HEADER SIGNALING PROTEIN/AGONIST 21-APR-18 6D6N TITLE THE STRUCTURE OF LIGAND BINDING DOMAIN OF LASR IN COMPLEX WITH TP-1 TITLE 2 HOMOLOG, COMPOUND 16 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL ACTIVATOR PROTEIN LASR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM SOURCE 3 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 6 / 1C / PRS 101 / PAO1; SOURCE 7 GENE: LASR, PA1430; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LUXR RECEPTOR, SIGNALING PROTEIN-AGONIST COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.H.DONG,S.K.NAIR REVDAT 3 29-NOV-23 6D6N 1 REMARK REVDAT 2 03-OCT-18 6D6N 1 JRNL REVDAT 1 08-AUG-18 6D6N 0 JRNL AUTH M.C.O'REILLY,S.H.DONG,F.M.ROSSI,K.M.KARLEN,R.S.KUMAR, JRNL AUTH 2 S.K.NAIR,H.E.BLACKWELL JRNL TITL STRUCTURAL AND BIOCHEMICAL STUDIES OF NON-NATIVE AGONISTS OF JRNL TITL 2 THE LASR QUORUM-SENSING RECEPTOR REVEAL AN L3 LOOP "OUT" JRNL TITL 3 CONFORMATION FOR LASR. JRNL REF CELL CHEM BIOL V. 25 1128 2018 JRNL REFN ESSN 2451-9448 JRNL PMID 30033130 JRNL DOI 10.1016/J.CHEMBIOL.2018.06.007 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 60824 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3202 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4448 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 227 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4923 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 139 REMARK 3 SOLVENT ATOMS : 449 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.31000 REMARK 3 B22 (A**2) : 0.64000 REMARK 3 B33 (A**2) : 0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.80000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.244 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5237 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4815 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7109 ; 1.777 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11068 ; 1.056 ; 2.994 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 635 ; 5.425 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 236 ;35.089 ;23.475 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 826 ;16.203 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;17.090 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 734 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5955 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1274 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2513 ; 2.648 ; 2.798 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2512 ; 2.642 ; 2.797 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3133 ; 3.598 ; 4.178 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3134 ; 3.599 ; 4.179 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2724 ; 3.757 ; 3.211 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2725 ; 3.757 ; 3.211 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3969 ; 5.544 ; 4.649 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6178 ; 7.003 ;33.629 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6036 ; 6.871 ;33.014 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6D6N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000234077. