HEADER OXIDOREDUCTASE 17-APR-18 6D4C TITLE CRYSTAL STRUCTURE OF CANDIDA BOIDINII FORMATE DEHYDROGENASE V123G TITLE 2 MUTANT COMPLEXED WITH NAD+ AND AZIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORMATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FDH,NAD-DEPENDENT FORMATE DEHYDROGENASE; COMPND 5 EC: 1.17.1.9; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA BOIDINII; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 5477; SOURCE 5 GENE: FDH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS TERNARY COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.GUO,H.YE,L.GAKHAR,C.M.CHEATUM,A.KOHEN REVDAT 4 04-OCT-23 6D4C 1 REMARK REVDAT 3 01-JAN-20 6D4C 1 REMARK REVDAT 2 06-NOV-19 6D4C 1 JRNL REVDAT 1 24-APR-19 6D4C 0 JRNL AUTH P.L.PAGANO,Q.GUO,C.RANASINGHE,E.SCHROEDER,K.ROBBEN,F.HASE, JRNL AUTH 2 H.YE,K.WICKERSHAM,A.ASPURU-GUZIK,D.T.MAJOR,L.GAKHAR,A.KOHEN, JRNL AUTH 3 C.M.CHEATUM JRNL TITL OSCILLATORY ACTIVE-SITE MOTIONS CORRELATE WITH KINETIC JRNL TITL 2 ISOTOPE EFFECTS IN FORMATE DEHYDROGENASE JRNL REF ACS CATALYSIS 2019 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.9B03345 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 123164 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 11342 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0081 - 4.5041 0.95 7611 389 0.1213 0.1310 REMARK 3 2 4.5041 - 3.5755 0.94 7618 355 0.1215 0.1323 REMARK 3 3 3.5755 - 3.1236 0.94 7482 386 0.1343 0.1725 REMARK 3 4 3.1236 - 2.8381 0.94 7500 414 0.1339 0.1398 REMARK 3 5 2.8381 - 2.6347 0.95 7607 384 0.1319 0.1528 REMARK 3 6 2.6347 - 2.4794 0.94 7620 373 0.1334 0.1677 REMARK 3 7 2.4794 - 2.3552 0.94 7577 367 0.1382 0.1718 REMARK 3 8 2.3552 - 2.2527 0.94 7472 382 0.1387 0.1761 REMARK 3 9 2.2527 - 2.1660 0.93 7536 392 0.1447 0.1826 REMARK 3 10 2.1660 - 2.0912 0.94 7482 387 0.1477 0.1722 REMARK 3 11 2.0912 - 2.0258 0.94 7543 356 0.1551 0.1745 REMARK 3 12 2.0258 - 1.9679 0.94 7500 395 0.1591 0.2023 REMARK 3 13 1.9679 - 1.9161 0.93 7448 372 0.1618 0.1993 REMARK 3 14 1.9161 - 1.8694 0.93 7441 411 0.1753 0.2031 REMARK 3 15 1.8694 - 1.8269 0.94 7565 336 0.1753 0.1980 REMARK 3 16 1.8269 - 1.7880 0.94 7655 367 0.1740 0.2059 REMARK 3 17 1.7880 - 1.7522 0.94 7466 346 0.1837 0.2146 REMARK 3 18 1.7522 - 1.7192 0.93 7483 401 0.1887 0.2184 REMARK 3 19 1.7192 - 1.6885 0.93 7461 368 0.2021 0.2537 REMARK 3 20 1.6885 - 1.6598 0.91 7295 418 0.2083 0.2200 REMARK 3 21 1.6598 - 1.6331 0.89 7161 360 0.2130 0.2205 REMARK 3 22 1.6331 - 1.6079 0.89 7018 409 0.2220 0.2302 REMARK 