HEADER LIPID BINDING PROTEIN 24-APR-18 6D7A TITLE STRUCTURE OF T. GONDII PLP1 BETA-RICH DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERFORIN-LIKE PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 GENE: PLP1; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-1711 KEYWDS PORE FORMING PROTEIN, TOXIN, PERFORIN-LIKE PROTEIN, BETA-PRISM, LIPID KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.J.GUERRA,N.M.KOROPATKIN,Z.WAWRZAK,C.M.E.BAHR,V.B.CARRUTHERS REVDAT 3 18-DEC-19 6D7A 1 REMARK REVDAT 2 16-JAN-19 6D7A 1 JRNL REVDAT 1 16-MAY-18 6D7A 0 JRNL AUTH A.J.GUERRA,O.ZHANG,C.M.E.BAHR,M.H.HUYNH,J.DELPROPOSTO, JRNL AUTH 2 W.C.BROWN,Z.WAWRZAK,N.M.KOROPATKIN,V.B.CARRUTHERS JRNL TITL STRUCTURAL BASIS OF TOXOPLASMA GONDII PERFORIN-LIKE PROTEIN JRNL TITL 2 1 MEMBRANE INTERACTION AND ACTIVITY DURING EGRESS. JRNL REF PLOS PATHOG. V. 14 07476 2018 JRNL REFN ESSN 1553-7374 JRNL PMID 30513119 JRNL DOI 10.1371/JOURNAL.PPAT.1007476 REMARK 2 REMARK 2 RESOLUTION. 1.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 191287 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 9505 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8885 - 3.5080 0.94 6236 281 0.1477 0.1623 REMARK 3 2 3.5080 - 2.7856 0.99 6423 296 0.1390 0.1527 REMARK 3 3 2.7856 - 2.4338 1.00 6468 296 0.1277 0.1474 REMARK 3 4 2.4338 - 2.2115 1.00 6332 378 0.1185 0.1346 REMARK 3 5 2.2115 - 2.0530 1.00 6424 308 0.1118 0.1337 REMARK 3 6 2.0530 - 1.9320 0.99 6407 307 0.1126 0.1306 REMARK 3 7 1.9320 - 1.8353 1.00 6280 361 0.1142 0.1517 REMARK 3 8 1.8353 - 1.7554 1.00 6437 320 0.1192 0.1371 REMARK 3 9 1.7554 - 1.6879 0.99 6310 347 0.1144 0.1433 REMARK 3 10 1.6879 - 1.6296 0.99 6290 343 0.1110 0.1289 REMARK 3 11 1.6296 - 1.5787 0.99 6331 355 0.1080 0.1333 REMARK 3 12 1.5787 - 1.5336 0.99 6324 283 0.1037 0.1336 REMARK 3 13 1.5336 - 1.4932 0.99 6316 327 0.1110 0.1454 REMARK 3 14 1.4932 - 1.4568 0.99 6269 330 0.1241 0.1470 REMARK 3 15 1.4568 - 1.4237 0.99 6291 324 0.1231 0.1589 REMARK 3 16 1.4237 - 1.3934 0.98 6280 301 0.1312 0.1706 REMARK 3 17 1.3934 - 1.3655 0.98 6276 363 0.1376 0.1722 REMARK 3 18 1.3655 - 1.3397 0.98 6242 322 0.1444 0.1852 REMARK 3 19 1.3397 - 1.3158 0.98 6229 333 0.1532 0.1881 REMARK 3 20 1.3158 - 1.2935 0.98 6194 305 0.1668 0.2128 REMARK 3 21 1.2935 - 1.2726 0.98 6216 327 0.1702 0.2062 REMARK 3 22 1.2726 - 1.2531 0.98 6304 306 0.1810 0.2237 REMARK 3 23 1.2531 - 1.2346 0.97 6112 352 0.1991 0.2284 REMARK 3 24 1.2346 - 1.2172 0.96 6097 329 0.2162 0.2360 REMARK 3 25 1.2172 - 1.2008 0.96 6045 373 0.2275 0.2746 REMARK 3 26 1.2008 - 1.1852 0.91 5746 292 0.2489 0.2894 