU GLY GLY ASN SER SEQRES 5 A 364 VAL LEU ASP GLN HIS ILE PRO ASP ALA ASP ILE ILE ILE SEQRES 6 A 364 THR THR PRO PHE HIS PRO ALA TYR ILE THR LYS GLU ARG SEQRES 7 A 364 ILE ASP LYS ALA LYS LYS LEU LYS LEU VAL VAL VAL ALA SEQRES 8 A 364 GLY VAL GLY SER ASP HIS ILE ASP LEU ASP TYR ILE ASN SEQRES 9 A 364 GLN THR GLY LYS LYS ILE SER VAL LEU GLU VAL THR GLY SEQRES 10 A 364 SER ASN VAL VAL SER ALA ALA GLU HIS VAL LEU MET THR SEQRES 11 A 364 MET LEU VAL LEU VAL ARG ASN PHE VAL PRO ALA HIS GLU SEQRES 12 A 364 GLN ILE ILE ASN HIS ASP TRP GLU VAL ALA ALA ILE ALA SEQRES 13 A 364 LYS ASP ALA TYR ASP ILE GLU GLY LYS THR ILE ALA THR SEQRES 14 A 364 ILE GLY ALA GLY ARG ILE GLY TYR ARG VAL LEU GLU ARG SEQRES 15 A 364 LEU VAL PRO PHE ASN PRO LYS GLU LEU LEU TYR TYR ASP SEQRES 16 A 364 TYR GLN ALA LEU PRO LYS ASP ALA GLU GLU LYS VAL GLY SEQRES 17 A 364 ALA ARG ARG VAL GLU ASN ILE GLU GLU LEU VAL ALA GLN SEQRES 18 A 364 ALA ASP ILE VAL THR ILE ASN ALA PRO LEU HIS ALA GLY SEQRES 19 A 364 THR LYS GLY LEU ILE ASN LYS GLU LEU LEU SER LYS PHE SEQRES 20 A 364 LYS LYS GLY ALA TRP LEU VAL ASN THR ALA ARG GLY ALA SEQRES 21 A 364 ILE CYS VAL ALA GLU ASP VAL ALA ALA ALA LEU GLU SER SEQRES 22 A 364 GLY GLN LEU ARG GLY TYR GLY GLY ASP VAL TRP PHE PRO SEQRES 23 A 364 GLN PRO ALA PRO LYS ASP HIS PRO TRP ARG ASP MET ARG SEQRES 24 A 364 ASN LYS TYR GLY ALA GLY ASN ALA MET THR PRO HIS TYR SEQRES 25 A 364 SER GLY THR THR LEU ASP ALA GLN THR ARG TYR ALA GLU SEQRES 26 A 364 GLY THR LYS ASN ILE LEU GLU SER PHE PHE THR GLY LYS SEQRES 27 A 364 PHE ASP TYR ARG PRO GLN ASP ILE ILE LEU LEU ASN GLY SEQRES 28 A 364 GLU TYR ILE THR LYS ALA TYR GLY LYS HIS ASP LYS LYS SEQRES 1 B 364 MET LYS ILE VAL LEU VAL LEU TYR ASP ALA GLY LYS HIS SEQRES 2 B 364 ALA ALA ASP GLU GLU LYS LEU TYR GLY CYS THR GLU ASN SEQRES 3 B 364 LYS LEU GLY ILE ALA ASN TRP LEU LYS ASP GLN GLY HIS SEQRES 4 B 364 GLU LEU ILE THR THR SER ASP LYS GLU GLY GLY ASN SER SEQRES 5 B 364 VAL LEU ASP GLN HIS ILE PRO ASP ALA ASP ILE ILE ILE SEQRES 6 B 364 THR THR PRO PHE HIS PRO ALA TYR ILE THR LYS GLU ARG SEQRES 7 B 364 ILE ASP LYS ALA LYS LYS LEU LYS LEU VAL VAL VAL ALA SEQRES 