HEADER SIGNALING PROTEIN 19-APR-18 6D5J TITLE RAS:SOS:RAS IN COMPLEX WITH A SMALL MOLECULE ACTIVATOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H-RAS-1,HA-RAS,TRANSFORMING PROTEIN P21,C-H-RAS,P21RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SON OF SEVENLESS HOMOLOG 1; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: SOS-1; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: GTPASE HRAS; COMPND 14 CHAIN: C; COMPND 15 SYNONYM: H-RAS-1,HA-RAS,TRANSFORMING PROTEIN P21,C-H-RAS,P21RAS; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: SOS1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: HRAS, HRAS1; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RAS, SOS, ONCOPROTEIN, PROTEIN-PROTEIN COMPLEX, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.PHAN,T.HODGES,S.W.FESIK REVDAT 4 15-NOV-23 6D5J 1 REMARK REVDAT 3 04-OCT-23 6D5J 1 LINK REVDAT 2 07-NOV-18 6D5J 1 JRNL REVDAT 1 19-SEP-18 6D5J 0 JRNL AUTH T.R.HODGES,J.R.ABBOTT,A.J.LITTLE,D.SARKAR,J.M.SALOVICH, JRNL AUTH 2 J.E.HOWES,D.T.AKAN,J.SAI,A.L.ARNOLD,C.BROWNING,M.C.BURNS, JRNL AUTH 3 T.SOBOLIK,Q.SUN,Y.BEESETTY,J.A.COKER,D.SCHARN, JRNL AUTH 4 H.STADTMUELLER,O.W.ROSSANESE,J.PHAN,A.G.WATERSON, JRNL AUTH 5 D.B.MCCONNELL,S.W.FESIK JRNL TITL DISCOVERY AND STRUCTURE-BASED OPTIMIZATION OF JRNL TITL 2 BENZIMIDAZOLE-DERIVED ACTIVATORS OF SOS1-MEDIATED NUCLEOTIDE JRNL TITL 3 EXCHANGE ON RAS. JRNL REF J. MED. CHEM. V. 61 8875 2018 JRNL REFN ISSN 1520-4804 JRNL PMID 30205005 JRNL DOI 10.1021/ACS.JMEDCHEM.8B01108 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.C.BURNS,Q.SUN,R.N.DANIELS,D.CAMPER,J.P.KENNEDY,J.PHAN, REMARK 1 AUTH 2 E.T.OLEJNICZAK,T.LEE,A.G.WATERSON,O.W.ROSSANESE,S.W.FESIK REMARK 1 TITL APPROACH FOR TARGETING RAS WITH SMALL MOLECULES THAT REMARK 1 TITL 2 ACTIVATE SOS-MEDIATED NUCLEOTIDE EXCHANGE. REMARK 1 REF PROC. NATL. ACAD. SCI. V. 111 3401 2014 REMARK 1 REF 2 U.S.A. REMARK 1 REFN ESSN 1091-6490 REMARK 1 PMID 24550516 REMARK 1 DOI 10.1073/PNAS.1315798111 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2875: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 151875 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.320 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7367 - 4.2189 1.00 11174 150 0.1475 0.1667 REMARK 3 2 4.2189 - 3.3489 1.00 10840 150 0.1344 0.1308 REMARK 3 3 3.3489 - 2.9256 1.00 10781 136 0.1548 0.1778 REMARK 3 4 2.9256 - 2.6582 1.00 10744 145 0.1658 0.1748 REMARK 3 5 2.6582 - 2.4676 1.00 10687 141 0.1594 0.1901 REMARK 3 6 2.4676 - 2.3222 1.00 10689 142 0.1574 0.2038 REMARK 3 7 2.3222 - 2.2059 1.00 10682 141 0.1574 0.1650 REMARK 3 8 2.2059 - 2.1098 1.00 10627 146 0.1558 0.1766 REMARK 3 9 2.1098 - 2.0286 1.00 10641 138 0.1625 0.1871 REMARK 3 10 2.0286 - 1.9586 1.00 10651 141 0.1686 0.1803 REMARK 3 11 1.9586 - 1.8974 1.00 10611 145 0.1747 0.2142 REMARK 3 12 1.8974 - 1.8431 1.00 10616 140 0.1921 0.1935 REMARK 3 13 1.8431 - 1.7946 1.00 10609 146 0.2101 0.2614 REMARK 3 14 1.7946 - 1.7508 0.99 10525 137 0.2339 0.2796 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5628 50.1082 62.4133 REMARK 3 T TENSOR REMARK 3 T11: 0.1407 T22: 0.1605 REMARK 3 T33: 0.1602 T12: -0.0322 REMARK 3 T13: 0.0135 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.0932 L22: 0.1166 REMARK 3 L33: 0.2219 L12: 0.0720 REMARK 3 L13: 