REMARK 3 27 1.1852 - 1.1704 0.84 5395 309 0.2752 0.2868 REMARK 3 28 1.1704 - 1.1563 0.78 4888 267 0.2983 0.2730 REMARK 3 29 1.1563 - 1.1428 0.70 4450 247 0.2986 0.3060 REMARK 3 30 1.1428 - 1.1300 0.66 4170 223 0.3102 0.3303 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4248 REMARK 3 ANGLE : 1.044 5808 REMARK 3 CHIRALITY : 0.089 638 REMARK 3 PLANARITY : 0.007 772 REMARK 3 DIHEDRAL : 15.507 1634 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6D7A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233896. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : C(111) DIAMOND LAUE REMARK 200 OPTICS : BE LENS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 191300 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.130 REMARK 200 RESOLUTION RANGE LOW (A) : 24.883 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.07709 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.17 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CACODYLATE, 0.8M SODIUM REMARK 280 FORMATE, 15% PEG 4000, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.99000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.42500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.99000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.42500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1616 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1610 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 805 REMARK 465 ASN A 806 REMARK 465 ALA A 807 REMARK 465 VAL A 808 REMARK 465 GLY A 809 REMARK 465 LEU A 810 REMARK 465 THR A 811 REMARK 465 PRO A 812 REMARK 465 GLN A 813 REMARK 465 ASP A 814 REMARK 465 LEU A 815 REMARK 465 SER A 816 REMARK 465 ALA A 817 REMARK 465 LEU A 818 REMARK 465 THR A 819 REMARK 465 ASN A 1086 REMARK 465 GLU A 1087 REMARK 465 PRO A 1088 REMARK 465 ALA A 1089 REMARK 465 MET A 1090 REMARK 465 HIS A 1091 REMARK 465 VAL A 1092 REMARK 465 ALA A 1093 REMARK 465 THR A 1094 REMARK 465 ASP A 1095 REMARK 465 VAL A 1096 REMARK 465 GLY A 1097 REMARK 465 LYS A 1098 REMARK 465 ALA A 1099 REMARK 465 LYS A 1100 REMARK 465 GLY A 1101 REMARK 465 ASN A 1102 REMARK 465 GLY A 1103 REMARK 465 LYS A 1104 REMARK 465 LYS A 1105 REMARK 465 LYS A 1106 REMARK 465 LYS A 1107 REMARK 465 GLY A 1108 REMARK 465 ARG A 1109 REMARK 465 LYS A 1110 REMARK 465 GLY A 1111 REMARK 465 LYS A 1112 REMARK 465 ASN A 1113 REMARK 465 LYS A 1114 REMARK 465 THR A 1115 REMARK 465 ASN A 1116 REMARK 465 ALA A 1117 REMARK 465 PRO A 1118 REMARK 465 ASN A 1119 REMARK 465 GLU A 1120 REMARK 465 VAL A 1121 REMARK 465 GLU A 1122 REMARK 465 GLU A 1123 REMARK 465 GLY A 1124 