HEADER MEMBRANE PROTEIN/INHIBITOR 25-APR-18 6D7V TITLE CRYSTAL STRUCTURE OF RAT TRPV6*- IN COMPLEX WITH BROMINATED 2- TITLE 2 AMINOETHOXYDIPHENYL BORATE (2-APB-BR) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL SUBFAMILY V COMPND 3 MEMBER 6; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: TRPV6,CALCIUM TRANSPORT PROTEIN 1,CAT1,EPITHELIAL CALCIUM COMPND 6 CHANNEL 2,ECAC2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: TRPV6; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS ION CHANNELS, TRANSPORTER, CALCIUM CHANNEL, EPITHELIAL CALCIUM KEYWDS 2 CHANNEL, MEMBRANE PROTEIN, MEMBRANE PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.K.SINGH,K.SAOTOME,L.L.MCGOLDRICK,A.I.SOBOLEVSKY REVDAT 3 04-OCT-23 6D7V 1 REMARK REVDAT 2 18-DEC-19 6D7V 1 REMARK REVDAT 1 18-JUL-18 6D7V 0 JRNL AUTH A.K.SINGH,K.SAOTOME,L.L.MCGOLDRICK,A.I.SOBOLEVSKY JRNL TITL STRUCTURAL BASES OF TRP CHANNEL TRPV6 ALLOSTERIC MODULATION JRNL TITL 2 BY 2-APB. JRNL REF NAT COMMUN V. 9 2465 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29941865 JRNL DOI 10.1038/S41467-018-04828-Y REMARK 2 REMARK 2 RESOLUTION. 4.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 15506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.305 REMARK 3 R VALUE (WORKING SET) : 0.304 REMARK 3 FREE R VALUE : 0.315 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.9295 - 9.5176 0.99 1274 138 0.2585 0.2858 REMARK 3 2 9.5176 - 7.5741 1.00 1253 143 0.2554 0.2388 REMARK 3 3 7.5741 - 6.6225 1.00 1287 144 0.3059 0.3342 REMARK 3 4 6.6225 - 6.0196 1.00 1280 140 0.3355 0.3500 REMARK 3 5 6.0196 - 5.5896 1.00 1268 140 0.3602 0.3191 REMARK 3 6 5.5896 - 5.2609 1.00 1261 140 0.3357 0.3189 REMARK 3 7 5.2609 - 4.9981 0.99 1277 138 0.3608 0.4008 REMARK 3 8 4.9981 - 4.7809 0.99 1277 142 0.3564 0.3784 REMARK 3 9 4.7809 - 4.5972 0.99 1248 141 0.3895 0.4302 REMARK 3 10 4.5972 - 4.4388 1.00 1268 140 0.3864 0.3890 REMARK 3 11 4.4388 - 4.3002 0.99 1270 137 0.4117 0.4524 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.870 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 41.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4852 REMARK 3 ANGLE : 0.568 6588 REMARK 3 CHIRALITY : 0.038 748 REMARK 3 PLANARITY : 0.004 832 REMARK 3 DIHEDRAL : 12.126 2874 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6D7V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000234138. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15506 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 16.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.62 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5WO7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-24% PEG 350 MME, 50 MM NACL, AND 50 REMARK 280 MM TRIS-HCL PH 8.0-8.