0.0960 L23: 0.1080 REMARK 3 S TENSOR REMARK 3 S11: 0.0193 S12: 0.0033 S13: -0.0179 REMARK 3 S21: -0.0176 S22: 0.0085 S23: 0.1002 REMARK 3 S31: 0.0936 S32: -0.0694 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1755 44.9950 56.8628 REMARK 3 T TENSOR REMARK 3 T11: 0.1693 T22: 0.1967 REMARK 3 T33: 0.1543 T12: -0.0435 REMARK 3 T13: 0.0186 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 0.0727 L22: 0.0218 REMARK 3 L33: 0.1129 L12: 0.0056 REMARK 3 L13: 0.1139 L23: 0.0077 REMARK 3 S TENSOR REMARK 3 S11: 0.0172 S12: -0.1772 S13: -0.0395 REMARK 3 S21: 0.0846 S22: -0.0173 S23: -0.0465 REMARK 3 S31: -0.1057 S32: 0.1607 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0397 45.9417 73.3803 REMARK 3 T TENSOR REMARK 3 T11: 0.2437 T22: 0.2294 REMARK 3 T33: 0.1746 T12: -0.0499 REMARK 3 T13: 0.0196 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.0533 L22: 0.0202 REMARK 3 L33: 0.0540 L12: 0.0202 REMARK 3 L13: 0.0625 L23: 0.0212 REMARK 3 S TENSOR REMARK 3 S11: -0.0090 S12: -0.1528 S13: -0.2051 REMARK 3 S21: 0.2238 S22: -0.0506 S23: 0.0688 REMARK 3 S31: 0.2909 S32: -0.0461 S33: 0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.1859 56.9992 74.5854 REMARK 3 T TENSOR REMARK 3 T11: 0.1838 T22: 0.1909 REMARK 3 T33: 0.1498 T12: -0.0466 REMARK 3 T13: 0.0185 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 0.1178 L22: 0.1277 REMARK 3 L33: 0.0542 L12: 0.1064 REMARK 3 L13: -0.0248 L23: 0.0008 REMARK 3 S TENSOR REMARK 3 S11: 0.0998 S12: -0.2152 S13: 0.1306 REMARK 3 S21: 0.1378 S22: -0.0456 S23: 0.0273 REMARK 3 S31: -0.0492 S32: 0.0565 S33: 0.0018 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6562 65.9407 65.7614 REMARK 3 T TENSOR REMARK 3 T11: 0.1862 T22: 0.1416 REMARK 3 T33: 0.2199 T12: -0.0258 REMARK 3 T13: 0.0229 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 0.1308 L22: 0.1696 REMARK 3 L33: 0.1000 L12: 0.2190 REMARK 3 L13: -0.1214 L23: -0.1448 REMARK 3 S TENSOR REMARK 3 S11: 0.0422 S12: 0.0141 S13: 0.2125 REMARK 3 S21: -0.0483 S22: -0.0350 S23: 0.1083 REMARK 3 S31: -0.1452 S32: 0.0828 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5575 54.0043 60.8039 REMARK 3 T TENSOR REMARK 3 T11: 0.1812 T22: 0.2006 REMARK 3 T33: 0.1633 T12: -0.0620 REMARK 3 T13: 0.0056 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.0340 L22: 0.0484 REMARK 3 L33: 0.0581 L12: -0.0400 REMARK 3 L13: -0.0301 L23: -0.0152 REMARK 3 S TENSOR REMARK 3 S11: 0.1137 S12: 0.0606 S13: 0.0911 REMARK 3 S21: 0.0449 S22: -0.1449 S23: -0.1190 REMARK 3 S31: -0.1189 S32: 0.2486 S33: -0.0009 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 565 THROUGH 723 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8602 31.0028 78.0200 REMARK 3 T TENSOR REMARK 3 T11: 0.1145 T22: 0.1259 REMARK 3 T33: 0.1083 T12: -0.0260 REMARK 3 T13: -0.0000 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.1241 L22: 0.2558 REMARK 3 L33: 0.7399 L12: -0.1435 REMARK 3 L13: -0.2837 L23: 0.1370 REMARK 3 S TENSOR REMARK 3 S11: -0.0172 S12: -0.0058 S13: 0.0169 REMARK 3 S21: 0.0233 S22: 0.0022 S23: 0.0149 REMARK 3 S31: 0.0035 S32: 0.0471 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 724 THROUGH 768 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5330 49.2826 52.6003 REMARK 3 T TENSOR REMARK 3 T11: 0.1743 T22: 0.1832 REMARK 3 T33: 0.1831 T12: -0.0266 