3 23 1.6079 - 1.5843 0.88 7006 392 0.2335 0.2529 REMARK 3 24 1.5843 - 1.5620 0.87 6984 391 0.2382 0.2625 REMARK 3 25 1.5620 - 1.5409 0.87 7000 342 0.2434 0.2670 REMARK 3 26 1.5409 - 1.5208 0.86 6891 343 0.2506 0.2857 REMARK 3 27 1.5208 - 1.5018 0.85 6728 377 0.2657 0.2917 REMARK 3 28 1.5018 - 1.4837 0.85 6823 386 0.2773 0.2943 REMARK 3 29 1.4837 - 1.4665 0.86 6841 400 0.2852 0.2958 REMARK 3 30 1.4665 - 1.4500 0.86 7082 343 0.2953 0.2899 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5899 REMARK 3 ANGLE : 1.010 8023 REMARK 3 CHIRALITY : 0.079 897 REMARK 3 PLANARITY : 0.007 1024 REMARK 3 DIHEDRAL : 16.300 2145 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6D4C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233975. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 123164 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 45.985 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5DN9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 25% PEG 3000, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 57.94950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 362 REMARK 465 LYS A 363 REMARK 465 LYS A 364 REMARK 465 ASP B 362 REMARK 465 LYS B 363 REMARK 465 LYS B 364 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS B 338 O HOH B 606 1.52 REMARK 500 HE2 HIS A 361 O HOH A 605 1.60 REMARK 500 O HOH A 1097 O HOH A 1101 1.94 REMARK 500 O HOH A 727 O HOH A 971 1.95 REMARK 500 O HOH A 649 O HOH A 785 2.00 REMARK 500 O HOH B 682 O HOH B 817 2.04 REMARK 500 O HOH B 666 O HOH B 925 2.05 REMARK 500 O HOH A 708 O HOH A 759 2.06 REMARK 500 O HOH A 825 O HOH A 1008 2.07 REMARK 500 O HOH B 637 O HOH B 987 2.07 REMARK 500 O HOH B 824 O HOH B 1025 2.09 REMARK 500 O HOH A 644 O HOH A 922 2.10 REMARK 500 O HOH B 956 O HOH B 975 2.12 REMARK 500 O HOH A 680 O HOH B 903 2.12 REMARK 500 O HOH A 823 O HOH A 1056 2.13 REMARK 500 O HOH A 695 O HOH A 1005 2.13 REMARK 500 O HOH A 955 O HOH A 1083 2.13 REMARK 500 O HOH A 906 O HOH B 676 2.14 REMARK 500 O HOH B 933 O HOH B 1058 2.14 REMARK 500 O HOH B 616 O HOH B 985 2.15 REMARK 500 O HOH A 1046 O HOH B 1050 2.17 REMARK 500 O HOH B 948 O HOH B 1089 2.17 REMARK 500 O HOH A 945 O HOH A 953 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 782 O HOH B 1044 2747 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 228 45.77 -145.89 REMARK 500 ALA A 257 -83.17 -86.52 REMARK 500 ALA A 304 -150.78 -135.57 REMARK 500 TYR A 312 -5.06 -140.33 REMARK 500 TYR A 358 40.70 -104.78 REMARK 500 LEU B 28 15.97 57.76 REMARK 500 ASN B 119 26.64 -143.02 REMARK 500 ASN B 228 42.91 -144.11 REMARK 500 ALA B 257 -83.45 -87.43 REMARK 500 ALA B 304 -148.04 -134.64 REMARK 500 TYR B 358 41.32 -109.