REMARK 465 GLN A 1125 REMARK 465 GLN A 1126 REMARK 465 LEU A 1127 REMARK 465 GLY A 1128 REMARK 465 ALA A 1129 REMARK 465 ASP A 1130 REMARK 465 SER A 1131 REMARK 465 PRO A 1132 REMARK 465 SER A 1133 REMARK 465 GLN A 1134 REMARK 465 VAL A 1135 REMARK 465 SER A 1136 REMARK 465 VAL A 1137 REMARK 465 PRO A 1138 REMARK 465 ALA A 1139 REMARK 465 ASP A 1140 REMARK 465 ALA A 1141 REMARK 465 ASP A 1142 REMARK 465 SER A 1143 REMARK 465 GLY A 1144 REMARK 465 PRO A 1145 REMARK 465 THR A 1146 REMARK 465 SER A 1147 REMARK 465 LYS A 1148 REMARK 465 THR A 1149 REMARK 465 MET A 1150 REMARK 465 SER A 1151 REMARK 465 SER A 1152 REMARK 465 LEU A 1153 REMARK 465 LYS A 1154 REMARK 465 LEU A 1155 REMARK 465 ALA A 1156 REMARK 465 PRO A 1157 REMARK 465 VAL A 1158 REMARK 465 LYS A 1159 REMARK 465 LEU A 1160 REMARK 465 LEU A 1161 REMARK 465 ASP A 1162 REMARK 465 LEU A 1163 REMARK 465 SER B 805 REMARK 465 ASN B 806 REMARK 465 ALA B 807 REMARK 465 VAL B 808 REMARK 465 GLY B 809 REMARK 465 LEU B 810 REMARK 465 THR B 811 REMARK 465 PRO B 812 REMARK 465 GLN B 813 REMARK 465 ASP B 814 REMARK 465 LEU B 815 REMARK 465 SER B 816 REMARK 465 ALA B 817 REMARK 465 LEU B 818 REMARK 465 THR B 819 REMARK 465 GLY B 820 REMARK 465 ASN B 1086 REMARK 465 GLU B 1087 REMARK 465 PRO B 1088 REMARK 465 ALA B 1089 REMARK 465 MET B 1090 REMARK 465 HIS B 1091 REMARK 465 VAL B 1092 REMARK 465 ALA B 1093 REMARK 465 THR B 1094 REMARK 465 ASP B 1095 REMARK 465 VAL B 1096 REMARK 465 GLY B 1097 REMARK 465 LYS B 1098 REMARK 465 ALA B 1099 REMARK 465 LYS B 1100 REMARK 465 GLY B 1101 REMARK 465 ASN B 1102 REMARK 465 GLY B 1103 REMARK 465 LYS B 1104 REMARK 465 LYS B 1105 REMARK 465 LYS B 1106 REMARK 465 LYS B 1107 REMARK 465 GLY B 1108 REMARK 465 ARG B 1109 REMARK 465 LYS B 1110 REMARK 465 GLY B 1111 REMARK 465 LYS B 1112 REMARK 465 ASN B 1113 REMARK 465 LYS B 1114 REMARK 465 THR B 1115 REMARK 465 ASN B 1116 REMARK 465 ALA B 1117 REMARK 465 PRO B 1118 REMARK 465 ASN B 1119 REMARK 465 GLU B 1120 REMARK 465 VAL B 1121 REMARK 465 GLU B 1122 REMARK 465 GLU B 1123 REMARK 465 GLY B 1124 REMARK 465 GLN B 1125 REMARK 465 GLN B 1126 REMARK 465 LEU B 1127 REMARK 465 GLY B 1128 REMARK 465 ALA B 1129 REMARK 465 ASP B 1130 REMARK 465 SER B 1131 REMARK 465 PRO B 1132 REMARK 465 SER B 1133 REMARK 465 GLN B 1134 REMARK 465 VAL B 1135 REMARK 465 SER B 1136 REMARK 465 VAL B 1137 REMARK 465 PRO B 1138 REMARK 465 ALA B 1139 REMARK 465 ASP B 1140 REMARK 465 ALA B 1141 REMARK 465 ASP B 1142 REMARK 465 SER B 1143 REMARK 465 GLY B 1144 REMARK 465 PRO B 1145 REMARK 465 THR B 1146 REMARK 465 SER B 1147 REMARK 465 LYS B 1148 