REMARK 3 T13: 0.0017 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.0335 L22: 0.2204 REMARK 3 L33: 0.1152 L12: -0.0161 REMARK 3 L13: -0.0095 L23: 0.1137 REMARK 3 S TENSOR REMARK 3 S11: 0.1473 S12: 0.0134 S13: 0.0849 REMARK 3 S21: 0.0806 S22: 0.0551 S23: 0.1032 REMARK 3 S31: -0.3348 S32: -0.0690 S33: -0.0002 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 769 THROUGH 1046 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3859 33.5444 33.0585 REMARK 3 T TENSOR REMARK 3 T11: 0.0735 T22: 0.0797 REMARK 3 T33: 0.0815 T12: -0.0275 REMARK 3 T13: 0.0091 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.1906 L22: 0.2728 REMARK 3 L33: 0.7461 L12: 0.0344 REMARK 3 L13: -0.1260 L23: -0.1876 REMARK 3 S TENSOR REMARK 3 S11: -0.0425 S12: 0.0235 S13: -0.0080 REMARK 3 S21: -0.0205 S22: 0.0285 S23: -0.0157 REMARK 3 S31: 0.0174 S32: 0.0155 S33: -0.0079 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 0 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.4891 12.0378 41.9284 REMARK 3 T TENSOR REMARK 3 T11: 0.1489 T22: 0.1453 REMARK 3 T33: 0.2327 T12: 0.0165 REMARK 3 T13: 0.0056 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.0014 L22: 0.1501 REMARK 3 L33: 0.0755 L12: -0.0294 REMARK 3 L13: 0.0324 L23: -0.0941 REMARK 3 S TENSOR REMARK 3 S11: -0.0580 S12: -0.0027 S13: 0.1619 REMARK 3 S21: 0.1029 S22: 0.0271 S23: -0.1727 REMARK 3 S31: 0.0256 S32: 0.0180 S33: -0.0009 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 25 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1466 12.5537 55.9489 REMARK 3 T TENSOR REMARK 3 T11: 0.4033 T22: 0.1937 REMARK 3 T33: 0.5327 T12: 0.0113 REMARK 3 T13: -0.1296 T23: 0.0920 REMARK 3 L TENSOR REMARK 3 L11: -0.0065 L22: 0.0126 REMARK 3 L33: 0.0068 L12: -0.0078 REMARK 3 L13: -0.0027 L23: -0.0185 REMARK 3 S TENSOR REMARK 3 S11: 0.1382 S12: 0.0800 S13: -0.2261 REMARK 3 S21: 0.1400 S22: 0.1567 S23: 0.0195 REMARK 3 S31: 0.4173 S32: 0.0147 S33: 0.0002 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 35 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.8561 14.1925 46.1902 REMARK 3 T TENSOR REMARK 3 T11: 0.2630 T22: 0.2855 REMARK 3 T33: 0.4712 T12: 0.0569 REMARK 3 T13: -0.0928 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 0.0068 L22: 0.0096 REMARK 3 L33: 0.0208 L12: 0.0205 REMARK 3 L13: -0.0467 L23: -0.0115 REMARK 3 S TENSOR REMARK 3 S11: -0.0016 S12: -0.0519 S13: 0.0167 REMARK 3 S21: 0.0260 S22: -0.1258 S23: -0.1199 REMARK 3 S31: -0.1475 S32: 0.1540 S33: -0.0002 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 49 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3813 18.8908 36.4145 REMARK 3 T TENSOR REMARK 3 T11: 0.1281 T22: 0.1081 REMARK 3 T33: 0.2024 T12: -0.0037 REMARK 3 T13: 0.0268 T23: 0.0233 REMARK 3 L TENSOR REMARK 3 L11: 0.0818 L22: 0.2392 REMARK 3 L33: 0.3835 L12: 0.0667 REMARK 3 L13: 0.0845 L23: 0.2398 REMARK 3 S TENSOR REMARK 3 S11: -0.0833 S12: 0.0016 S13: -0.0619 REMARK 3 S21: -0.0075 S22: -0.0346 S23: -0.2116 REMARK 3 S31: -0.0020 S32: -0.0173 S33: -0.0526 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 75 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3682 8.8516 31.7718 REMARK 3 T TENSOR REMARK 3 T11: 0.1602 T22: 0.1297 REMARK 3 T33: 0.1523 T12: 0.0288 REMARK 3 T13: 0.0209 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.0217 