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1116 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1117 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A1118 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH B1130 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B1131 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B1132 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B1133 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B1134 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH B1135 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH B1136 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH B1137 DISTANCE = 6.76 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AZI A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AZI B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DN9 RELATED DB: PDB DBREF1 6D4C A 1 364 UNP A0A0A1EQY0_CANBO DBREF2 6D4C A A0A0A1EQY0 1 364 DBREF1 6D4C B 1 364 UNP A0A0A1EQY0_CANBO DBREF2 6D4C B A0A0A1EQY0 1 364 SEQADV 6D4C GLY A 123 UNP A0A0A1EQY VAL 123 ENGINEERED MUTATION SEQADV 6D4C GLY B 123 UNP A0A0A1EQY VAL 123 ENGINEERED MUTATION SEQRES 1 A 364 MET LYS ILE VAL LEU VAL LEU TYR ASP ALA GLY LYS HIS SEQRES 2 A 364 ALA ALA ASP GLU GLU LYS LEU TYR GLY CYS THR GLU ASN SEQRES 3 A 364 LYS LEU GLY ILE ALA ASN TRP LEU LYS ASP GLN GLY HIS SEQRES 4 A 364 GLU LEU ILE THR THR SER ASP LYS GLU GLY GLY ASN SER SEQRES 5 A 364 VAL LEU ASP GLN HIS ILE PRO ASP ALA ASP ILE ILE ILE SEQRES 6 A 364 THR THR PRO PHE HIS PRO ALA TYR ILE THR LYS GLU ARG SEQRES 7 A 364 ILE ASP LYS ALA LYS LYS LEU LYS LEU VAL VAL VAL ALA SEQRES 8 A 364 GLY VAL GLY SER ASP HIS ILE ASP LEU ASP TYR ILE ASN SEQRES 9 A 364 GLN THR GLY LYS LYS ILE SER VAL LEU GLU VAL THR GLY SEQRES 10 A 364 SER ASN VAL VAL SER GLY ALA GLU HIS VAL LEU MET THR SEQRES 11 A 364 MET LEU VAL LEU VAL ARG ASN PHE VAL PRO ALA HIS GLU SEQRES 12 A 364 GLN ILE ILE ASN HIS ASP TRP GLU VAL ALA ALA ILE ALA SEQRES 13 A 364 LYS ASP ALA TYR ASP ILE GLU GLY LYS THR ILE ALA THR SEQRES 14 A 364 ILE GLY ALA GLY ARG ILE GLY TYR ARG VAL LEU GLU ARG SEQRES 15 A 364 LEU VAL PRO PHE ASN PRO LYS GLU LEU LEU TYR TYR ASP SEQRES 16 A 364 TYR GLN ALA LEU PRO LYS ASP ALA GLU GLU LYS VAL GLY SEQRES 17 A 364 ALA ARG ARG VAL GLU ASN ILE GLU GLU LEU VAL ALA GLN SEQRES 18 A 364 ALA ASP ILE VAL THR ILE ASN ALA PRO LEU HIS ALA