REMARK 465 THR B 1149 REMARK 465 MET B 1150 REMARK 465 SER B 1151 REMARK 465 SER B 1152 REMARK 465 LEU B 1153 REMARK 465 LYS B 1154 REMARK 465 LEU B 1155 REMARK 465 ALA B 1156 REMARK 465 PRO B 1157 REMARK 465 VAL B 1158 REMARK 465 LYS B 1159 REMARK 465 LEU B 1160 REMARK 465 LEU B 1161 REMARK 465 ASP B 1162 REMARK 465 LEU B 1163 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 824 105.74 -168.37 REMARK 500 SER A1013 30.92 -144.76 REMARK 500 SER A1013 26.83 -143.34 REMARK 500 ASN A1038 79.45 -113.40 REMARK 500 LYS A1045 58.77 -90.64 REMARK 500 ASP A1064 105.70 -160.85 REMARK 500 LEU A1068 -110.43 60.16 REMARK 500 HIS B 920 -4.19 79.03 REMARK 500 SER B1013 29.15 -144.77 REMARK 500 SER B1013 28.67 -144.52 REMARK 500 ASN B1038 75.60 -110.92 REMARK 500 LYS B1045 58.31 -91.00 REMARK 500 LEU B1068 -138.75 -104.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1630 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH B1623 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH B1624 DISTANCE = 6.63 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 830 O REMARK 620 2 ALA A 832 O 100.0 REMARK 620 3 GLU A1051 OE2 128.1 131.7 REMARK 620 4 HOH A1434 O 91.4 93.8 89.8 REMARK 620 5 HOH A1530 O 94.0 92.9 80.8 170.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 892 O REMARK 620 2 ASP A 894 O 93.6 REMARK 620 3 GLU A 895 OE2 114.8 89.0 REMARK 620 4 HOH A1490 O 105.6 79.1 138.4 REMARK 620 5 HOH A1499 O 93.0 168.0 97.3 89.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 830 O REMARK 620 2 ALA B 832 O 99.8 REMARK 620 3 GLU B1051 OE2 125.2 134.2 REMARK 620 4 HOH B1422 O 93.5 92.6 92.4 REMARK 620 5 HOH B1509 O 84.4 83.2 92.6 174.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 892 O REMARK 620 2 ASP B 894 O 94.8 REMARK 620 3 GLU B 895 OE2 115.7 89.2 REMARK 620 4 HOH B1442 O 104.8 78.3 138.4 REMARK 620 5 HOH B1505 O 92.6 166.8 97.4 89.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 1202 DBREF 6D7A A 807 1163 UNP A1E348 A1E348_TOXGO 794 1150 DBREF 6D7A B 807 1163 UNP A1E348 A1E348_TOXGO 794 1150 SEQADV 6D7A SER A 805 UNP A1E348 EXPRESSION TAG SEQADV 6D7A ASN A 806 UNP A1E348 EXPRESSION TAG SEQADV 6D7A SER B 805 UNP A1E348 EXPRESSION TAG SEQADV 6D7A ASN B 806 UNP A1E348 EXPRESSION TAG SEQRES 1 A 359 SER ASN ALA VAL GLY LEU THR PRO GLN ASP LEU SER ALA SEQRES 2 A 359 LEU THR GLY VAL THR ARG ASN LEU PRO LYS GLN LEU THR SEQRES 3 A 359 GLN ALA THR GLN VAL ALA TRP SER GLY PRO PRO PRO GLY SEQRES 4 A 359 PHE ALA LYS CYS PRO GLY GLY GLN VAL VAL ILE LEU GLY SEQRES 5 A 359 PHE ALA MET HIS LEU ASN PHE LYS GLU PRO GLY THR ASP SEQRES 6 A 359 