HEADER SIGNALING PROTEIN 19-APR-18 6D5E TITLE RAS:SOS:RAS IN COMPLEX WITH A SMALL MOLECULE ACTIVATOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H-RAS-1,HA-RAS,TRANSFORMING PROTEIN P21,C-H-RAS,P21RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SON OF SEVENLESS HOMOLOG 1; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: SOS-1; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: GTPASE HRAS; COMPND 14 CHAIN: C; COMPND 15 SYNONYM: H-RAS-1,HA-RAS,TRANSFORMING PROTEIN P21,C-H-RAS,P21RAS; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: SOS1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: HRAS, HRAS1; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RAS, SOS, INHIBITOR, ONCOPROTEIN, PROTEIN-PROTEIN COMPLEX, MAPK, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.PHAN,T.HODGES,S.W.FESIK REVDAT 4 15-NOV-23 6D5E 1 REMARK REVDAT 3 04-OCT-23 6D5E 1 LINK REVDAT 2 07-NOV-18 6D5E 1 JRNL REVDAT 1 19-SEP-18 6D5E 0 JRNL AUTH T.R.HODGES,J.R.ABBOTT,A.J.LITTLE,D.SARKAR,J.M.SALOVICH, JRNL AUTH 2 J.E.HOWES,D.T.AKAN,J.SAI,A.L.ARNOLD,C.BROWNING,M.C.BURNS, JRNL AUTH 3 T.SOBOLIK,Q.SUN,Y.BEESETTY,J.A.COKER,D.SCHARN, JRNL AUTH 4 H.STADTMUELLER,O.W.ROSSANESE,J.PHAN,A.G.WATERSON, JRNL AUTH 5 D.B.MCCONNELL,S.W.FESIK JRNL TITL DISCOVERY AND STRUCTURE-BASED OPTIMIZATION OF JRNL TITL 2 BENZIMIDAZOLE-DERIVED ACTIVATORS OF SOS1-MEDIATED NUCLEOTIDE JRNL TITL 3 EXCHANGE ON RAS. JRNL REF J. MED. CHEM. V. 61 8875 2018 JRNL REFN ISSN 1520-4804 JRNL PMID 30205005 JRNL DOI 10.1021/ACS.JMEDCHEM.8B01108 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.C.BURNS,Q.SUN,R.N.DANIELS,D.CAMPER,J.P.KENNEDY,J.PHAN, REMARK 1 AUTH 2 E.T.OLEJNICZAK,T.LEE,A.G.WATERSON,O.W.ROSSANESE,S.W.FESIK REMARK 1 TITL APPROACH FOR TARGETING RAS WITH SMALL MOLECULES THAT REMARK 1 TITL 2 ACTIVATE SOS-MEDIATED NUCLEOTIDE EXCHANGE. REMARK 1 REF PROC. NATL. ACAD. SCI. V. 111 3401 2014 REMARK 1 REF 2 U.S.A. REMARK 1 REFN ESSN 1091-6490 REMARK 1 PMID 24550516 REMARK 1 DOI 10.1073/PNAS.1315798111 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 152578 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 7684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7439 - 5.4306 1.00 5164 232 0.1681 0.1660 REMARK 3 2 5.4306 - 4.3113 1.00 4943 291 0.1340 0.1386 REMARK 3 3 4.3113 - 3.7665 1.00 4869 295 0.1280 0.1266 REMARK 3 4 3.7665 - 3.4223 1.00 4896 250 0.1402 0.1558 REMARK 3 5 3.4223 - 3.1770 1.00 4900 235 0.1523 0.1664 REMARK 3 6 3.1770 - 2.9897 1.00 4874 247 0.1576 0.1921 REMARK 3 7 2.9897 - 2.8400 1.00 4819 270 0.1609 0.1729 REMARK 3 8 2.8400 - 2.7164 1.00 4853 255 0.1670 0.1827 REMARK 3 9 2.7164 - 2.6118 1.00 4873 246 0.1678 0.1897 REMARK 3 10 2.6118 - 2.5217 1.00 4759 299 0.1581 0.1750 REMARK 3 11 2.5217 - 2.4429 1.00 4813 261 0.1621 0.1867 REMARK 3 12 2.4429 - 2.3731 1.00 4833 239 0.1625 0.1935 REMARK 3 13 2.3731 - 2.3106 1.00 4796 286 0.1605 0.2031 REMARK 3 14 2.3106 - 2.2542 1.00 4811 254 0.1637 0.1737 REMARK 3 15 2.2542 - 2.2030 1.00 4808 260 0.1586 0.1810 REMARK 3 16 2.2030 - 2.1561 1.00 4794 254 0.1591 0.1814 REMARK 3 17 2.1561 - 2.1130 1.00 4812 265 0.1603 0.1790 REMARK 3 18 2.1130 - 2.0731 1.00 4764 261 0.1616 0.1916 REMARK 3 19 2.0731 - 2.0361 1.00 4818 243 0.1730 0.1799 REMARK 3 20 2.0361 - 2.0015 1.00 4827 235 0.1697 0.1785 REMARK 3 21 2.0015 - 1.9693 1.00 4791 253 0.1704 0.2048 REMARK 3 22 1.9693 - 1.9390 1.00 4831 223 0.1789 0.1959 REMARK 3 23 1.9390 - 