GLY SEQRES 19 A 364 THR LYS GLY LEU ILE ASN LYS GLU LEU LEU SER LYS PHE SEQRES 20 A 364 LYS LYS GLY ALA TRP LEU VAL ASN THR ALA ARG GLY ALA SEQRES 21 A 364 ILE CYS VAL ALA GLU ASP VAL ALA ALA ALA LEU GLU SER SEQRES 22 A 364 GLY GLN LEU ARG GLY TYR GLY GLY ASP VAL TRP PHE PRO SEQRES 23 A 364 GLN PRO ALA PRO LYS ASP HIS PRO TRP ARG ASP MET ARG SEQRES 24 A 364 ASN LYS TYR GLY ALA GLY ASN ALA MET THR PRO HIS TYR SEQRES 25 A 364 SER GLY THR THR LEU ASP ALA GLN THR ARG TYR ALA GLU SEQRES 26 A 364 GLY THR LYS ASN ILE LEU GLU SER PHE PHE THR GLY LYS SEQRES 27 A 364 PHE ASP TYR ARG PRO GLN ASP ILE ILE LEU LEU ASN GLY SEQRES 28 A 364 GLU TYR ILE THR LYS ALA TYR GLY LYS HIS ASP LYS LYS SEQRES 1 B 364 MET LYS ILE VAL LEU VAL LEU TYR ASP ALA GLY LYS HIS SEQRES 2 B 364 ALA ALA ASP GLU GLU LYS LEU TYR GLY CYS THR GLU ASN SEQRES 3 B 364 LYS LEU GLY ILE ALA ASN TRP LEU LYS ASP GLN GLY HIS SEQRES 4 B 364 GLU LEU ILE THR THR SER ASP LYS GLU GLY GLY ASN SER SEQRES 5 B 364 VAL LEU ASP GLN HIS ILE PRO ASP ALA ASP ILE ILE ILE SEQRES 6 B 364 THR THR PRO PHE HIS PRO ALA TYR ILE THR LYS GLU ARG SEQRES 7 B 364 ILE ASP LYS ALA LYS LYS LEU LYS LEU VAL VAL VAL ALA SEQRES 8 B 364 GLY VAL GLY SER ASP HIS ILE ASP LEU ASP TYR ILE ASN SEQRES 9 B 364 GLN THR GLY LYS LYS ILE SER VAL LEU GLU VAL THR GLY SEQRES 10 B 364 SER ASN VAL VAL SER GLY ALA GLU HIS VAL LEU MET THR SEQRES 11 B 364 MET LEU VAL LEU VAL ARG ASN PHE VAL PRO ALA HIS GLU SEQRES 12 B 364 GLN ILE ILE ASN HIS ASP TRP GLU VAL ALA ALA ILE ALA SEQRES 13 B 364 LYS ASP ALA TYR ASP ILE GLU GLY LYS THR ILE ALA THR SEQRES 14 B 364 ILE GLY ALA GLY ARG ILE GLY TYR ARG VAL LEU GLU ARG SEQRES 15 B 364 LEU VAL PRO PHE ASN PRO LYS GLU LEU LEU TYR TYR ASP SEQRES 16 B 364 TYR GLN ALA LEU PRO LYS ASP ALA GLU GLU LYS VAL GLY SEQRES 17 B 364 ALA ARG ARG VAL GLU ASN ILE GLU GLU LEU VAL ALA GLN SEQRES 18 B 364 ALA ASP ILE VAL THR ILE ASN ALA PRO LEU HIS ALA GLY SEQRES 19 B 364 THR LYS GLY LEU ILE ASN LYS GLU LEU LEU SER LYS PHE SEQRES 20 B 364 LYS LYS GLY ALA TRP LEU VAL ASN THR ALA ARG GLY ALA SEQRES 21 B 364 ILE CYS VAL ALA GLU ASP VAL ALA ALA ALA LEU GLU SER SEQRES 22 B 364 GLY GLN LEU ARG GLY TYR GLY GLY ASP VAL TRP PHE PRO SEQRES 23 B 364 GLN PRO ALA PRO LYS ASP HIS PRO TRP ARG ASP MET ARG SEQRES 24 B 364 ASN LYS TYR GLY ALA GLY ASN ALA MET THR PRO HIS TYR SEQRES 25 B 364 SER GLY THR THR LEU ASP ALA GLN THR ARG TYR ALA GLU SEQRES 26 B 364 GLY THR LYS ASN ILE LEU GLU SER PHE PHE THR GLY LYS SEQRES 27 B 364 PHE ASP TYR ARG PRO GLN ASP ILE ILE LEU LEU ASN GLY