ASN PHE ARG ILE ILE SER CYS PRO PRO GLY ARG GLU LYS SEQRES 7 A 359 CYS ASP GLY VAL GLY THR ALA SER SER GLU THR ASP GLU SEQRES 8 A 359 GLY ARG ILE TYR ILE LEU CYS GLY GLU GLU PRO ILE ASN SEQRES 9 A 359 GLU ILE GLN GLN VAL VAL ALA GLU SER PRO ALA HIS ALA SEQRES 10 A 359 GLY ALA SER VAL LEU GLU ALA SER CYS PRO ASP GLU THR SEQRES 11 A 359 VAL VAL VAL GLY GLY PHE GLY ILE SER VAL ARG GLY GLY SEQRES 12 A 359 SER ASP GLY LEU ASP SER PHE SER ILE GLU SER CYS THR SEQRES 13 A 359 THR GLY GLN THR ILE CYS THR LYS ALA PRO THR ARG GLY SEQRES 14 A 359 SER GLU LYS ASN PHE LEU TRP MET MET CYS VAL ASP LYS SEQRES 15 A 359 GLN TYR PRO GLY LEU ARG GLU LEU VAL ASN VAL ALA GLU SEQRES 16 A 359 LEU GLY SER HIS GLY ASN ALA ASN LYS ARG ALA VAL ASN SEQRES 17 A 359 SER ASP GLY ASN VAL ASP VAL LYS CYS PRO ALA ASN SER SEQRES 18 A 359 SER ILE VAL LEU GLY TYR VAL MET GLU ALA HIS THR ASN SEQRES 19 A 359 MET GLN PHE VAL ARG ASP LYS PHE LEU GLN CYS PRO GLU SEQRES 20 A 359 ASN ALA SER GLU CYS LYS MET THR GLY LYS GLY VAL ASP SEQRES 21 A 359 HIS GLY MET LEU TRP LEU PHE ASP ARG HIS ALA LEU PHE SEQRES 22 A 359 GLY TRP ILE ILE CYS LYS THR VAL ASN GLU PRO ALA MET SEQRES 23 A 359 HIS VAL ALA THR ASP VAL GLY LYS ALA LYS GLY ASN GLY SEQRES 24 A 359 LYS LYS LYS LYS GLY ARG LYS GLY LYS ASN LYS THR ASN SEQRES 25 A 359 ALA PRO ASN GLU VAL GLU GLU GLY GLN GLN LEU GLY ALA SEQRES 26 A 359 ASP SER PRO SER GLN VAL SER VAL PRO ALA ASP ALA ASP SEQRES 27 A 359 SER GLY PRO THR SER LYS THR MET SER SER LEU LYS LEU SEQRES 28 A 359 ALA PRO VAL LYS LEU LEU ASP LEU SEQRES 1 B 359 SER ASN ALA VAL GLY LEU THR PRO GLN ASP LEU SER ALA SEQRES 2 B 359 LEU THR GLY VAL THR ARG ASN LEU PRO LYS GLN LEU THR SEQRES 3 B 359 GLN ALA THR GLN VAL ALA TRP SER GLY PRO PRO PRO GLY SEQRES 4 B 359 PHE ALA LYS CYS PRO GLY GLY GLN VAL VAL ILE LEU GLY SEQRES 5 B 359 PHE ALA MET HIS LEU ASN PHE LYS GLU PRO GLY THR ASP SEQRES 6 B 359 ASN PHE ARG ILE ILE SER CYS PRO PRO GLY ARG GLU LYS SEQRES 7 B 359 CYS ASP GLY VAL GLY THR ALA SER SER GLU THR ASP GLU SEQRES 8 B 359 GLY ARG ILE TYR ILE LEU CYS GLY GLU GLU PRO ILE ASN SEQRES 9 B 359 GLU ILE GLN GLN VAL VAL ALA GLU SER PRO ALA HIS ALA SEQRES 10 B 359 GLY ALA SER VAL LEU GLU ALA SER CYS PRO ASP GLU THR SEQRES 11 B 359 VAL VAL VAL GLY GLY PHE GLY ILE SER VAL ARG GLY GLY SEQRES 12 B 359 SER ASP GLY LEU ASP SER PHE SER ILE GLU SER CYS THR SEQRES 13 B 359 THR GLY GLN THR ILE CYS THR LYS ALA PRO THR ARG GLY SEQRES 14 B 359 SER GLU LYS ASN PHE LEU TRP MET MET CYS VAL ASP LYS SEQRES 15 B 359 GLN TYR PRO GLY LEU ARG GLU LEU VAL ASN VAL ALA GLU SEQRES 16 B 359 LEU GLY SER HIS GLY ASN ALA