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 72.17500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 72.17500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 72.17500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 72.17500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 72.17500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.17500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 72.17500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.17500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 106780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -271.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -144.35000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -72.17500 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 72.17500 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -72.17500 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -72.17500 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 702 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 TRP A 3 REMARK 465 SER A 4 REMARK 465 LEU A 5 REMARK 465 PRO A 6 REMARK 465 LYS A 7 REMARK 465 GLU A 8 REMARK 465 LYS A 9 REMARK 465 GLY A 10 REMARK 465 LEU A 11 REMARK 465 ILE A 12 REMARK 465 LEU A 13 REMARK 465 CYS A 14 REMARK 465 LEU A 15 REMARK 465 TRP A 16 REMARK 465 ASN A 17 REMARK 465 LYS A 18 REMARK 465 PHE A 19 REMARK 465 CYS A 20 REMARK 465 ARG A 21 REMARK 465 TRP A 22 REMARK 465 PHE A 23 REMARK 465 HIS A 24 REMARK 465 ARG A 25 REMARK 465 ARG A 26 REMARK 465 GLU A 27 REMARK 465 PRO A 404 REMARK 465 ASP A 405 REMARK 465 ILE A 406 REMARK 465 PHE A 407 REMARK 465 ARG A 408 REMARK 465 LEU A 409 REMARK 465 GLY A 410 REMARK 465 VAL A 411 REMARK 465 THR A 412 REMARK 465 ARG A 413 REMARK 465 PHE A 414 REMARK 465 PHE A 415 REMARK 465 GLY A 416 REMARK 465 GLN A 417 REMARK 465 THR A 418 REMARK 465 ILE A 419 REMARK 465 LEU A 420 REMARK 465 GLY A 421 REMARK 465 LEU A 638 REMARK 465 ASN A 639 REMARK 465 ARG A 640 REMARK 465 GLN A 641 REMARK 465 ARG A 642 REMARK 465 ILE A 643 REMARK 465 ARG A 644 REMARK 465 ARG A 645 REMARK 465 TYR A 646 REMARK 465 ALA A 647 REMARK 465 GLN A 648 REMARK 465 ALA A 649 REMARK 465 PHE A 650 REMARK 465 GLN A 651 REMARK 465 GLN A 652 REMARK 465 GLN A 653 REMARK 465 ASP A 654 REMARK 465 ASP A 655 REMARK 465 LEU A 656 REMARK 465 TYR A 657 REMARK 465 SER A 658 REMARK 465 GLU A 659 REMARK 465 ASP A 660 REMARK 465 LEU A 661 REMARK 465 GLU A 662 REMARK 465 LYS A 663 REMARK 465 ASP A 664 REMARK 465 SER A 665 REMARK 465 GLY A 666 REMARK 465 GLU A 667 REMARK 465 LYS A 668 REMARK 465 LEU A 669 REMARK 465 VAL A 670 REMARK 465 PRO A 671 REMARK 465 ARG A 672 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 352 CG CD CE NZ REMARK 470 LYS A 370 CG CD CE NZ REMARK 470 TRP