L22: 0.3434 REMARK 3 L33: 0.0879 L12: 0.0279 REMARK 3 L13: -0.1017 L23: 0.0572 REMARK 3 S TENSOR REMARK 3 S11: 0.1024 S12: 0.0445 S13: -0.0325 REMARK 3 S21: -0.1498 S22: -0.0466 S23: 0.0383 REMARK 3 S31: 0.0022 S32: 0.0203 S33: 0.0005 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 118 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9985 -1.8453 36.6473 REMARK 3 T TENSOR REMARK 3 T11: 0.1809 T22: 0.1452 REMARK 3 T33: 0.2217 T12: 0.0121 REMARK 3 T13: 0.0114 T23: -0.0262 REMARK 3 L TENSOR REMARK 3 L11: 0.0699 L22: 0.1191 REMARK 3 L33: 0.0781 L12: -0.0671 REMARK 3 L13: 0.0667 L23: -0.0661 REMARK 3 S TENSOR REMARK 3 S11: 0.0885 S12: -0.0256 S13: -0.0329 REMARK 3 S21: -0.1172 S22: -0.0487 S23: 0.2886 REMARK 3 S31: 0.1740 S32: -0.0132 S33: 0.0133 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 138 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3517 2.3497 39.8674 REMARK 3 T TENSOR REMARK 3 T11: 0.1539 T22: 0.1262 REMARK 3 T33: 0.1980 T12: 0.0358 REMARK 3 T13: 0.0103 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.1546 L22: 0.2215 REMARK 3 L33: 0.2667 L12: -0.0323 REMARK 3 L13: 0.1714 L23: 0.0500 REMARK 3 S TENSOR REMARK 3 S11: 0.0219 S12: -0.0306 S13: -0.0059 REMARK 3 S21: -0.0214 S22: -0.0474 S23: -0.1410 REMARK 3 S31: 0.1037 S32: -0.0302 S33: 0.0123 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6D5J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000234028. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 151885 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4NYI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 2.0 M SODIUM REMARK 280 FORMATE, PH 4.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 91.81350 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 91.81350 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 89.52800 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 91.81350 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 91.81350 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 89.52800 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 91.81350 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 91.81350 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 89.52800 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 91.81350 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 91.81350 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 89.52800 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 91.81350 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 91.81350 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 89.52800 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 91.81350 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 91.81350 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 89.52800 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 91.81350 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 91.81350 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 89.52800 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 91.81350 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 91.81350 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 89.52800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2822 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASN B 591 REMARK 465 MET B 592 