1.9104 1.00 4722 310 0.1836 0.2173 REMARK 3 24 1.9104 - 1.8835 1.00 4739 302 0.1883 0.2139 REMARK 3 25 1.8835 - 1.8581 1.00 4811 239 0.2035 0.2374 REMARK 3 26 1.8581 - 1.8339 1.00 4806 230 0.2101 0.2190 REMARK 3 27 1.8339 - 1.8110 1.00 4830 228 0.2221 0.2295 REMARK 3 28 1.8110 - 1.7892 1.00 4806 233 0.2346 0.2730 REMARK 3 29 1.7892 - 1.7684 1.00 4775 248 0.2449 0.2648 REMARK 3 30 1.7684 - 1.7500 0.99 4757 240 0.2651 0.2860 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7174 REMARK 3 ANGLE : 0.844 9748 REMARK 3 CHIRALITY : 0.053 1050 REMARK 3 PLANARITY : 0.005 1312 REMARK 3 DIHEDRAL : 14.616 4428 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6588 48.6206 60.2877 REMARK 3 T TENSOR REMARK 3 T11: 0.1711 T22: 0.1895 REMARK 3 T33: 0.1824 T12: -0.0329 REMARK 3 T13: 0.0168 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.0443 L22: 0.1729 REMARK 3 L33: 0.1899 L12: 0.0704 REMARK 3 L13: 0.0828 L23: 0.1732 REMARK 3 S TENSOR REMARK 3 S11: 0.0011 S12: -0.0025 S13: 0.0088 REMARK 3 S21: -0.0106 S22: 0.0109 S23: 0.0314 REMARK 3 S31: 0.0459 S32: -0.0176 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0524 45.9634 73.4592 REMARK 3 T TENSOR REMARK 3 T11: 0.2884 T22: 0.2718 REMARK 3 T33: 0.2060 T12: -0.0599 REMARK 3 T13: 0.0136 T23: 0.0233 REMARK 3 L TENSOR REMARK 3 L11: 0.0433 L22: 0.0071 REMARK 3 L33: 0.0275 L12: 0.0180 REMARK 3 L13: 0.0433 L23: 0.0163 REMARK 3 S TENSOR REMARK 3 S11: 0.0365 S12: -0.1930 S13: -0.2124 REMARK 3 S21: 0.2219 S22: -0.0727 S23: 0.0611 REMARK 3 S31: 0.2439 S32: -0.0276 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0593 57.1259 74.9436 REMARK 3 T TENSOR REMARK 3 T11: 0.2178 T22: 0.2356 REMARK 3 T33: 0.1790 T12: -0.0535 REMARK 3 T13: 0.0214 T23: -0.0340 REMARK 3 L TENSOR REMARK 3 L11: 0.0720 L22: 0.0867 REMARK 3 L33: 0.0447 L12: 0.0848 REMARK 3 L13: -0.0115 L23: -0.0138 REMARK 3 S TENSOR REMARK 3 S11: 0.1224 S12: -0.2720 S13: 0.1202 REMARK 3 S21: 0.1294 S22: -0.0533 S23: 0.0463 REMARK 3 S31: -0.0548 S32: 0.0590 S33: 0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3689 61.5850 63.9948 REMARK 3 T TENSOR REMARK 3 T11: 0.1968 T22: 0.1785 REMARK 3 T33: 0.1991 T12: -0.0375 REMARK 3 T13: 0.0180 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 0.1549 L22: 0.1820 REMARK 3 L33: 0.1176 L12: 0.2071 REMARK 3 L13: -0.0527 L23: -0.0159 REMARK 3 S TENSOR REMARK 3 S11: 0.0760 S12: 0.0088 S13: 0.1211 REMARK 3 S21: -0.0408 S22: -0.0238 S23: 0.0394 REMARK 3 S31: -0.1222 S32: 0.1010 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 565 THROUGH 723 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7833 31.0838 78.1976 REMARK 3 T TENSOR REMARK 3 T11: 0.1710 T22: 0.1837 REMARK 3 T33: 0.1629 T12: -0.0235 REMARK 3 T13: 0.0010 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.1164 L22: 0.2350 REMARK 3 L33: 0.5526 L12: -0.1172 REMARK 3 L13: -0.2439 L23: 0.1159 REMARK 3 S TENSOR REMARK 3 S11: -0.0191 S12: -0.0067 S13: 0.0199 REMARK 3 S21: 0.0216 S22: 0.0038 S23: 0.0193 REMARK 3 S31: 0.0093 S32: 0.0507 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 724 THROUGH 768 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3527 49.0919 52.8135 REMARK 3 T TENSOR REMARK 3 T11: 0.2224 T22: 0.2316 REMARK 3 T33: 0.2399 T12: -0.0235 REMARK 3 T13: 0.0060 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.0311 L22: 0.1554 REMARK 3 L33: 0.1028 L12: -0.0032 REMARK 3 L13: -0.0489 L23: 0.1372 REMARK 3 S TENSOR REMARK 3 S11: 