A 628 N REMARK 470 ASP A 637 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 288 OE1 GLU A 293 1.74 REMARK 500 O ASP A 287 CZ ARG A 605 1.96 REMARK 500 O ASP A 288 N SER A 290 1.98 REMARK 500 O ASP A 287 NH1 ARG A 605 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 289 N - CA - CB ANGL. DEV. = 36.1 DEGREES REMARK 500 GLN A 289 N - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 TYR A 323 CB - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 ARG A 354 CB - CA - C ANGL. DEV. = -12.8 DEGREES REMARK 500 ARG A 354 N - CA - C ANGL. DEV. = 18.0 DEGREES REMARK 500 ARG A 358 N - CA - CB ANGL. DEV. = 14.5 DEGREES REMARK 500 PHE A 471 N - CA - C ANGL. DEV. = -17.9 DEGREES REMARK 500 HIS A 581 N - CA - C ANGL. DEV. = -21.3 DEGREES REMARK 500 TRP A 582 N - CA - CB ANGL. DEV. = -18.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 73 39.29 -91.19 REMARK 500 MET A 78 36.05 -87.94 REMARK 500 ASP A 90 78.31 -55.49 REMARK 500 ASN A 91 76.24 -110.28 REMARK 500 ALA A 102 84.34 -153.43 REMARK 500 GLU A 116 95.65 -57.78 REMARK 500 THR A 119 -169.70 -120.48 REMARK 500 THR A 148 31.66 -89.56 REMARK 500 TYR A 161 110.88 -161.95 REMARK 500 SER A 175 81.58 -64.50 REMARK 500 ASP A 193 -156.93 -75.68 REMARK 500 LEU A 205 40.28 -100.83 REMARK 500 ASN A 208 70.82 -69.06 REMARK 500 TYR A 269 75.71 -105.62 REMARK 500 LEU A 279 71.34 59.17 REMARK 500 THR A 280 -76.33 -121.78 REMARK 500 SER A 284 48.37 -78.97 REMARK 500 ASP A 288 -75.51 -118.24 REMARK 500 TYR A 323 5.10 51.17 REMARK 500 TYR A 348 77.68 -119.28 REMARK 500 LYS A 352 135.18 -171.40 REMARK 500 PRO A 353 39.50 -82.16 REMARK 500 ARG A 354 73.15 62.41 REMARK 500 ASN A 357 -74.88 -37.16 REMARK 500 ARG A 358 -156.16 -154.86 REMARK 500 PRO A 361 -98.00 -64.32 REMARK 500 LEU A 366 79.53 -103.57 REMARK 500 TYR A 376 -159.50 -85.46 REMARK 500 VAL A 377 18.82 84.69 REMARK 500 PRO A 379 -73.68 -49.58 REMARK 500 LEU A 443 -9.62 68.47 REMARK 500 ARG A 469 108.57 -57.33 REMARK 500 PHE A 471 -129.60 54.32 REMARK 500 GLN A 472 -160.93 -78.81 REMARK 500 PRO A 543 75.02 -50.04 REMARK 500 ASP A 579 67.82 -113.24 REMARK 500 THR A 580 -22.49 -148.64 REMARK 500 HIS A 581 -169.87 -63.84 REMARK 500 PRO A 608 -169.58 -68.10 REMARK 500 TRP A 612 74.80 65.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 288 GLN A 289 127.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FYY A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 702 DBREF 6D7V A 1 669 UNP Q9R186 TRPV6_RAT 41 709 SEQADV 6D7V TYR A 62 UNP Q9R186 ILE 102 CONFLICT SEQADV 6D7V ASN A 92 UNP Q9R186 LEU 132 CONFLICT SEQADV 6D7V GLN A 96 UNP Q9R186 MET 136 CONFLICT SEQADV 6D7V VAL A 670 UNP Q9R186 EXPRESSION TAG SEQADV 6D7V PRO A 671 UNP Q9R186 EXPRESSION TAG SEQADV 6D7V ARG A 672 UNP Q9R186 