REMARK 465 GLN B 593 REMARK 465 PRO B 594 REMARK 465 LYS B 595 REMARK 465 ALA B 596 REMARK 465 ARG B 744 REMARK 465 ASP B 745 REMARK 465 ASN B 746 REMARK 465 GLY B 747 REMARK 465 PRO B 748 REMARK 465 GLY B 749 REMARK 465 HIS B 750 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2613 O HOH B 2731 1.82 REMARK 500 O HOH B 2168 O HOH B 2711 1.86 REMARK 500 OE1 GLN C 95 O HOH C 301 1.87 REMARK 500 O HOH C 303 O HOH C 454 1.88 REMARK 500 O HOH B 2194 O HOH B 2575 1.90 REMARK 500 O HOH A 381 O HOH A 418 1.91 REMARK 500 O HOH B 2676 O HOH B 2713 1.92 REMARK 500 OE1 GLN A 129 O HOH A 301 1.97 REMARK 500 O HOH B 2239 O HOH B 2283 1.97 REMARK 500 O HOH C 478 O HOH C 484 2.00 REMARK 500 O HOH B 2574 O HOH B 2617 2.01 REMARK 500 O HOH B 2446 O HOH B 2698 2.02 REMARK 500 OE1 GLU B 891 O HOH B 2101 2.02 REMARK 500 O HOH C 308 O HOH C 334 2.02 REMARK 500 O HOH C 411 O HOH C 515 2.03 REMARK 500 O HOH C 341 O HOH C 470 2.03 REMARK 500 O HOH A 303 O HOH A 463 2.04 REMARK 500 O HOH B 2591 O HOH B 2646 2.04 REMARK 500 NH2 ARG B 982 O HOH B 2102 2.05 REMARK 500 O HOH A 302 O HOH A 368 2.05 REMARK 500 OD CSO A 51 O HOH A 302 2.07 REMARK 500 O HOH A 393 O HOH A 468 2.08 REMARK 500 O HOH B 2206 O HOH B 2609 2.08 REMARK 500 O HOH C 331 O HOH C 389 2.08 REMARK 500 O HOH A 401 O HOH A 448 2.08 REMARK 500 O HOH A 318 O HOH A 432 2.08 REMARK 500 O HOH B 2405 O HOH B 2660 2.09 REMARK 500 O HOH B 2157 O HOH B 2741 2.10 REMARK 500 O HOH B 2667 O HOH B 2769 2.11 REMARK 500 O HOH B 2544 O HOH B 2598 2.11 REMARK 500 O HOH B 2552 O HOH B 2613 2.11 REMARK 500 O HOH A 410 O HOH A 455 2.12 REMARK 500 O2 GOL B 2008 O HOH B 2103 2.12 REMARK 500 O HOH B 2101 O HOH B 2601 2.12 REMARK 500 O HOH A 383 O HOH B 2620 2.13 REMARK 500 O HOH B 2793 O HOH B 2799 2.13 REMARK 500 O HOH A 302 O HOH A 323 2.15 REMARK 500 OD1 ASP B 620 O HOH B 2104 2.15 REMARK 500 O HOH B 2536 O HOH B 2606 2.16 REMARK 500 O HOH B 2501 O HOH B 2742 2.16 REMARK 500 O HOH B 2293 O HOH B 2388 2.17 REMARK 500 O HOH A 348 O HOH A 382 2.18 REMARK 500 O HOH B 2179 O HOH B 2631 2.18 REMARK 500 O HOH B 2464 O HOH B 2513 2.19 REMARK 500 O HOH B 2275 O HOH B 2664 2.19 REMARK 500 O HOH C 459 O HOH C 499 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2654 O HOH B 2684 7555 2.05 REMARK 500 O HOH B 2352 O HOH C 306 3555 2.07 REMARK 500 O HOH A 433 O HOH B 2347 16555 2.14 REMARK 500 O HOH B 2130 O HOH B 2255 3555 2.16 REMARK 500 O HOH B 2585 O HOH B 2650 7556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 36 -63.27 -101.38 REMARK 500 ARG A 149 -4.26 81.79 REMARK 500 HIS B 764 -119.00 -124.81 REMARK 500 HIS B 770 62.42 -103.99 REMARK 500 GLN C 25 150.27 -49.54 REMARK 500 ASN C 26 96.39 -42.94 REMARK 500 GLU C 37 119.13 -39.57 REMARK 500 ASP C 38 43.66 75.58 REMARK 500 ASP C 38 43.46 75.58 REMARK 500 TYR C 40 15.59 -140.91 REMARK 500 TYR C 40 15.59 -141.31 REMARK 500 ASP C 119 -169.98 -162.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN C 25 ASN C 26 141.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 82.4 REMARK 620 3 GNP A 201 O1G 171.1 89.1 REMARK 620 4 GNP A 201 O1B 93.2 175.5 95.4 REMARK 620 5 HOH A 312 O 85.3 87.6 91.8 92.2 REMARK 620 6 HOH A 344 O 86.5 89.0 96.0 90.6 171.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR C 87 OG1 REMARK 620 2 THR C 124 OG1 96.3 REMARK 620 3 HOH C 461 O 65.5 95.5 REMARK 620 4 HOH C 475 O 123.8 133.7 120.