ASN LYS ARG ALA VAL ASN SEQRES 17 B 359 SER ASP GLY ASN VAL ASP VAL LYS CYS PRO ALA ASN SER SEQRES 18 B 359 SER ILE VAL LEU GLY TYR VAL MET GLU ALA HIS THR ASN SEQRES 19 B 359 MET GLN PHE VAL ARG ASP LYS PHE LEU GLN CYS PRO GLU SEQRES 20 B 359 ASN ALA SER GLU CYS LYS MET THR GLY LYS GLY VAL ASP SEQRES 21 B 359 HIS GLY MET LEU TRP LEU PHE ASP ARG HIS ALA LEU PHE SEQRES 22 B 359 GLY TRP ILE ILE CYS LYS THR VAL ASN GLU PRO ALA MET SEQRES 23 B 359 HIS VAL ALA THR ASP VAL GLY LYS ALA LYS GLY ASN GLY SEQRES 24 B 359 LYS LYS LYS LYS GLY ARG LYS GLY LYS ASN LYS THR ASN SEQRES 25 B 359 ALA PRO ASN GLU VAL GLU GLU GLY GLN GLN LEU GLY ALA SEQRES 26 B 359 ASP SER PRO SER GLN VAL SER VAL PRO ALA ASP ALA ASP SEQRES 27 B 359 SER GLY PRO THR SER LYS THR MET SER SER LEU LYS LEU SEQRES 28 B 359 ALA PRO VAL LYS LEU LEU ASP LEU HET NA A1201 1 HET NA A1202 1 HET NA B1201 1 HET NA B1202 1 HETNAM NA SODIUM ION FORMUL 3 NA 4(NA 1+) FORMUL 7 HOH *654(H2 O) HELIX 1 AA1 ASN A 824 ALA A 832 1 9 HELIX 2 AA2 ASP A 949 PHE A 954 5 6 HELIX 3 AA3 GLY A 990 ARG A 992 5 3 HELIX 4 AA4 ASN A 1038 VAL A 1042 5 5 HELIX 5 AA5 ASN B 824 ALA B 832 1 9 HELIX 6 AA6 ASP B 949 PHE B 954 5 6 HELIX 7 AA7 GLY B 990 ARG B 992 5 3 HELIX 8 AA8 ASN B 1038 VAL B 1042 5 5 SHEET 1 AA1 4 THR A 833 GLY A 839 0 SHEET 2 AA1 4 GLU A 895 GLY A 903 -1 O GLY A 896 N GLY A 839 SHEET 3 AA1 4 VAL A 852 LEU A 861 -1 N ILE A 854 O LEU A 901 SHEET 4 AA1 4 ARG A 872 SER A 875 -1 O ILE A 874 N ALA A 858 SHEET 1 AA2 2 PHE A 844 LYS A 846 0 SHEET 2 AA2 2 LYS A 882 ASP A 884 -1 O CYS A 883 N ALA A 845 SHEET 1 AA3 4 ILE A 910 GLU A 916 0 SHEET 2 AA3 4 LYS A 976 ASP A 985 -1 O CYS A 983 N GLN A 911 SHEET 3 AA3 4 THR A 934 VAL A 944 -1 N VAL A 937 O MET A 982 SHEET 4 AA3 4 SER A 955 SER A 958 -1 O GLU A 957 N GLY A 941 SHEET 1 AA4 2 LEU A 926 SER A 929 0 SHEET 2 AA4 2 ILE A 965 LYS A 968 -1 O LYS A 968 N LEU A 926 SHEET 1 AA5 4 LEU A 994 ASN A1005 0 SHEET 2 AA5 4 ARG A1073 THR A1084 -1 O LEU A1076 N GLY A1001 SHEET 3 AA5 4 SER A1025 HIS A1036 -1 N VAL A1028 O ILE A1081 SHEET 4 AA5 4 PHE A1046 GLN A1048 -1 O LEU A1047 N VAL A1032 SHEET 1 AA6 2 ASN A1016 LYS A1020 0 SHEET 2 AA6 2 GLU A1055 THR A1059 -1 O CYS A1056 N VAL A1019 SHEET 1 AA7 4 THR B 833 GLY B 839 0 SHEET 2 AA7 4 GLU B 895 GLY B 903 -1 O GLY B 896 N GLY B 839 SHEET 3 AA7 4 VAL B 852 LEU B 861 -1 N ILE B 854 O LEU B 901 SHEET 4 AA7 4 ARG B 872 SER B 875 -1 O ILE B 874 N ALA B 858 SHEET 1 AA8 2 PHE B 844 LYS B 846 0 SHEET 2 AA8 2 LYS B 882 ASP B 884 -1 O CYS B 883 N ALA B 845 SHEET 1 AA9 4 ILE B 910 GLU B 916 0 SHEET 2 AA9 4 LYS B 976 ASP B 985 -1 O