0.1573 S12: 0.0065 S13: 0.1015 REMARK 3 S21: 0.0763 S22: 0.0638 S23: 0.1168 REMARK 3 S31: -0.3502 S32: -0.0591 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 769 THROUGH 1046 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4601 33.4742 33.1894 REMARK 3 T TENSOR REMARK 3 T11: 0.1163 T22: 0.1214 REMARK 3 T33: 0.1254 T12: -0.0255 REMARK 3 T13: 0.0121 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.2262 L22: 0.3067 REMARK 3 L33: 0.6773 L12: 0.0668 REMARK 3 L13: -0.1335 L23: -0.1955 REMARK 3 S TENSOR REMARK 3 S11: -0.0478 S12: 0.0253 S13: -0.0115 REMARK 3 S21: -0.0241 S22: 0.0298 S23: -0.0160 REMARK 3 S31: 0.0197 S32: 0.0137 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 0 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6832 12.2211 41.8778 REMARK 3 T TENSOR REMARK 3 T11: 0.1802 T22: 0.1570 REMARK 3 T33: 0.2590 T12: 0.0164 REMARK 3 T13: 0.0096 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.0096 L22: 0.0963 REMARK 3 L33: 0.0522 L12: -0.0068 REMARK 3 L13: -0.0035 L23: -0.0791 REMARK 3 S TENSOR REMARK 3 S11: -0.0661 S12: -0.0404 S13: 0.1467 REMARK 3 S21: 0.0758 S22: 0.0106 S23: -0.1715 REMARK 3 S31: -0.0329 S32: -0.0054 S33: -0.0007 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 25 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2079 12.5650 56.0400 REMARK 3 T TENSOR REMARK 3 T11: 0.4000 T22: 0.2209 REMARK 3 T33: 0.5236 T12: 0.0221 REMARK 3 T13: -0.1282 T23: 0.0550 REMARK 3 L TENSOR REMARK 3 L11: -0.0020 L22: 0.0141 REMARK 3 L33: 0.0044 L12: -0.0057 REMARK 3 L13: -0.0052 L23: -0.0104 REMARK 3 S TENSOR REMARK 3 S11: 0.1236 S12: 0.0740 S13: -0.1436 REMARK 3 S21: 0.1169 S22: 0.1366 S23: 0.0299 REMARK 3 S31: 0.2727 S32: 0.0224 S33: -0.0001 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 35 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9360 14.2227 46.2842 REMARK 3 T TENSOR REMARK 3 T11: 0.2722 T22: 0.3097 REMARK 3 T33: 0.5210 T12: 0.0627 REMARK 3 T13: -0.0941 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: -0.0046 L22: 0.0249 REMARK 3 L33: 0.0325 L12: 0.0121 REMARK 3 L13: -0.0243 L23: -0.0293 REMARK 3 S TENSOR REMARK 3 S11: 0.0004 S12: -0.0545 S13: 0.0635 REMARK 3 S21: 0.0091 S22: -0.1529 S23: -0.1164 REMARK 3 S31: -0.1406 S32: 0.1258 S33: -0.0012 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 49 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4254 18.9182 36.5092 REMARK 3 T TENSOR REMARK 3 T11: 0.1619 T22: 0.1297 REMARK 3 T33: 0.2340 T12: -0.0042 REMARK 3 T13: 0.0343 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 0.0465 L22: 0.1220 REMARK 3 L33: 0.3220 L12: 0.0359 REMARK 3 L13: 0.0972 L23: 0.1400 REMARK 3 S TENSOR REMARK 3 S11: -0.0646 S12: 0.0262 S13: -0.0533 REMARK 3 S21: -0.0402 S22: -0.0354 S23: -0.2219 REMARK 3 S31: -0.0065 S32: -0.0272 S33: -0.0310 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 75 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2705 8.8221 31.7705 REMARK 3 T TENSOR REMARK 3 T11: 0.2020 T22: 0.1672 REMARK 3 T33: 0.1806 T12: 0.0359 REMARK 3 T13: 0.0186 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.0274 L22: 0.2394 REMARK 3 L33: 0.0446 L12: -0.0148 REMARK 3 L13: -0.0953 L23: 0.0297 REMARK 3 S TENSOR REMARK 3 S11: 0.1255 S12: 0.1022 S13: -0.0563 REMARK 3 S21: -0.1733 S22: -0.0695 S23: 0.0383 REMARK 3 S31: -0.0115 S32: -0.0011 S33: 0.0000 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 118 