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FV4 B 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 2007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 2008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 202 DBREF 6D5J A 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 6D5J B 566 1046 UNP Q07889 SOS1_HUMAN 566 1046 DBREF 6D5J C 1 166 UNP P01112 RASH_HUMAN 1 166 SEQADV 6D5J GLY A 0 UNP P01112 EXPRESSION TAG SEQADV 6D5J ALA A 64 UNP P01112 TYR 64 ENGINEERED MUTATION SEQADV 6D5J GLY B 565 UNP Q07889 EXPRESSION TAG SEQADV 6D5J GLY C 0 UNP P01112 EXPRESSION TAG SEQRES 1 A 167 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 A 167 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 167 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 167 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CSO SEQRES 5 A 167 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU ALA SEQRES 6 A 167 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 167 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 167 GLU ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 167 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 167 LYS CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN SEQRES 11 A 167 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE SEQRES 12 A 167 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA SEQRES 13 A 167 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN HIS SEQRES 1 B 482 GLY GLN MET ARG LEU PRO SER ALA ASP VAL TYR ARG PHE SEQRES 2 B 482 ALA GLU PRO ASP SER GLU GLU ASN ILE ILE PHE GLU GLU SEQRES 3 B 482 ASN MET GLN PRO LYS ALA GLY ILE PRO ILE ILE LYS ALA SEQRES 4 B 482 GLY THR VAL ILE LYS LEU ILE GLU ARG LEU THR TYR HIS SEQRES 5 B 482 MET TYR ALA ASP PRO ASN PHE VAL ARG THR PHE LEU THR SEQRES 6 B 482 THR TYR ARG SER PHE CYS LYS PRO GLN GLU LEU LEU SER SEQRES 7 B 482 LEU ILE ILE GLU ARG PHE GLU ILE PRO GLU PRO GLU PRO SEQRES 8 B 482 THR GLU ALA ASP ARG ILE ALA ILE GLU ASN GLY ASP GLN SEQRES 9 B 482 PRO LEU SER ALA GLU LEU LYS ARG PHE ARG LYS GLU TYR SEQRES 10 B 482 ILE GLN PRO VAL GLN LEU ARG VAL LEU ASN VAL CYS ARG SEQRES 11 B 482 HIS TRP VAL GLU HIS HIS PHE TYR ASP PHE GLU ARG ASP SEQRES 12 B 482 ALA TYR LEU LEU GLN ARG MET GLU GLU PHE ILE GLY THR SEQRES 13 B 482 VAL ARG GLY LYS ALA MET LYS LYS TRP VAL GLU SER ILE SEQRES 14 B 482 THR LYS ILE ILE GLN ARG LYS LYS ILE ALA ARG ASP ASN SEQRES 15 B 482 GLY PRO GLY HIS ASN ILE THR PHE GLN SER SER PRO PRO SEQRES 16 B 482 THR VAL GLU TRP HIS ILE SER ARG PRO GLY HIS ILE GLU SEQRES 17 B 482 THR PHE ASP LEU LEU THR LEU HIS PRO ILE GLU ILE ALA SEQRES 18 B 482 ARG GLN LEU THR LEU LEU GLU SER ASP LEU TYR ARG ALA SEQRES 19 B 482 VAL GLN PRO SER GLU LEU VAL GLY SER VAL TRP THR LYS SEQRES 20 B 482 GLU ASP LYS GLU ILE ASN SER PRO ASN LEU LEU LYS MET SEQRES 21 B 482 ILE ARG HIS THR THR ASN LEU THR LEU TRP PHE GLU LYS SEQRES 22 B 482 CYS ILE VAL GLU THR GLU ASN LEU GLU GLU ARG VAL ALA SEQRES 23 B 482 VAL VAL SER ARG ILE ILE GLU ILE LEU GLN VAL PHE GLN SEQRES 24 B 482 GLU LEU ASN ASN PHE ASN GLY VAL LEU GLU VAL VAL SER SEQRES 25 B 482 ALA MET ASN SER SER PRO VAL TYR ARG LEU ASP HIS THR SEQRES 26 B 482 PHE GLU GLN ILE PRO SER ARG GLN LYS LYS ILE LEU GLU SEQRES 27 B 