EXPRESSION TAG SEQRES 1 A 672 MET GLY TRP SER LEU PRO LYS GLU LYS GLY LEU ILE LEU SEQRES 2 A 672 CYS LEU TRP ASN LYS PHE CYS ARG TRP PHE HIS ARG ARG SEQRES 3 A 672 GLU SER TRP ALA GLN SER ARG ASP GLU GLN ASN LEU LEU SEQRES 4 A 672 GLN GLN LYS ARG ILE TRP GLU SER PRO LEU LEU LEU ALA SEQRES 5 A 672 ALA LYS GLU ASN ASN VAL GLN ALA LEU TYR LYS LEU LEU SEQRES 6 A 672 LYS PHE GLU GLY CYS GLU VAL HIS GLN LYS GLY ALA MET SEQRES 7 A 672 GLY GLU THR ALA LEU HIS ILE ALA ALA LEU TYR ASP ASN SEQRES 8 A 672 ASN GLU ALA ALA GLN VAL LEU MET GLU ALA ALA PRO GLU SEQRES 9 A 672 LEU VAL PHE GLU PRO MET THR SER GLU LEU TYR GLU GLY SEQRES 10 A 672 GLN THR ALA LEU HIS ILE ALA VAL ILE ASN GLN ASN VAL SEQRES 11 A 672 ASN LEU VAL ARG ALA LEU LEU ALA ARG GLY ALA SER VAL SEQRES 12 A 672 SER ALA ARG ALA THR GLY SER VAL PHE HIS TYR ARG PRO SEQRES 13 A 672 HIS ASN LEU ILE TYR TYR GLY GLU HIS PRO LEU SER PHE SEQRES 14 A 672 ALA ALA CYS VAL GLY SER GLU GLU ILE VAL ARG LEU LEU SEQRES 15 A 672 ILE GLU HIS GLY ALA ASP ILE ARG ALA GLN ASP SER LEU SEQRES 16 A 672 GLY ASN THR VAL LEU HIS ILE LEU ILE LEU GLN PRO ASN SEQRES 17 A 672 LYS THR PHE ALA CYS GLN MET TYR ASN LEU LEU LEU SER SEQRES 18 A 672 TYR ASP GLY GLY ASP HIS LEU LYS SER LEU GLU LEU VAL SEQRES 19 A 672 PRO ASN ASN GLN GLY LEU THR PRO PHE LYS LEU ALA GLY SEQRES 20 A 672 VAL GLU GLY ASN ILE VAL MET PHE GLN HIS LEU MET GLN SEQRES 21 A 672 LYS ARG LYS HIS ILE GLN TRP THR TYR GLY PRO LEU THR SEQRES 22 A 672 SER THR LEU TYR ASP LEU THR GLU ILE ASP SER SER GLY SEQRES 23 A 672 ASP ASP GLN SER LEU LEU GLU LEU ILE VAL THR THR LYS SEQRES 24 A 672 LYS ARG GLU ALA ARG GLN ILE LEU ASP GLN THR PRO VAL SEQRES 25 A 672 LYS GLU LEU VAL SER LEU LYS TRP LYS ARG TYR GLY ARG SEQRES 26 A 672 PRO TYR PHE CYS VAL LEU GLY ALA ILE TYR VAL LEU TYR SEQRES 27 A 672 ILE ILE CYS PHE THR MET CYS CYS VAL TYR ARG PRO LEU SEQRES 28 A 672 LYS PRO ARG ILE THR ASN ARG THR ASN PRO ARG ASP ASN SEQRES 29 A 672 THR LEU LEU GLN GLN LYS LEU LEU GLN GLU ALA TYR VAL SEQRES 30 A 672 THR PRO LYS ASP ASP LEU ARG LEU VAL GLY GLU LEU VAL SEQRES 31 A 672 SER ILE VAL GLY ALA VAL ILE ILE LEU LEU VAL GLU ILE SEQRES 32 A 672 PRO ASP ILE PHE ARG LEU GLY VAL THR ARG PHE PHE GLY SEQRES 33 A 672 GLN THR ILE LEU GLY GLY PRO PHE HIS VAL ILE ILE VAL SEQRES 34 A 672 THR TYR ALA PHE MET VAL LEU VAL THR MET VAL MET ARG SEQRES 35 A 672 LEU THR ASN SER ASP GLY GLU VAL VAL PRO MET SER PHE SEQRES 36 A 672 ALA LEU VAL LEU GLY TRP CYS ASN VAL MET TYR PHE ALA SEQRES 37 A 672 ARG GLY PHE GLN MET LEU GLY PRO PHE THR ILE MET ILE SEQRES 38 A 672 GLN LYS MET ILE PHE GLY ASP LEU MET ARG PHE CYS TRP SEQRES 39 A 672 LEU MET ALA VAL VAL ILE LEU GLY PHE ALA SER ALA PHE SEQRES 40 A 672 TYR ILE ILE PHE GLN THR GLU ASP PRO ASP GLU LEU GLY SEQRES 