CYS B 983 N GLN B 911 SHEET 3 AA9 4 THR B 934 VAL B 944 -1 N VAL B 937 O MET B 982 SHEET 4 AA9 4 SER B 955 SER B 958 -1 O GLU B 957 N GLY B 941 SHEET 1 AB1 2 LEU B 926 SER B 929 0 SHEET 2 AB1 2 ILE B 965 LYS B 968 -1 O LYS B 968 N LEU B 926 SHEET 1 AB2 4 LEU B 994 ASN B1005 0 SHEET 2 AB2 4 ARG B1073 THR B1084 -1 O LEU B1076 N GLY B1001 SHEET 3 AB2 4 SER B1025 HIS B1036 -1 N VAL B1028 O ILE B1081 SHEET 4 AB2 4 PHE B1046 GLN B1048 -1 O LEU B1047 N VAL B1032 SHEET 1 AB3 2 ASN B1016 LYS B1020 0 SHEET 2 AB3 2 GLU B1055 THR B1059 -1 O CYS B1056 N VAL B1019 SSBOND 1 CYS A 847 CYS A 902 1555 1555 2.09 SSBOND 2 CYS A 876 CYS A 883 1555 1555 2.05 SSBOND 3 CYS A 930 CYS A 983 1555 1555 2.09 SSBOND 4 CYS A 959 CYS A 966 1555 1555 2.05 SSBOND 5 CYS A 1021 CYS A 1082 1555 1555 2.11 SSBOND 6 CYS A 1049 CYS A 1056 1555 1555 2.07 SSBOND 7 CYS B 847 CYS B 902 1555 1555 2.08 SSBOND 8 CYS B 876 CYS B 883 1555 1555 2.05 SSBOND 9 CYS B 930 CYS B 983 1555 1555 2.10 SSBOND 10 CYS B 959 CYS B 966 1555 1555 2.05 SSBOND 11 CYS B 1021 CYS B 1082 1555 1555 2.11 SSBOND 12 CYS B 1049 CYS B 1056 1555 1555 2.07 LINK O THR A 830 NA NA A1202 1555 1555 2.32 LINK O ALA A 832 NA NA A1202 1555 1555 2.20 LINK O GLU A 892 NA NA A1201 1555 1555 2.43 LINK O ASP A 894 NA NA A1201 1555 1555 2.36 LINK OE2 GLU A 895 NA NA A1201 1555 1555 2.39 LINK OE2 GLU A1051 NA NA A1202 1555 1555 2.33 LINK O THR B 830 NA NA B1202 1555 1555 2.28 LINK O ALA B 832 NA NA B1202 1555 1555 2.22 LINK O GLU B 892 NA NA B1201 1555 1555 2.41 LINK O ASP B 894 NA NA B1201 1555 1555 2.34 LINK OE2 GLU B 895 NA NA B1201 1555 1555 2.36 LINK OE2 GLU B1051 NA NA B1202 1555 1555 2.34 LINK NA NA A1201 O HOH A1490 1555 1555 2.39 LINK NA NA A1201 O HOH A1499 1555 1555 2.32 LINK NA NA A1202 O HOH A1434 1555 1555 2.35 LINK NA NA A1202 O HOH A1530 1555 1555 2.37 LINK NA NA B1201 O HOH B1442 1555 1555 2.45 LINK NA NA B1201 O HOH B1505 1555 1555 2.32 LINK NA NA B1202 O HOH B1422 1555 1555 2.35 LINK NA NA B1202 O HOH B1509 1555 1555 2.46 CISPEP 1 PRO A 841 PRO A 842 0 0.46 CISPEP 2 PRO B 841 PRO B 842 0 1.15 SITE 1 AC1 5 GLU A 892 ASP A 894 GLU A 895 HOH A1490 SITE 2 AC1 5 HOH A1499 SITE 1 AC2 5 THR A 830 ALA A 832 GLU A1051 HOH A1434 SITE 2 AC2 5 HOH A1530 SITE 1 AC3 5 GLU B 892 ASP B 894 GLU B 895 HOH B1442 SITE 2 AC3 5 HOH B1505 SITE 1 AC4 5 THR B 830 ALA B 832 GLU B1051 HOH B1422 SITE 2 AC4 5 HOH B1509 CRYST1 101.980 50.850 105.340 90.00 90.13 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009806 0.000000 0.000022 0.00000 SCALE2 0.000000 0.019666 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009493 0.00000