8 B 364 GLY VAL GLY SER ASP HIS ILE ASP LEU ASP TYR ILE ASN SEQRES 9 B 364 GLN THR GLY LYS LYS ILE SER VAL LEU GLU VAL THR GLY SEQRES 10 B 364 SER ASN VAL VAL SER ALA ALA GLU HIS VAL LEU MET THR SEQRES 11 B 364 MET LEU VAL LEU VAL ARG ASN PHE VAL PRO ALA HIS GLU SEQRES 12 B 364 GLN ILE ILE ASN HIS ASP TRP GLU VAL ALA ALA ILE ALA SEQRES 13 B 364 LYS ASP ALA TYR ASP ILE GLU GLY LYS THR ILE ALA THR SEQRES 14 B 364 ILE GLY ALA GLY ARG ILE GLY TYR ARG VAL LEU GLU ARG SEQRES 15 B 364 LEU VAL PRO PHE ASN PRO LYS GLU LEU LEU TYR TYR ASP SEQRES 16 B 364 TYR GLN ALA LEU PRO LYS ASP ALA GLU GLU LYS VAL GLY SEQRES 17 B 364 ALA ARG ARG VAL GLU ASN ILE GLU GLU LEU VAL ALA GLN SEQRES 18 B 364 ALA ASP ILE VAL THR ILE ASN ALA PRO LEU HIS ALA GLY SEQRES 19 B 364 THR LYS GLY LEU ILE ASN LYS GLU LEU LEU SER LYS PHE SEQRES 20 B 364 LYS LYS GLY ALA TRP LEU VAL ASN THR ALA ARG GLY ALA SEQRES 21 B 364 ILE CYS VAL ALA GLU ASP VAL ALA ALA ALA LEU GLU SER SEQRES 22 B 364 GLY GLN LEU ARG GLY TYR GLY GLY ASP VAL TRP PHE PRO SEQRES 23 B 364 GLN PRO ALA PRO LYS ASP HIS PRO TRP ARG ASP MET ARG SEQRES 24 B 364 ASN LYS TYR GLY ALA GLY ASN ALA MET THR PRO HIS TYR SEQRES 25 B 364 SER GLY THR THR LEU ASP ALA GLN THR ARG TYR ALA GLU SEQRES 26 B 364 GLY THR LYS ASN ILE LEU GLU SER PHE PHE THR GLY LYS SEQRES 27 B 364 PHE ASP TYR ARG PRO GLN ASP ILE ILE LEU LEU ASN GLY SEQRES 28 B 364 GLU TYR ILE THR LYS ALA TYR GLY LYS HIS ASP LYS LYS HET NAD A 501 70 HET AZI A 502 3 HET CL A 503 1 HET NAD B 501 70 HET AZI B 502 3 HET CL B 503 1 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM AZI AZIDE ION HETNAM CL CHLORIDE ION FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 AZI 2(N3 1-) FORMUL 5 CL 2(CL 1-) FORMUL 9 HOH *1148(H2 O) HELIX 1 AA1 ALA A 10 GLU A 17 5 8 HELIX 2 AA2 ASN A 26 GLY A 29 5 4 HELIX 3 AA3 ILE A 30 GLN A 37 1 8 HELIX 4 AA4 SER A 52 ILE A 58 1 7 HELIX 5 AA5 PRO A 59 ALA A 61 5 3 HELIX 6 AA6 THR A 75 ALA A 82 1 8 HELIX 7 AA7 ASP A 99 GLY A 107 1 9 HELIX 8 AA8 ASN A 119 ARG A 136 1 18 HELIX 9 AA9 ASN A 137 ASN A 147 1 11 HELIX 10 AB1 GLU A 151 LYS A 157 1 7 HELIX 11 AB2 GLY A 173 VAL A 184 1 12 HELIX 12 