SEQRES 28 B 364 GLU TYR ILE THR LYS ALA TYR GLY LYS HIS ASP LYS LYS HET NAD A 501 70 HET AZI A 502 3 HET CL A 503 1 HET NAD B 501 70 HET AZI B 502 3 HET CL B 503 1 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM AZI AZIDE ION HETNAM CL CHLORIDE ION FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 AZI 2(N3 1-) FORMUL 5 CL 2(CL 1-) FORMUL 9 HOH *1055(H2 O) HELIX 1 AA1 ALA A 10 GLU A 17 5 8 HELIX 2 AA2 ASN A 26 GLY A 29 5 4 HELIX 3 AA3 ILE A 30 GLN A 37 1 8 HELIX 4 AA4 SER A 52 ILE A 58 1 7 HELIX 5 AA5 PRO A 59 ALA A 61 5 3 HELIX 6 AA6 THR A 75 ALA A 82 1 8 HELIX 7 AA7 ASP A 99 GLY A 107 1 9 HELIX 8 AA8 ASN A 119 ARG A 136 1 18 HELIX 9 AA9 ASN A 137 ASN A 147 1 11 HELIX 10 AB1 GLU A 151 LYS A 157 1 7 HELIX 11 AB2 GLY A 173 VAL A 184 1 12 HELIX 12 AB3 PRO A 185 ASN A 187 5 3 HELIX 13 AB4 PRO A 200 GLY A 208 1 9 HELIX 14 AB5 ASN A 214 GLN A 221 1 8 HELIX 15 AB6 ASN A 240 SER A 245 1 6 HELIX 16 AB7 ARG A 258 CYS A 262 5 5 HELIX 17 AB8 VAL A 263 SER A 273 1 11 HELIX 18 AB9 HIS A 293 MET A 298 1 6 HELIX 19 AC1 TYR A 312 THR A 315 5 4 HELIX 20 AC2 THR A 316 THR A 336 1 21 HELIX 21 AC3 ARG A 342 GLN A 344 5 3 HELIX 22 AC4 ALA B 10 GLU B 17 5 8 HELIX 23 AC5 ASN B 26 GLY B 29 5 4 HELIX 24 AC6 ILE B 30 GLN B 37 1 8 HELIX 25 AC7 SER B 52 ILE B 58 1 7 HELIX 26 AC8 PRO B 59 ALA B 61 5 3 HELIX 27 AC9 THR B 75 ALA B 82 1 8 HELIX 28 AD1 ASP B 99 THR B 106 1 8 HELIX 29 AD2 ASN B 119 ARG B 136 1 18 HELIX 30 AD3 ASN B 137 ASN B 147 1 11 HELIX 31 AD4 GLU B 151 LYS B 157 1 7 HELIX 32 AD5 GLY B 173 VAL B 184 1 12 HELIX 33 AD6 PRO B 185 ASN B 187 5 3 HELIX 34 AD7 PRO B 200 GLY B 208 1 9 HELIX 35 AD8 ASN B 214 GLN B 221 1 8 HELIX 36 AD9 ASN B 240 SER B 245 1 6 HELIX 37 AE1 ARG B 258 CYS B 262 5 5 HELIX 38 AE2 VAL B 263 SER B 273 1 11 HELIX 39 AE3 TYR B 312 THR B 315 5 4 HELIX 40 AE4 THR B 316 THR B 336 1 21 HELIX 41 AE5 ARG B 342 GLN B 344 5 3 SHEET 1 AA1 7 GLU A 40 THR A 44 0 SHEET 2 AA1 7 LYS A 2 VAL A 6 1 N LEU A 5 O ILE A 42 SHEET 3 AA1 7 ILE A 63 THR A 66 1 O ILE A 65 N VAL A 4 SHEET 4 AA1 7 LEU A 87 VAL A 90 1 O VAL A 89 N THR A 66 SHEET 5 AA1 7 SER A 111 GLU A 114 1 O SER A 111 N VAL A 88 SHEET 6 AA1 7 ILE A 346 LEU A 349 -1 O ILE A 347 N VAL A 112 SHEET 7 AA1 7 GLU A 352 TYR A 353 -1 O GLU A 352 N LEU A 349 SHEET 1 AA2 7 ALA A 209 ARG A 211 0 SHEET 2 AA2 7 GLU A 190 TYR A 194 1 N LEU A 191 O ARG A 210 SHEET 3 AA2 7 THR A 166 ILE A 170 1 N ILE A 167 O LEU A 192 SHEET 4 AA2 7 ILE A 224 ILE A 227 1 O ILE A 224 N ALA A 168 SHEET 5 AA2 7 ALA A 251 ASN A 255 1 O VAL A 254 N