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60824 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 75.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 80 MM CALCIUM ACETATE, 40 MM HEPES (PH REMARK 280 7.3), 3 MM DITHIOTHREITOL, AND 16% POLYETHYLENE GLYCOL 4000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 282K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.22750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LEU A 3 REMARK 465 VAL A 4 REMARK 465 ASP A 5 REMARK 465 SER A 91 REMARK 465 ILE A 92 REMARK 465 TYR A 93 REMARK 465 GLN A 94 REMARK 465 PRO A 170 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 LEU B 3 REMARK 465 VAL B 4 REMARK 465 ASP B 5 REMARK 465 GLY B 6 REMARK 465 PHE B 7 REMARK 465 LEU B 8 REMARK 465 GLU B 9 REMARK 465 LEU B 10 REMARK 465 GLU B 11 REMARK 465 ARG B 12 REMARK 465 SER B 13 REMARK 465 SER B 14 REMARK 465 PHE B 167 REMARK 465 GLU B 168 REMARK 465 HIS B 169 REMARK 465 PRO B 170 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 LEU C 3 REMARK 465 VAL C 4 REMARK 465 ASP C 5 REMARK 465 GLY C 6 REMARK 465 PHE C 167 REMARK 465 GLU C 168 REMARK 465 HIS C 169 REMARK 465 PRO C 170 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 LEU D 3 REMARK 465 VAL D 4 REMARK 465 ASP D 5 REMARK 465 GLY D 6 REMARK 465 ASP D 43 REMARK 465 SER D 44 REMARK 465 GLN D 45 REMARK 465 ASP D 46 REMARK 465 TYR D 47 REMARK 465 GLU D 48 REMARK 465 ASN D 49 REMARK 465 PHE D 167 REMARK 465 GLU D 168 REMARK 465 HIS D 169 REMARK 465 PRO D 170 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 364 O HOH C 368 2.04 REMARK 500 O HOH A 350 O HOH A 367 2.09 REMARK 500 O HOH D 368 O HOH D 369 2.12 REMARK 500 OE2 GLU D 139 O HOH D 301 2.17 REMARK 500 OH TYR A 69 OE1 GLU A 104 2.18 REMARK 500 O HOH A 346 O HOH C 367 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 122 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 71 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 71 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG C 137 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 VAL D 132 CB - CA - C ANGL. DEV. = -13.8 DEGREES REMARK 500 ARG D 137 NE - CZ - NH1 ANGL. DEV. = -8.1 DEGREES REMARK 500 ARG D 137 NE - CZ - NH2 ANGL. DEV. = 6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 168 -53.85 -122.81 REMARK 500 SER B 33 -72.02 -93.66 REMARK 500 ASP C 46 -157.65 -143.91 REMARK 500 ARG D 12 76.85 -60.42 REMARK 500 SER D 13 -153.43 -127.53 REMARK 500 ASP D 73 112.06 -36.95 REMARK 500 GLN D 94 -61.61 -107.84 REMARK 500 THR D 95 -179.26 -66.91 REMARK 500 LEU D 165 -47.97 -135.