AB3 PRO A 185 ASN A 187 5 3 HELIX 13 AB4 PRO A 200 GLY A 208 1 9 HELIX 14 AB5 ASN A 214 GLN A 221 1 8 HELIX 15 AB6 ASN A 240 SER A 245 1 6 HELIX 16 AB7 ARG A 258 CYS A 262 5 5 HELIX 17 AB8 VAL A 263 SER A 273 1 11 HELIX 18 AB9 TYR A 312 THR A 315 5 4 HELIX 19 AC1 THR A 316 THR A 336 1 21 HELIX 20 AC2 ARG A 342 GLN A 344 5 3 HELIX 21 AC3 ALA B 10 GLU B 17 5 8 HELIX 22 AC4 ASN B 26 GLY B 29 5 4 HELIX 23 AC5 ILE B 30 GLN B 37 1 8 HELIX 24 AC6 SER B 52 ILE B 58 1 7 HELIX 25 AC7 PRO B 59 ALA B 61 5 3 HELIX 26 AC8 THR B 75 ALA B 82 1 8 HELIX 27 AC9 ASP B 99 THR B 106 1 8 HELIX 28 AD1 ASN B 119 ARG B 136 1 18 HELIX 29 AD2 ASN B 137 ASN B 147 1 11 HELIX 30 AD3 GLU B 151 LYS B 157 1 7 HELIX 31 AD4 GLY B 173 VAL B 184 1 12 HELIX 32 AD5 PRO B 185 ASN B 187 5 3 HELIX 33 AD6 PRO B 200 GLY B 208 1 9 HELIX 34 AD7 ASN B 214 GLN B 221 1 8 HELIX 35 AD8 ASN B 240 LYS B 246 1 7 HELIX 36 AD9 ARG B 258 CYS B 262 5 5 HELIX 37 AE1 VAL B 263 SER B 273 1 11 HELIX 38 AE2 HIS B 293 MET B 298 1 6 HELIX 39 AE3 TYR B 312 THR B 315 5 4 HELIX 40 AE4 THR B 316 THR B 336 1 21 HELIX 41 AE5 ARG B 342 GLN B 344 5 3 SHEET 1 AA1 7 GLU A 40 THR A 44 0 SHEET 2 AA1 7 LYS A 2 VAL A 6 1 N LEU A 5 O ILE A 42 SHEET 3 AA1 7 ILE A 63 THR A 66 1 O ILE A 65 N VAL A 4 SHEET 4 AA1 7 LEU A 87 VAL A 90 1 O VAL A 89 N THR A 66 SHEET 5 AA1 7 SER A 111 GLU A 114 1 O SER A 111 N VAL A 88 SHEET 6 AA1 7 ILE A 346 LEU A 349 -1 O ILE A 347 N VAL A 112 SHEET 7 AA1 7 GLU A 352 TYR A 353 -1 O GLU A 352 N LEU A 349 SHEET 1 AA2 7 ALA A 209 ARG A 211 0 SHEET 2 AA2 7 GLU A 190 TYR A 194 1 N LEU A 191 O ARG A 210 SHEET 3 AA2 7 THR A 166 ILE A 170 1 N ILE A 167 O LEU A 192 SHEET 4 AA2 7 ILE A 224 ILE A 227 1 O ILE A 224 N ALA A 168 SHEET 5 AA2 7 ALA A 251 ASN A 255 1 O VAL A 254 N VAL A 225 SHEET 6 AA2 7 LEU A 276 GLY A 281 1 O GLY A 280 N ASN A 255 SHEET 7 AA2 7 ASN A 306 MET A 308 1 O ALA A 307 N TYR A 279 SHEET 1 AA3 7 GLU B 40 THR B 44 0 SHEET 2 AA3 7 LYS B 2 VAL B 6 1 N ILE B 3 O GLU B 40 SHEET 3 AA3 7 ILE B 63 THR B 66 1 O ILE B 65 N VAL B 4 SHEET 4 AA3 7 LEU B 87 VAL B 90 1 O VAL B 89 N THR B 66 SHEET 5 AA3 7 SER B 111 GLU B 114 1 O SER B 111 N VAL