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2582 -2.0033 36.5508 REMARK 3 T TENSOR REMARK 3 T11: 0.2365 T22: 0.1871 REMARK 3 T33: 0.2599 T12: 0.0111 REMARK 3 T13: -0.0025 T23: -0.0317 REMARK 3 L TENSOR REMARK 3 L11: 0.0439 L22: 0.0300 REMARK 3 L33: 0.0200 L12: 0.0024 REMARK 3 L13: 0.0219 L23: -0.0206 REMARK 3 S TENSOR REMARK 3 S11: 0.1882 S12: -0.0223 S13: -0.0313 REMARK 3 S21: -0.1267 S22: -0.1165 S23: 0.2595 REMARK 3 S31: 0.1146 S32: -0.0463 S33: 0.0001 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 138 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2997 1.0760 43.5140 REMARK 3 T TENSOR REMARK 3 T11: 0.1973 T22: 0.1702 REMARK 3 T33: 0.2110 T12: 0.0300 REMARK 3 T13: -0.0013 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 0.0261 L22: 0.0357 REMARK 3 L33: 0.0116 L12: -0.0191 REMARK 3 L13: 0.0200 L23: -0.0133 REMARK 3 S TENSOR REMARK 3 S11: 0.0217 S12: -0.0282 S13: 0.0057 REMARK 3 S21: 0.0345 S22: -0.0513 S23: -0.0725 REMARK 3 S31: -0.0446 S32: -0.0457 S33: 0.0000 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 152 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.9376 3.3436 37.2458 REMARK 3 T TENSOR REMARK 3 T11: 0.1922 T22: 0.1651 REMARK 3 T33: 0.2713 T12: 0.0512 REMARK 3 T13: 0.0366 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.1562 L22: 0.0932 REMARK 3 L33: 0.1112 L12: 0.0877 REMARK 3 L13: 0.1178 L23: 0.0849 REMARK 3 S TENSOR REMARK 3 S11: 0.0388 S12: -0.0026 S13: -0.0025 REMARK 3 S21: -0.1214 S22: -0.0938 S23: -0.2614 REMARK 3 S31: 0.2147 S32: 0.0130 S33: 0.0054 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6D5E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000234020. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 152589 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 16.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.02900 REMARK 200 FOR THE DATA SET : 24.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4NYI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 2.0 M SODIUM REMARK 280 FORMATE, PH 4.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 91.80650 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 91.80650 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 89.58900 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 91.80650 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 91.80650 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 89.58900 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 91.80650 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 91.80650 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 89.58900 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 91.80650 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 91.80650 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 89.58900 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 91.80650 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 91.80650 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 89.58900 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 91.80650 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 91.80650 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 89.58900 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 91.80650 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 91.80650 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 89.58900 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 91.80650 