VAL A 225 SHEET 6 AA2 7 LEU A 276 GLY A 281 1 O ARG A 277 N ALA A 251 SHEET 7 AA2 7 ASN A 306 MET A 308 1 O ALA A 307 N TYR A 279 SHEET 1 AA3 7 GLU B 40 THR B 44 0 SHEET 2 AA3 7 LYS B 2 VAL B 6 1 N LEU B 5 O ILE B 42 SHEET 3 AA3 7 ILE B 63 THR B 66 1 O ILE B 65 N VAL B 4 SHEET 4 AA3 7 LEU B 87 VAL B 90 1 O VAL B 89 N THR B 66 SHEET 5 AA3 7 SER B 111 GLU B 114 1 O SER B 111 N VAL B 88 SHEET 6 AA3 7 ILE B 346 LEU B 349 -1 O ILE B 347 N VAL B 112 SHEET 7 AA3 7 GLU B 352 TYR B 353 -1 O GLU B 352 N LEU B 349 SHEET 1 AA4 7 ALA B 209 ARG B 211 0 SHEET 2 AA4 7 GLU B 190 TYR B 194 1 N LEU B 191 O ARG B 210 SHEET 3 AA4 7 THR B 166 ILE B 170 1 N ILE B 167 O LEU B 192 SHEET 4 AA4 7 ILE B 224 ILE B 227 1 O ILE B 224 N ALA B 168 SHEET 5 AA4 7 ALA B 251 ASN B 255 1 O VAL B 254 N VAL B 225 SHEET 6 AA4 7 LEU B 276 GLY B 281 1 O ARG B 277 N ALA B 251 SHEET 7 AA4 7 ASN B 306 MET B 308 1 O ALA B 307 N TYR B 279 CISPEP 1 PHE A 285 PRO A 286 0 -4.45 CISPEP 2 GLN A 287 PRO A 288 0 -0.78 CISPEP 3 PHE B 285 PRO B 286 0 -5.91 CISPEP 4 GLN B 287 PRO B 288 0 -3.41 SITE 1 AC1 36 PHE A 69 VAL A 93 ASN A 119 VAL A 120 SITE 2 AC1 36 GLY A 171 GLY A 173 ARG A 174 ILE A 175 SITE 3 AC1 36 TYR A 194 ASP A 195 TYR A 196 ASN A 228 SITE 4 AC1 36 ALA A 229 PRO A 230 HIS A 232 THR A 235 SITE 5 AC1 36 THR A 256 ALA A 257 ARG A 258 ASP A 282 SITE 6 AC1 36 VAL A 283 HIS A 311 SER A 313 GLY A 314 SITE 7 AC1 36 ALA A 357 AZI A 502 CL A 503 HOH A 661 SITE 8 AC1 36 HOH A 670 HOH A 685 HOH A 711 HOH A 717 SITE 9 AC1 36 HOH A 718 HOH A 739 HOH A 812 HOH A 842 SITE 1 AC2 7 PRO A 68 PHE A 69 VAL A 93 ASN A 119 SITE 2 AC2 7 ARG A 258 HIS A 311 NAD A 501 SITE 1 AC3 4 HIS A 232 NAD A 501 HOH A 993 HOH A1066 SITE 1 AC4 35 PHE B 69 VAL B 93 ASN B 119 VAL B 120 SITE 2 AC4 35 GLY B 171 GLY B 173 ARG B 174 ILE B 175 SITE 3 AC4 35 TYR B 194 ASP B 195 TYR B 196 ALA B 229 SITE 4 AC4 35 PRO B 230 HIS B 232 THR B 235 THR B 256 SITE 5 AC4 35 ALA B 257 ARG B 258 ASP B 282 VAL B 283 SITE 6 AC4 35 HIS B 311 SER B 313 GLY B 314 ALA B 357 SITE 7 AC4 35 AZI B 502 CL B 503 HOH B 644 HOH B 646 SITE 8 AC4 35 HOH B 652 HOH B 672 HOH B 726 HOH B 761 SITE 9 AC4 35 HOH B 769 HOH B 825 HOH B 876 SITE 1 AC5 7 PRO B 68 PHE B 69 VAL B 93 ASN B 119 SITE 2 AC5 7 ARG B 258 HIS B 311 NAD B 501 SITE 1 AC6 3 HIS B 232 NAD B 501 HOH B 990 CRYST1 51.188 115.899 65.469 90.00 108.56 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019536 0.000000 0.006560 0.00000 SCALE2 0.000000 0.008628 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016113 0.00000