B 88 SHEET 6 AA3 7 ILE B 346 LEU B 349 -1 O ILE B 347 N VAL B 112 SHEET 7 AA3 7 GLU B 352 TYR B 353 -1 O GLU B 352 N LEU B 349 SHEET 1 AA4 7 ALA B 209 ARG B 211 0 SHEET 2 AA4 7 GLU B 190 TYR B 194 1 N LEU B 191 O ARG B 210 SHEET 3 AA4 7 THR B 166 ILE B 170 1 N ILE B 167 O LEU B 192 SHEET 4 AA4 7 ILE B 224 ILE B 227 1 O ILE B 224 N ALA B 168 SHEET 5 AA4 7 ALA B 251 ASN B 255 1 O VAL B 254 N VAL B 225 SHEET 6 AA4 7 LEU B 276 GLY B 281 1 O ARG B 277 N ALA B 251 SHEET 7 AA4 7 ASN B 306 MET B 308 1 O ALA B 307 N TYR B 279 CISPEP 1 PHE A 285 PRO A 286 0 -9.11 CISPEP 2 GLN A 287 PRO A 288 0 -5.46 CISPEP 3 PHE B 285 PRO B 286 0 -7.16 CISPEP 4 GLN B 287 PRO B 288 0 -2.45 SITE 1 AC1 35 PHE A 69 VAL A 93 ASN A 119 VAL A 120 SITE 2 AC1 35 GLY A 171 GLY A 173 ARG A 174 ILE A 175 SITE 3 AC1 35 TYR A 194 ASP A 195 TYR A 196 ALA A 229 SITE 4 AC1 35 PRO A 230 HIS A 232 THR A 235 THR A 256 SITE 5 AC1 35 ALA A 257 ARG A 258 ASP A 282 VAL A 283 SITE 6 AC1 35 HIS A 311 SER A 313 GLY A 314 ALA A 357 SITE 7 AC1 35 AZI A 502 CL A 503 HOH A 644 HOH A 683 SITE 8 AC1 35 HOH A 696 HOH A 739 HOH A 746 HOH A 751 SITE 9 AC1 35 HOH A 754 HOH A 757 HOH A 897 SITE 1 AC2 7 PRO A 68 PHE A 69 VAL A 93 ASN A 119 SITE 2 AC2 7 ARG A 258 HIS A 311 NAD A 501 SITE 1 AC3 3 HIS A 232 NAD A 501 HOH A1069 SITE 1 AC4 36 PHE B 69 VAL B 93 ASN B 119 VAL B 120 SITE 2 AC4 36 GLY B 171 GLY B 173 ARG B 174 ILE B 175 SITE 3 AC4 36 TYR B 194 ASP B 195 TYR B 196 ASN B 228 SITE 4 AC4 36 ALA B 229 PRO B 230 HIS B 232 THR B 235 SITE 5 AC4 36 THR B 256 ALA B 257 ARG B 258 ASP B 282 SITE 6 AC4 36 VAL B 283 HIS B 311 SER B 313 GLY B 314 SITE 7 AC4 36 ALA B 357 AZI B 502 CL B 503 HOH B 667 SITE 8 AC4 36 HOH B 693 HOH B 700 HOH B 704 HOH B 747 SITE 9 AC4 36 HOH B 794 HOH B 808 HOH B 822 HOH B 831 SITE 1 AC5 7 PRO B 68 PHE B 69 VAL B 93 ASN B 119 SITE 2 AC5 7 ARG B 258 HIS B 311 NAD B 501 SITE 1 AC6 3 HIS B 232 NAD B 501 HOH B1037 CRYST1 51.171 116.098 63.088 90.00 106.84 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019542 0.000000 0.005916 0.00000 SCALE2 0.000000 0.008613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016561 0.00000