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 91.80650 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 89.58900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2787 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASN B 591 REMARK 465 MET B 592 REMARK 465 GLN B 593 REMARK 465 PRO B 594 REMARK 465 LYS B 595 REMARK 465 ALA B 596 REMARK 465 ARG B 744 REMARK 465 ASP B 745 REMARK 465 ASN B 746 REMARK 465 GLY B 747 REMARK 465 PRO B 748 REMARK 465 GLY B 749 REMARK 465 HIS B 750 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 GOL B 2009 O HOH B 2101 1.60 REMARK 500 O HOH B 2481 O HOH B 2661 1.82 REMARK 500 O HOH A 441 O HOH A 448 1.85 REMARK 500 O HOH B 2319 O HOH B 2618 1.87 REMARK 500 O HOH B 2218 O HOH B 2224 1.88 REMARK 500 OD1 ASP B 620 O HOH B 2102 1.88 REMARK 500 O HOH A 363 O HOH A 457 1.89 REMARK 500 O HOH C 1024 O HOH C 1068 1.90 REMARK 500 O HOH C 972 O HOH C 994 1.92 REMARK 500 O HOH B 2112 O HOH B 2567 1.92 REMARK 500 O HOH B 2297 O HOH B 2626 1.94 REMARK 500 O HOH A 422 O HOH A 423 1.94 REMARK 500 O HOH B 2538 O HOH B 2591 1.95 REMARK 500 O HOH C 1022 O HOH C 1091 1.95 REMARK 500 O HOH B 2754 O HOH B 2777 1.96 REMARK 500 O HOH C 1056 O HOH C 1065 1.97 REMARK 500 O HOH B 2578 O HOH B 2656 1.98 REMARK 500 O HOH B 2192 O HOH B 2621 2.00 REMARK 500 NE2 GLN A 165 O HOH A 301 2.00 REMARK 500 OE1 GLN A 129 O HOH A 302 2.00 REMARK 500 O HOH B 2236 O HOH B 2288 2.01 REMARK 500 O HOH C 1056 O HOH C 1078 2.02 REMARK 500 O HOH A 325 O HOH A 427 2.02 REMARK 500 O HOH C 958 O HOH C 1037 2.04 REMARK 500 O HOH B 2413 O HOH B 2737 2.04 REMARK 500 OE2 GLU B 909 O HOH B 2103 2.05 REMARK 500 OE1 GLU B 903 O HOH B 2104 2.06 REMARK 500 O HOH B 2757 O HOH B 2786 2.06 REMARK 500 OXT ARG B 1046 O HOH B 2105 2.07 REMARK 500 O HOH B 2686 O HOH B 2755 2.10 REMARK 500 O HOH B 2118 O HOH B 2466 2.11 REMARK 500 O HOH A 349 O HOH A 434 2.11 REMARK 500 O HOH A 398 O HOH A 438 2.12 REMARK 500 O HOH B 2701 O HOH B 2769 2.13 REMARK 500 O HOH B 2668 O HOH B 2738 2.13 REMARK 500 O HOH B 2742 O HOH B 2756 2.14 REMARK 500 NZ LYS B 740 O HOH B 2106 2.14 REMARK 500 O HOH A 338 O HOH B 2605 2.15 REMARK 500 O HOH C 1049 O HOH C 1076 2.15 REMARK 500 O HOH A 460 O HOH B 2613 2.16 REMARK 500 OD CSO A 51 NH2 ARG A 164 2.17 REMARK 500 O HOH A 416 O HOH B 2643 2.17 REMARK 500 O HOH B 2703 O HOH B 2731 2.17 REMARK 500 NZ LYS B 988 O HOH B 2107 2.18 REMARK 500 O HOH A 303 O HOH A 449 2.18 REMARK 500 O HOH C 1065 O HOH C 1070 2.19 REMARK 500 O HOH B 2548 O HOH B 2729 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2248 O HOH C 1033 3555 1.97 REMARK 500 O HOH B 2480 O HOH B 2644 4555 1.97 REMARK 500 O HOH B 2735 O HOH B 2789 7556 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 36 -63.56 -100.50 REMARK 500 LYS A 117 35.12 70.02 REMARK 500 ARG A 149 -6.63 81.51 REMARK 500 HIS B 764 -115.77 -123.66 REMARK 500 HIS B 770 63.52 -103.55 REMARK 500 ASN C 26 101.88 -48.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN C 25 ASN C 26 144.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 83.5 REMARK 620 3 GNP A 201 O1G 173.0 89.5 REMARK 620 4 GNP A 201 O1B 93.1 174.9 93.9 REMARK 620 5 HOH A 311 O 85.5 90.6 93.4 93.0 REMARK 620 6 HOH A 371 O 88.1 88.0 92.9 88.1 173.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR C 124 OG1 REMARK 620 2 HOH C1052 O 137.