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 415 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH B 416 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH B 417 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH B 418 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH B 419 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH D 382 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH D 383 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH D 384 DISTANCE = 7.20 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PHE C 201 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FXJ A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FXJ B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PHE C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FXJ C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FXJ D 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6D6A RELATED DB: PDB REMARK 900 RELATED ID: 6D6B RELATED DB: PDB REMARK 900 RELATED ID: 6D6C RELATED DB: PDB REMARK 900 RELATED ID: 6D6D RELATED DB: PDB REMARK 900 RELATED ID: 6D6L RELATED DB: PDB REMARK 900 RELATED ID: 6D6M RELATED DB: PDB DBREF 6D6N A 1 170 UNP P25084 LASR_PSEAE 1 170 DBREF 6D6N B 1 170 UNP P25084 LASR_PSEAE 1 170 DBREF 6D6N C 1 170 UNP P25084 LASR_PSEAE 1 170 DBREF 6D6N D 1 170 UNP P25084 LASR_PSEAE 1 170 SEQRES 1 A 170 MET ALA LEU VAL ASP GLY PHE LEU GLU LEU GLU ARG SER SEQRES 2 A 170 SER GLY LYS LEU GLU TRP SER ALA ILE LEU GLN LYS MET SEQRES 3 A 170 ALA SER ASP LEU GLY PHE SER LYS ILE LEU PHE GLY LEU SEQRES 4 A 170 LEU PRO LYS ASP SER GLN ASP TYR GLU ASN ALA PHE ILE SEQRES 5 A 170 VAL GLY ASN TYR PRO ALA ALA TRP ARG GLU HIS TYR ASP SEQRES 6 A 170 ARG ALA GLY TYR ALA ARG VAL ASP PRO THR VAL SER HIS SEQRES 7 A 170 CYS THR GLN SER VAL LEU PRO ILE PHE TRP GLU PRO SER SEQRES 8 A 170 ILE TYR GLN THR ARG LYS GLN HIS GLU PHE PHE GLU GLU SEQRES 9 A 170 ALA SER ALA ALA GLY LEU VAL TYR GLY LEU THR MET PRO SEQRES 10 A 170 LEU HIS GLY ALA ARG GLY GLU LEU GLY ALA LEU SER LEU SEQRES 11 A 170 SER VAL GLU ALA GLU ASN ARG ALA GLU ALA ASN ARG PHE SEQRES 12 A 170 MET GLU SER VAL LEU PRO THR LEU TRP MET LEU LYS ASP SEQRES 13 A 170 TYR ALA LEU GLN SER GLY ALA GLY LEU ALA PHE GLU HIS SEQRES 14 A 170 PRO SEQRES 1 B 170 MET ALA LEU VAL ASP GLY PHE LEU GLU LEU GLU ARG SER SEQRES 2 B 170 SER GLY LYS LEU GLU TRP SER ALA ILE LEU GLN LYS MET SEQRES 3 B 170 ALA SER ASP LEU GLY PHE SER LYS ILE LEU PHE GLY LEU SEQRES 4 B 170 LEU PRO LYS ASP SER GLN ASP TYR GLU ASN ALA PHE ILE SEQRES 5 B 170 VAL GLY ASN TYR PRO ALA ALA TRP ARG GLU HIS TYR ASP SEQRES 6 B 170 ARG ALA GLY TYR ALA ARG VAL ASP PRO THR VAL SER HIS SEQRES 7 B 170 CYS THR GLN SER VAL LEU PRO ILE PHE TRP GLU PRO SER SEQRES 8 B 170 ILE TYR GLN THR ARG LYS GLN HIS