482 GLU ALA HIS GLU LEU SER GLU ASP HIS TYR LYS LYS TYR SEQRES 28 B 482 LEU ALA LYS LEU ARG SER ILE ASN PRO PRO CYS VAL PRO SEQRES 29 B 482 PHE PHE GLY ILE TYR LEU THR ASN ILE LEU LYS THR GLU SEQRES 30 B 482 GLU GLY ASN PRO GLU VAL LEU LYS ARG HIS GLY LYS GLU SEQRES 31 B 482 LEU ILE ASN PHE SER LYS ARG ARG LYS VAL ALA GLU ILE SEQRES 32 B 482 THR GLY GLU ILE GLN GLN TYR GLN ASN GLN PRO TYR CYS SEQRES 33 B 482 LEU ARG VAL GLU SER ASP ILE LYS ARG PHE PHE GLU ASN SEQRES 34 B 482 LEU ASN PRO MET GLY ASN SER MET GLU LYS GLU PHE THR SEQRES 35 B 482 ASP TYR LEU PHE ASN LYS SER LEU GLU ILE GLU PRO ARG SEQRES 36 B 482 ASN PRO LYS PRO LEU PRO ARG PHE PRO LYS LYS TYR SER SEQRES 37 B 482 TYR PRO LEU LYS SER PRO GLY VAL ARG PRO SER ASN PRO SEQRES 38 B 482 ARG SEQRES 1 C 167 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 C 167 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 C 167 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 C 167 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 C 167 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 C 167 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 C 167 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 C 167 GLU ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 C 167 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 C 167 LYS CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN SEQRES 11 C 167 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE SEQRES 12 C 167 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA SEQRES 13 C 167 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN HIS MODRES 6D5J CSO A 51 CYS MODIFIED RESIDUE HET CSO A 51 7 HET GNP A 201 32 HET MG A 202 1 HET FV4 B2001 26 HET FMT B2002 3 HET FMT B2003 3 HET FMT B2004 3 HET FMT B2005 3 HET FMT B2006 3 HET GOL B2007 6 HET GOL B2008 6 HET FMT C 201 3 HET NA C 202 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM FV4 6-CHLORO-1-[(4-FLUORO-3,5-DIMETHYLPHENYL)METHYL]-2- HETNAM 2 FV4 (PIPERAZIN-1-YL)-1H-BENZIMIDAZOLE HETNAM FMT FORMIC ACID HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSO C3 H7 N O3 S FORMUL 4 GNP C10 H17 N6 O13 P3 FORMUL 5 MG MG 2+ FORMUL 6 FV4 C20 H22 CL F N4 FORMUL 7 FMT 6(C H2 O2) FORMUL 12 GOL 2(C3 H8 O3) FORMUL 15 NA NA 1+ FORMUL 16 HOH *1121(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 GLN A 61 SER A 65 5 5 HELIX 3 AA3 ARG A 68 GLY A 75 1 8 HELIX 4 AA4 ASN A 86 ASP A 92 1 7 HELIX 5 AA5 ASP A 92 ASP A 105 1 14 HELIX 6 AA6 GLU A 126 GLY A 138 1 13 HELIX 7 AA7 GLY A 151 GLN A 165 1 15 HELIX 8 AA8 TYR B 575 GLU B 579 5 5 HELIX 9 AA9 THR B 605 THR B 614 1 10 HELIX 10 AB1 ASP B 620 TYR B 631 1 12 HELIX 11 AB2 ARG B 632 PHE B 634 5 3 HELIX 12 AB3 LYS B 636 GLU B 649 1 14 HELIX 13 AB4 THR B 656 ASN B 665 1 10 HELIX 14 AB5 SER B 671 TYR B 681 1 11 HELIX 15 AB6 TYR B 681 HIS B 700 1 20 HELIX 16 AB7 PHE B 701 ARG B 706 1 6 HELIX 17 AB8 ASP B 707 THR B 720 1 14 HELIX 18 AB9 MET B 726 ALA B 743 1 18 HELIX 19 AC1 HIS B 770 PHE B 774 5 5 HELIX 20 AC2 HIS B 780 ALA B 798 1 19 HELIX 21 AC3 GLN B 800 LYS B 811 5 12 HELIX 22 AC4 ASP B 813 SER B 818 1 6 HELIX 23 AC5 SER B 818 GLU B 841 1 24 HELIX 24 AC6 ASN B 844 LEU B 865 1 22 HELIX 25 AC7 ASN B 867 ASN B 879 1 13 HELIX 26 AC8 SER B 880 ARG B 885 1 6 HELIX 27 AC9 LEU B 886 ILE B 893 1 8 HELIX 28 AD1 PRO