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FVG B 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 2007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 2008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 2009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 2010 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2011 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 203 DBREF 6D5E A 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 6D5E B 566 1046 UNP Q07889 SOS1_HUMAN 566 1046 DBREF 6D5E C 1 166 UNP P01112 RASH_HUMAN 1 166 SEQADV 6D5E GLY A 0 UNP P01112 EXPRESSION TAG SEQADV 6D5E ALA A 64 UNP P01112 TYR 64 CONFLICT SEQADV 6D5E GLY B 565 UNP Q07889 EXPRESSION TAG SEQADV 6D5E GLY C 0 UNP P01112 EXPRESSION TAG SEQRES 1 A 167 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 A 167 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 167 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 167 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CSO SEQRES 5 A 167 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU ALA SEQRES 6 A 167 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 167 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 167 GLU ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 167 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 167 LYS CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN SEQRES 11 A 167 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE SEQRES 12 A 167 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA SEQRES 13 A 167 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN HIS SEQRES 1 B 482 GLY GLN MET ARG LEU PRO SER ALA ASP VAL TYR ARG PHE SEQRES 2 B 482 ALA GLU PRO ASP SER GLU GLU ASN ILE ILE PHE GLU GLU SEQRES 3 B 482 ASN MET GLN PRO LYS ALA GLY ILE PRO ILE ILE LYS ALA SEQRES 4 B 482 GLY THR VAL ILE LYS LEU ILE GLU ARG LEU THR TYR HIS SEQRES 5 B 482 MET TYR ALA ASP PRO ASN PHE VAL ARG THR PHE LEU THR SEQRES 6 B 482 THR TYR ARG SER PHE CYS LYS PRO GLN GLU LEU LEU SER SEQRES 7 B 482 LEU ILE ILE GLU ARG PHE GLU ILE PRO GLU PRO GLU PRO SEQRES 8 B 482 THR GLU ALA ASP ARG ILE ALA ILE GLU ASN GLY ASP GLN SEQRES 9 B 482 PRO LEU SER ALA GLU LEU LYS ARG PHE ARG LYS GLU TYR SEQRES 10 B 482 ILE GLN PRO VAL GLN LEU ARG VAL LEU ASN VAL CYS ARG SEQRES 11 B 482 HIS TRP VAL GLU HIS HIS PHE TYR ASP PHE GLU ARG ASP SEQRES 12 B 482 ALA TYR LEU LEU GLN ARG MET GLU GLU PHE ILE GLY THR SEQRES 13 B 482 VAL ARG GLY LYS ALA MET LYS LYS TRP VAL GLU SER ILE SEQRES 14 B 482 THR LYS ILE ILE GLN ARG LYS LYS ILE ALA ARG ASP ASN SEQRES 15 B 482 GLY PRO GLY HIS ASN ILE THR PHE GLN SER SER PRO PRO SEQRES 16 B 482 THR VAL GLU TRP HIS ILE SER ARG PRO GLY HIS ILE GLU SEQRES 17 B 482 THR PHE ASP LEU LEU THR LEU HIS PRO ILE GLU ILE ALA SEQRES 18 B 482 ARG GLN LEU THR LEU LEU GLU SER ASP LEU TYR ARG ALA SEQRES 19 B 482 VAL GLN PRO SER GLU LEU VAL GLY SER VAL TRP THR LYS SEQRES 20 B 482 GLU ASP LYS GLU ILE ASN SER PRO ASN LEU LEU LYS MET SEQRES 21 B 482 ILE ARG HIS THR THR ASN LEU THR LEU TRP PHE GLU LYS SEQRES 22 B 482 CYS ILE VAL GLU THR GLU ASN LEU GLU GLU ARG VAL ALA SEQRES 23 B 482 VAL VAL SER ARG ILE ILE GLU ILE LEU GLN VAL PHE GLN SEQRES 24 B 482 GLU LEU ASN ASN PHE ASN GLY VAL LEU GLU VAL VAL SER SEQRES 25 B 482 ALA MET ASN SER SER PRO VAL TYR ARG LEU ASP HIS THR SEQRES 26 B 482 PHE GLU GLN ILE PRO SER ARG GLN LYS LYS ILE LEU GLU SEQRES 27 B 482 GLU ALA HIS GLU LEU SER GLU ASP HIS TYR LYS LYS TYR SEQRES 28 B 482 LEU ALA LYS LEU ARG SER ILE ASN PRO PRO CYS VAL PRO SEQRES 29 B 482 PHE