GLU PHE PHE GLU GLU SEQRES 9 B 170 ALA SER ALA ALA GLY LEU VAL TYR GLY LEU THR MET PRO SEQRES 10 B 170 LEU HIS GLY ALA ARG GLY GLU LEU GLY ALA LEU SER LEU SEQRES 11 B 170 SER VAL GLU ALA GLU ASN ARG ALA GLU ALA ASN ARG PHE SEQRES 12 B 170 MET GLU SER VAL LEU PRO THR LEU TRP MET LEU LYS ASP SEQRES 13 B 170 TYR ALA LEU GLN SER GLY ALA GLY LEU ALA PHE GLU HIS SEQRES 14 B 170 PRO SEQRES 1 C 170 MET ALA LEU VAL ASP GLY PHE LEU GLU LEU GLU ARG SER SEQRES 2 C 170 SER GLY LYS LEU GLU TRP SER ALA ILE LEU GLN LYS MET SEQRES 3 C 170 ALA SER ASP LEU GLY PHE SER LYS ILE LEU PHE GLY LEU SEQRES 4 C 170 LEU PRO LYS ASP SER GLN ASP TYR GLU ASN ALA PHE ILE SEQRES 5 C 170 VAL GLY ASN TYR PRO ALA ALA TRP ARG GLU HIS TYR ASP SEQRES 6 C 170 ARG ALA GLY TYR ALA ARG VAL ASP PRO THR VAL SER HIS SEQRES 7 C 170 CYS THR GLN SER VAL LEU PRO ILE PHE TRP GLU PRO SER SEQRES 8 C 170 ILE TYR GLN THR ARG LYS GLN HIS GLU PHE PHE GLU GLU SEQRES 9 C 170 ALA SER ALA ALA GLY LEU VAL TYR GLY LEU THR MET PRO SEQRES 10 C 170 LEU HIS GLY ALA ARG GLY GLU LEU GLY ALA LEU SER LEU SEQRES 11 C 170 SER VAL GLU ALA GLU ASN ARG ALA GLU ALA ASN ARG PHE SEQRES 12 C 170 MET GLU SER VAL LEU PRO THR LEU TRP MET LEU LYS ASP SEQRES 13 C 170 TYR ALA LEU GLN SER GLY ALA GLY LEU ALA PHE GLU HIS SEQRES 14 C 170 PRO SEQRES 1 D 170 MET ALA LEU VAL ASP GLY PHE LEU GLU LEU GLU ARG SER SEQRES 2 D 170 SER GLY LYS LEU GLU TRP SER ALA ILE LEU GLN LYS MET SEQRES 3 D 170 ALA SER ASP LEU GLY PHE SER LYS ILE LEU PHE GLY LEU SEQRES 4 D 170 LEU PRO LYS ASP SER GLN ASP TYR GLU ASN ALA PHE ILE SEQRES 5 D 170 VAL GLY ASN TYR PRO ALA ALA TRP ARG GLU HIS TYR ASP SEQRES 6 D 170 ARG ALA GLY TYR ALA ARG VAL ASP PRO THR VAL SER HIS SEQRES 7 D 170 CYS THR GLN SER VAL LEU PRO ILE PHE TRP GLU PRO SER SEQRES 8 D 170 ILE TYR GLN THR ARG LYS GLN HIS GLU PHE PHE GLU GLU SEQRES 9 D 170 ALA SER ALA ALA GLY LEU VAL TYR GLY LEU THR MET PRO SEQRES 10 D 170 LEU HIS GLY ALA ARG GLY GLU LEU GLY ALA LEU SER LEU SEQRES 11 D 170 SER VAL GLU ALA GLU ASN ARG ALA GLU ALA ASN ARG PHE SEQRES 12 D 170 MET GLU SER VAL LEU PRO THR LEU TRP MET LEU LYS ASP SEQRES 13 D 170 TYR ALA LEU GLN SER GLY ALA GLY LEU ALA PHE GLU HIS SEQRES 14 D 170 PRO HET FXJ A 201 32 HET FXJ B 201 32 HET PHE C 201 11 HET FXJ C 202 32 HET FXJ D 201 32 HETNAM FXJ 2,4-DIBROMO-6-{[(2-NITROBENZENE-1-CARBONYL) HETNAM 2 FXJ AMINO]METHYL}PHENYL 4-METHOXYBENZOATE HETNAM PHE PHENYLALANINE FORMUL 5 FXJ 4(C22 H16 BR2 N2 O6) FORMUL 7 PHE C9 H11 N O2 FORMUL 10 HOH *449(H2 O) HELIX 1 AA1 PHE A 7 ARG A 12 1 6 HELIX 2 AA2 GLY A 15 LEU A 30 1 16 HELIX 3 AA3 PRO A 57 ALA A 67 1 11 HELIX 4 AA4 GLY A 68 VAL A 72 5 5 HELIX 5 AA5 ASP A 73 SER A 82 1 10 HELIX 6 AA6 ARG A 96 ALA A 108 1 13 HELIX 7 AA7 ASN A 136 GLU A 168 1 33 HELIX 8 AA8 LYS B 16 GLY B 31 1 16 HELIX 9 AA9 PRO B 57 GLY B 68 1 12 HELIX 10 AB1 TYR B 69 VAL B 72 5 4 