41 A 672 HIS PHE TYR ASP TYR PRO MET ALA LEU PHE SER THR PHE SEQRES 42 A 672 GLU LEU PHE LEU THR ILE ILE ASP GLY PRO ALA ASN TYR SEQRES 43 A 672 ASP VAL ASP LEU PRO PHE MET TYR SER ILE THR TYR ALA SEQRES 44 A 672 ALA PHE ALA ILE ILE ALA THR LEU LEU MET LEU ASN LEU SEQRES 45 A 672 LEU ILE ALA MET MET GLY ASP THR HIS TRP ARG VAL ALA SEQRES 46 A 672 HIS GLU ARG ASP GLU LEU TRP ARG ALA GLN VAL VAL ALA SEQRES 47 A 672 THR THR VAL MET LEU GLU ARG LYS LEU PRO ARG CYS LEU SEQRES 48 A 672 TRP PRO ARG SER GLY ILE CYS GLY ARG GLU TYR GLY LEU SEQRES 49 A 672 GLY ASP ARG TRP PHE LEU ARG VAL GLU ASP ARG GLN ASP SEQRES 50 A 672 LEU ASN ARG GLN ARG ILE ARG ARG TYR ALA GLN ALA PHE SEQRES 51 A 672 GLN GLN GLN ASP ASP LEU TYR SER GLU ASP LEU GLU LYS SEQRES 52 A 672 ASP SER GLY GLU LYS LEU VAL PRO ARG HET FYY A 701 18 HET CA A 702 1 HETNAM FYY 2-AMINOETHYL (4-BROMOPHENYL)PHENYLBORINATE HETNAM CA CALCIUM ION FORMUL 2 FYY C14 H15 B BR N O FORMUL 3 CA CA 2+ HELIX 1 AA1 SER A 28 SER A 47 1 20 HELIX 2 AA2 SER A 47 GLU A 55 1 9 HELIX 3 AA3 ASN A 57 LYS A 66 1 10 HELIX 4 AA4 THR A 81 TYR A 89 1 9 HELIX 5 AA5 ASN A 91 ALA A 102 1 12 HELIX 6 AA6 THR A 119 ASN A 127 1 9 HELIX 7 AA7 ASN A 129 ARG A 139 1 11 HELIX 8 AA8 GLY A 149 HIS A 153 5 5 HELIX 9 AA9 HIS A 165 GLY A 174 1 10 HELIX 10 AB1 SER A 175 HIS A 185 1 11 HELIX 11 AB2 THR A 198 LEU A 203 1 6 HELIX 12 AB3 ILE A 204 GLN A 206 5 3 HELIX 13 AB4 ASN A 208 LEU A 219 1 12 HELIX 14 AB5 SER A 230 VAL A 234 5 5 HELIX 15 AB6 THR A 241 GLU A 249 1 9 HELIX 16 AB7 ASN A 251 GLN A 260 1 10 HELIX 17 AB8 LEU A 291 VAL A 296 1 6 HELIX 18 AB9 LYS A 300 ILE A 306 5 7 HELIX 19 AC1 GLN A 309 ARG A 322 1 14 HELIX 20 AC2 GLY A 324 TYR A 348 1 25 HELIX 21 AC3 VAL A 377 VAL A 401 1 25 HELIX 22 AC4 PRO A 423 ARG A 442 1 20 HELIX 23 AC5 VAL A 450 ASN A 463 1 14 HELIX 24 AC6 VAL A 464 ARG A 469 5 6 HELIX 25 AC7 LEU A 474 PHE A 486 1 13 HELIX 26 AC8 ASP A 488 PHE A 511 1 24 HELIX 27 AC9 PRO A 526 PHE A 536 1 11 HELIX 28 AD1 MET A 553 ALA A 575 1 23 HELIX 29 AD2 MET A 576 ASP A 579 5 4 HELIX 30 AD3 HIS A 581 LEU A 607 1 27 SHEET 1 AA1 4 LYS A 263 TYR A 269 0 SHEET 2 AA1 4 LEU A 272 TYR A 277 -1 O LEU A 276 N HIS A 264 SHEET 3 AA1 4 PHE A 629 ARG A 635 -1 O VAL A 632 N THR A 275 SHEET 4 AA1 4 ILE A 617 CYS A 618 -1 N ILE A 617 O PHE A 629 LINK O ASP A 287 NH2 ARG A 605 1555 1555 1.42 SITE 1 AC1 10 VAL A 401 GLU A 402 GLY A 422 PHE A 424 SITE 2 AC1 10 HIS A 425 ILE A 428 ASN A 463 TYR A 466 SITE 3 AC1 10 ARG A 469 MET A 602 SITE 1 AC2 1 ASP A 541 CRYST1 144.350 144.350 113.370 90.00 90.00 90.00 P 4 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006928 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006928 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008821 0.00000