B 894 ARG B 920 1 27 HELIX 29 AD2 PHE B 930 GLY B 943 1 14 HELIX 30 AD3 PHE B 958 GLN B 975 1 18 HELIX 31 AD4 GLU B 984 ASN B 993 1 10 HELIX 32 AD5 MET B 1001 GLU B 1017 1 17 HELIX 33 AD6 SER C 17 GLN C 25 1 9 HELIX 34 AD7 TYR C 64 ALA C 66 5 3 HELIX 35 AD8 MET C 67 THR C 74 1 8 HELIX 36 AD9 ASN C 86 ASP C 92 1 7 HELIX 37 AE1 ASP C 92 ASP C 105 1 14 HELIX 38 AE2 GLU C 126 GLY C 138 1 13 HELIX 39 AE3 GLY C 151 GLN C 165 1 15 SHEET 1 AA1 6 GLU A 37 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 THR A 58 -1 O LEU A 53 N LYS A 42 SHEET 3 AA1 6 THR A 2 GLY A 10 1 N TYR A 4 O ASP A 54 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 4 ILE B 586 PHE B 588 0 SHEET 2 AA2 4 ILE B 601 GLY B 604 -1 O ALA B 603 N ILE B 587 SHEET 3 AA2 4 LYS B 953 ASN B 957 -1 O ILE B 956 N GLY B 604 SHEET 4 AA2 4 VAL B 947 ARG B 950 -1 N LEU B 948 O LEU B 955 SHEET 1 AA3 6 ARG C 41 ILE C 46 0 SHEET 2 AA3 6 GLU C 49 ASP C 57 -1 O LEU C 53 N LYS C 42 SHEET 3 AA3 6 THR C 2 GLY C 10 1 N LEU C 6 O LEU C 56 SHEET 4 AA3 6 GLY C 77 ALA C 83 1 O VAL C 81 N VAL C 9 SHEET 5 AA3 6 MET C 111 LYS C 117 1 O ASN C 116 N PHE C 82 SHEET 6 AA3 6 TYR C 141 SER C 145 1 O THR C 144 N LYS C 117 LINK C THR A 50 N CSO A 51 1555 1555 1.33 LINK C CSO A 51 N LEU A 52 1555 1555 1.32 LINK OG SER A 17 MG MG A 202 1555 1555 2.05 LINK OG1 THR A 35 MG MG A 202 1555 1555 2.02 LINK O1G GNP A 201 MG MG A 202 1555 1555 2.02 LINK O1B GNP A 201 MG MG A 202 1555 1555 2.02 LINK MG MG A 202 O HOH A 312 1555 1555 2.20 LINK MG MG A 202 O HOH A 344 1555 1555 2.19 LINK OG1BTHR C 87 NA NA C 202 1555 1555 3.07 LINK OG1 THR C 124 NA NA C 202 1555 1555 3.14 LINK NA NA C 202 O HOH C 461 1555 1555 2.64 LINK NA NA C 202 O HOH C 475 1555 1555 2.25 CISPEP 1 PRO B 924 PRO B 925 0 10.99 CISPEP 2 ASN B 1020 PRO B 1021 0 6.74 SITE 1 AC1 30 GLY A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC1 30 LYS A 16 SER A 17 ALA A 18 PHE A 28 SITE 3 AC1 30 VAL A 29 ASP A 30 GLU A 31 TYR A 32 SITE 4 AC1 30 PRO A 34 THR A 35 GLY A 60 GLN A 61 SITE 5 AC1 30 ASN A 116 LYS A 117 ASP A 119 LEU A 120 SITE 6 AC1 30 SER A 145 ALA A 146 LYS A 147 MG A 202 SITE 7 AC1 30 HOH A 312 HOH A 344 HOH A 355 HOH A 371 SITE 8 AC1 30 HOH A 397 HOH A 413 SITE 1 AC2 5 SER A 17 THR A 35 GNP A 201 HOH A 312 SITE 2 AC2 5 HOH A 344 SITE 1 AC3 9 VAL B 852 MET B 878 ASN B 879 VAL B 883 SITE 2 AC3 9 TYR B 884 ASP B 887 PHE B 890 ILE B 893 SITE 3 AC3 9 LEU B 901 SITE 1 AC4 6 GLN B 566 MET B 567 HIS B 616 MET B 617 SITE 2 AC4 6 HOH B2191 HOH B2216 SITE 1 AC5 3 ARG A 128 ARG B 767 PRO B 768 SITE 1 AC6 7 GLU A 37 MET A 67 GLN A 70 ALA B 619 SITE 2 AC6 7 ARG B 688 HOH B2131 HOH B2187 SITE 1 AC7 7 GLU B 611 TYR B 615 HIS B 616 ARG B 647 SITE 2 AC7 7 TYR B 681 VAL B 685 HOH B2272 SITE 1 AC8 1 TYR B1031 SITE 1 AC9 5 SER B 793 ASP B 794 PRO B 978 TYR B 979 SITE 2 AC9 5 HOH B2294 SITE 1 AD1 5 ARG B 786 GLU B 864 VAL B1040 HOH B2103 SITE 2 AD1 5 HOH B2297 SITE 1 AD2 7 LEU B 938 GLY C 15 LYS C 16 SER C 17 SITE 2 AD2 7 HOH C 304 HOH C 354 HOH C 428 SITE 1 AD3 6 ASN C 85 ASN C 86 THR C 87 THR C 124 SITE 2 AD3 6 HOH C 461 HOH C 475 CRYST1 183.627 183.627 179.056 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005446 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005446 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005585 0.00000