HELIX 11 AB2 ASP B 73 SER B 82 1 10 HELIX 12 AB3 GLU B 89 TYR B 93 5 5 HELIX 13 AB4 THR B 95 ALA B 108 1 14 HELIX 14 AB5 ASN B 136 ALA B 166 1 31 HELIX 15 AB6 GLY C 15 GLY C 31 1 17 HELIX 16 AB7 PRO C 57 GLY C 68 1 12 HELIX 17 AB8 TYR C 69 VAL C 72 5 4 HELIX 18 AB9 ASP C 73 SER C 82 1 10 HELIX 19 AC1 GLU C 89 TYR C 93 5 5 HELIX 20 AC2 THR C 95 ALA C 108 1 14 HELIX 21 AC3 ASN C 136 ALA C 166 1 31 HELIX 22 AC4 LEU D 8 ARG D 12 1 5 HELIX 23 AC5 GLY D 15 LEU D 30 1 16 HELIX 24 AC6 PRO D 57 ALA D 67 1 11 HELIX 25 AC7 GLY D 68 VAL D 72 5 5 HELIX 26 AC8 ASP D 73 SER D 82 1 10 HELIX 27 AC9 GLU D 89 TYR D 93 5 5 HELIX 28 AD1 THR D 95 ALA D 108 1 14 HELIX 29 AD2 ASN D 136 GLY D 164 1 29 SHEET 1 AA1 5 PHE A 51 GLY A 54 0 SHEET 2 AA1 5 LYS A 34 LEU A 40 -1 N PHE A 37 O VAL A 53 SHEET 3 AA1 5 LEU A 125 SER A 131 -1 O SER A 129 N LEU A 36 SHEET 4 AA1 5 GLY A 113 HIS A 119 -1 N MET A 116 O LEU A 128 SHEET 5 AA1 5 ILE A 86 PHE A 87 -1 N ILE A 86 O THR A 115 SHEET 1 AA2 5 PHE B 51 GLY B 54 0 SHEET 2 AA2 5 ILE B 35 LEU B 40 -1 N PHE B 37 O VAL B 53 SHEET 3 AA2 5 LEU B 125 VAL B 132 -1 O SER B 129 N LEU B 36 SHEET 4 AA2 5 TYR B 112 HIS B 119 -1 N MET B 116 O LEU B 128 SHEET 5 AA2 5 ILE B 86 PHE B 87 -1 N ILE B 86 O THR B 115 SHEET 1 AA3 5 PHE C 51 GLY C 54 0 SHEET 2 AA3 5 LYS C 34 LEU C 40 -1 N PHE C 37 O VAL C 53 SHEET 3 AA3 5 LEU C 125 VAL C 132 -1 O ALA C 127 N GLY C 38 SHEET 4 AA3 5 TYR C 112 HIS C 119 -1 N MET C 116 O LEU C 128 SHEET 5 AA3 5 ILE C 86 PHE C 87 -1 N ILE C 86 O THR C 115 SHEET 1 AA4 5 PHE D 51 GLY D 54 0 SHEET 2 AA4 5 LYS D 34 LEU D 40 -1 N PHE D 37 O VAL D 53 SHEET 3 AA4 5 LEU D 125 VAL D 132 -1 O LEU D 125 N LEU D 40 SHEET 4 AA4 5 TYR D 112 HIS D 119 -1 N MET D 116 O LEU D 128 SHEET 5 AA4 5 ILE D 86 PHE D 87 -1 N ILE D 86 O THR D 115 SITE 1 AC1 15 LEU A 36 GLY A 38 LEU A 40 TYR A 47 SITE 2 AC1 15 TYR A 56 TRP A 60 TYR A 64 ASP A 73 SITE 3 AC1 15 THR A 75 TRP A 88 LEU A 110 LEU A 125 SITE 4 AC1 15 GLY A 126 SER A 129 HOH A 353 SITE 1 AC2 17 LEU B 36 LEU B 40 TYR B 47 ILE B 52 SITE 2 AC2 17 TYR B 56 TRP B 60 TYR B 64 ASP B 73 SITE 3 AC2 17 THR B 75 VAL B 76 TRP B 88 TYR B 93 SITE 4 AC2 17 LEU B 110 LEU B 125 GLY B 126 SER B 129 SITE 5 AC2 17 HOH B 337 SITE 1 AC3 4 LEU C 39 PRO C 41 ALA C 163 ALA C 166 SITE 1 AC4 14 LEU C 36 GLY C 38 TYR C 47 TYR C 56 SITE 2 AC4 14 TRP C 60 TYR C 64 ASP C 73 THR C 75 SITE 3 AC4 14 TRP C 88 TYR C 93 LEU C 110 GLY C 126 SITE 4 AC4 14 SER C 129 HOH C 341 SITE 1 AC5 13 LEU D 36 LEU D 40 TYR D 56 TRP D 60 SITE 2 AC5 13 TYR D 64 ASP D 73 THR D 75 TRP D 88 SITE 3 AC5 13 TYR D 93 PHE D 101 LEU D 110 LEU D 125 SITE 4 AC5 13 SER D 129 CRYST1 56.297 84.455 76.907 90.00 101.12 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017763 0.000000 0.003492 0.00000 SCALE2 0.000000 0.011841 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013252 0.00000