PHE GLY ILE TYR LEU THR ASN ILE LEU LYS THR GLU SEQRES 30 B 482 GLU GLY ASN PRO GLU VAL LEU LYS ARG HIS GLY LYS GLU SEQRES 31 B 482 LEU ILE ASN PHE SER LYS ARG ARG LYS VAL ALA GLU ILE SEQRES 32 B 482 THR GLY GLU ILE GLN GLN TYR GLN ASN GLN PRO TYR CYS SEQRES 33 B 482 LEU ARG VAL GLU SER ASP ILE LYS ARG PHE PHE GLU ASN SEQRES 34 B 482 LEU ASN PRO MET GLY ASN SER MET GLU LYS GLU PHE THR SEQRES 35 B 482 ASP TYR LEU PHE ASN LYS SER LEU GLU ILE GLU PRO ARG SEQRES 36 B 482 ASN PRO LYS PRO LEU PRO ARG PHE PRO LYS LYS TYR SER SEQRES 37 B 482 TYR PRO LEU LYS SER PRO GLY VAL ARG PRO SER ASN PRO SEQRES 38 B 482 ARG SEQRES 1 C 167 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 C 167 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 C 167 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 C 167 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 C 167 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 C 167 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 C 167 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 C 167 GLU ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 C 167 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 C 167 LYS CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN SEQRES 11 C 167 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE SEQRES 12 C 167 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA SEQRES 13 C 167 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN HIS MODRES 6D5E CSO A 51 CYS MODIFIED RESIDUE HET CSO A 51 7 HET GNP A 201 32 HET MG A 202 1 HET CL A 203 1 HET FVG B2001 33 HET FMT B2002 3 HET FMT B2003 3 HET FMT B2004 3 HET FMT B2005 3 HET FMT B2006 3 HET GOL B2007 6 HET GOL B2008 6 HET GOL B2009 6 HET CL B2010 1 HET FMT B2011 3 HET CL C 201 1 HET CL C 202 1 HET NA C 203 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM FVG 1-[(2S)-1-{6-CHLORO-1-[(4-FLUORO-3,5-DIMETHYLPHENYL) HETNAM 2 FVG METHYL]-2-(PIPERAZIN-1-YL)-1H-BENZIMIDAZOL-4- HETNAM 3 FVG YL}PYRROLIDIN-2-YL]METHANAMINE HETNAM FMT FORMIC ACID HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSO C3 H7 N O3 S FORMUL 4 GNP C10 H17 N6 O13 P3 FORMUL 5 MG MG 2+ FORMUL 6 CL 4(CL 1-) FORMUL 7 FVG C25 H32 CL F N6 FORMUL 8 FMT 6(C H2 O2) FORMUL 13 GOL 3(C3 H8 O3) FORMUL 20 NA NA 1+ FORMUL 21 HOH *1050(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 GLN A 61 SER A 65 5 5 HELIX 3 AA3 ARG A 68 GLY A 75 1 8 HELIX 4 AA4 ASN A 86 ASP A 92 1 7 HELIX 5 AA5 ASP A 92 ASP A 105 1 14 HELIX 6 AA6 GLU A 126 GLY A 138 1 13 HELIX 7 AA7 GLY A 151 GLN A 165 1 15 HELIX 8 AA8 TYR B 575 GLU B 579 5 5 HELIX 9 AA9 THR B 605 THR B 614 1 10 HELIX 10 AB1 ASP B 620 TYR B 631 1 12 HELIX 11 AB2 ARG B 632 PHE B 634 5 3 HELIX 12 AB3 LYS B 636 GLU B 649 1 14 HELIX 13 AB4 THR B 656 ASN B 665 1 10 HELIX 14 AB5 SER B 671 TYR B 681 1 11 HELIX 15 AB6 TYR B 681 HIS B 700 1 20 HELIX 16 AB7 PHE B 701 ARG B 706 1 6 HELIX 17 AB8 ASP B 707 THR B 720 1 14 HELIX 18 AB9 MET B 726 ILE B 742 1 17 HELIX 19 AC1 HIS B 770 PHE B 774 5 5 HELIX 20 AC2 HIS B 780 ALA B 798 1 19 HELIX 21 AC3 GLN B 800 LYS B 811 5 12 HELIX 22 AC4 ASP B 813 SER B 818 1 6 HELIX 23 AC5 SER B 818 GLU B 841 1 24 HELIX 24 AC6 ASN B 844 LEU B 865 1 22 HELIX 25 AC7 ASN B 867 ASN B 879 1 13 HELIX 26 AC8 SER B 880 ARG B 885 1 6 HELIX 27 AC9 LEU B 886 ILE B 893 1 8 HELIX 28 AD1 PRO B 894 LEU B 907 1 14 HELIX 29 AD2 SER B 908 ARG B 920 1 13 HELIX 30 AD3 PHE B 930 ASN B 944 1 15 HELIX 31 AD4 PHE B 958 GLN B 975 1 18 HELIX 32 AD5 GLU B 984 ASN B 993 1 10 HELIX 33 AD6 MET B 1001 GLU B 1017 1 17 HELIX 34 AD7 SER C 17 GLN C 25 1 9 HELIX 35 AD8 TYR C 64 ALA C 66 5 3 HELIX 36 AD9 MET C 67 ARG C 73 1 7 HELIX 37 AE1 ASN C 86 ASP C 92 1 7 HELIX 38 AE2 ASP C 92 ASP C 105 1 14 HELIX 39 AE3 GLU C 126 GLY C 138 1 13 HELIX 40 AE4 GLY C 151 GLN C 165 1 15 SHEET 1 AA1 6 GLU A 37 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 THR A 58 -1 O LEU A 53 N LYS A 42 SHEET 3 AA1 6 THR A 2 GLY A 10 1 N TYR A 4 O ASP A 54 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 4 ILE B 586 PHE B 588 0 SHEET 2 AA2 4 ILE B 601 GLY B 604 -1 O ALA B 603 N ILE B 587 SHEET 3 AA2 4 LYS B 953 ASN B 957 -1 O ILE B 956 N GLY B 604 SHEET 4 AA2 4 VAL B 947 ARG B 950 -1 N LEU B 948 O LEU B 955 SHEET 1 AA3 6 ARG C 41 ILE C 46 0 SHEET 2 AA3 6 GLU C 49 ASP C 57 -1 O LEU C 53 N LYS C 42 SHEET 3 AA3 6 THR C 2 GLY C 10 1 N LEU C 6 O LEU C 56 SHEET 4 AA3 6 GLY C 77 ALA C 83 1 O VAL C 81 N VAL C 9 SHEET 5 AA3 6 MET C 111 LYS C 117 1 O ASN C 116 N PHE C 82 SHEET 6 AA3 6 TYR C 141 SER C 145 1 O THR C 144 N LYS C 117 LINK C THR A 50 N CSO A 51 1555 1555 1.32 LINK C CSO A 51 N LEU A 52 1555 1555 1.32 LINK OG SER A 17 MG MG A 202 1555 1555 2.06 LINK OG1 THR A 35 MG MG A 202 1555 1555 2.07 LINK O1G GNP A 201 MG MG A 202 1555 1555 2.00 LINK O1B GNP A 201 MG MG A 202 1555 1555 2.06 LINK MG MG A 202 O HOH A 311 1555 1555 2.08 LINK MG MG A 202 O HOH A 371 1555 1555 2.10 LINK OG1 THR C 124 NA NA C 203 1555 1555 3.14 LINK NA NA C 203 O HOH C1052 1555 1555 2.36 CISPEP 1 PRO B 924 PRO B 925 0 12.50 CISPEP 2 ASN B 1020 PRO B 1021 0 5.06 SITE 1 AC1 30 GLY A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC1 30 LYS A 16 SER A 17 ALA A 18 PHE A 28 SITE 3 AC1 30 VAL A 29 ASP A 30 GLU A 31 TYR A 32 SITE 4 AC1 30 PRO A 34 THR A 35 GLY A 60 GLN A 61 SITE 5 AC1 30 ASN A 116 LYS A 117 ASP A 119 LEU A 120 SITE 6 AC1 30 SER A 145 ALA A 146 LYS A 147 MG A 202 SITE 7 AC1 30 HOH A 311 HOH A 326 HOH A 356 HOH A 364 SITE 8 AC1 30 HOH A 371 HOH A 396 SITE 1 AC2 5 SER A 17 THR A 35 GNP A 201 HOH A 311 SITE 2 AC2 5 HOH A 371 SITE 1 AC3 2 ARG A 41 ASN B 976 SITE 1 AC4 14 VAL B 852 MET B 878 ASN B 879 VAL B 883 SITE 2 AC4 14 TYR B 884 ASP B 887 PHE B 890 ILE B 893 SITE 3 AC4 14 LEU B 901 HIS B 905 GOL B2009 FMT B2011 SITE 4 AC4 14 HOH B2257 HOH B2548 SITE 1 AC5 4 MET B 567 HIS B 616 MET B 617 HOH B2161 SITE 1 AC6 3 ARG A 128 ARG B 767 PRO B 768 SITE 1 AC7 7 GLU A 37 MET A 67 GLN A 70 ALA B 619 SITE 2 AC7 7 ARG B 688 HOH B2133 HOH B2181 SITE 1 AC8 6 TYR B 615 HIS B 616 ARG B 647 TYR B 681 SITE 2 AC8 6 VAL B 685 HOH B2226 SITE 1 AC9 1 TYR B1031 SITE 1 AD1 5 ARG B 786 GLU B 864 VAL B1040 HOH B2113 SITE 2 AD1 5 HOH B2251 SITE 1 AD2 5 SER B 793 ASP B 794 PRO B 978 TYR B 979 SITE 2 AD2 5 HOH B2276 SITE 1 AD3 5 PHE B 890 LYS B 898 FVG B2001 HOH B2101 SITE 2 AD3 5 HOH B2116 SITE 1 AD4 3 LYS B 837 PRO B 996 HOH B2648 SITE 1 AD5 7 ASN B 879 HIS B 905 FVG B2001 HOH B2175 SITE 2 AD5 7 HOH B2206 HOH B2329 ARG C 73 SITE 1 AD6 2 VAL C 45 ASP C 47 SITE 1 AD7 6 LYS B 939 HOH B2128 ILE C 55 LEU C 56 SITE 2 AD7 6 ASP C 57 HOH C1010 SITE 1 AD8 5 ASN C 85 ASN C 86 THR C 87 THR C 124 SITE 2 AD8 5 HOH C1052 CRYST1 183.613 183.613 179.178 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005446 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005446 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005581 0.00000