HEADER SIGNALING PROTEIN 27-APR-18 6D8Z TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL GUANINE NUCLEOTIDE EXCHANGE FACTOR TITLE 2 MODULE OF HUMAN TRIO COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIPLE FUNCTIONAL DOMAIN PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 1960-2275; COMPND 5 SYNONYM: PTPRF-INTERACTING PROTEIN; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRIO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: 1960-2275; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMALC2H10T KEYWDS RHOGEF, DBL FAMILY MEMBER, DBL HOMOLOGY, PLECKSTRIN HOMOLOGY, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.BANDEKAR,J.J.TESMER REVDAT 6 04-OCT-23 6D8Z 1 REMARK REVDAT 5 25-MAY-22 6D8Z 1 TITLE REVDAT 4 04-DEC-19 6D8Z 1 REMARK REVDAT 3 06-MAR-19 6D8Z 1 JRNL REVDAT 2 27-FEB-19 6D8Z 1 JRNL REVDAT 1 20-FEB-19 6D8Z 0 JRNL AUTH S.J.BANDEKAR,N.ARANG,E.S.TULLY,B.A.TANG,B.L.BARTON,S.LI, JRNL AUTH 2 J.S.GUTKIND,J.J.G.TESMER JRNL TITL STRUCTURE OF THE C-TERMINAL GUANINE NUCLEOTIDE EXCHANGE JRNL TITL 2 FACTOR MODULE OF TRIO IN AN AUTOINHIBITED CONFORMATION JRNL TITL 3 REVEALS ITS ONCOGENIC POTENTIAL. JRNL REF SCI SIGNAL V. 12 2019 JRNL REFN ESSN 1937-9145 JRNL PMID 30783010 JRNL DOI 10.1126/SCISIGNAL.AAV2449 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 28787 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1504 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1862 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.3400 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7499 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.51000 REMARK 3 B22 (A**2) : -0.87000 REMARK 3 B33 (A**2) : 0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.369 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.356 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 39.035 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7641 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10258 ; 1.243 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 901 ; 5.070 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 386 ;39.276 ;23.860 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1499 ;15.425 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 61 ;14.069 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1119 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5683 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3622 ; 0.461 ; 3.354 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4517 ; 0.838 ; 5.028 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4019 ; 0.403 ; 3.373 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 10685 ; 2.509 ;44.401 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1967 A 2142 REMARK 3 ORIGIN FOR THE GROUP (A): -10.9220 -7.5680 -15.8650 REMARK 3 T TENSOR REMARK 3 T11: 0.1565 T22: 0.4166 REMARK 3 T33: 0.1008 T12: 0.0163 REMARK 3 T13: 0.0400 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 5.6369 L22: 4.4936 REMARK 3 L33: 6.3572 L12: -1.2281 REMARK 3 L13: 1.9428 L23: -0.9100 REMARK 3 S TENSOR REMARK 3 S11: 0.0512 S12: -0.1998 S13: -0.6680 REMARK 3 S21: -0.0880 S22: -0.0467 S23: 0.0825 REMARK 3 S31: 0.9337 S32: 0.3084 S33: -0.0045 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2143 A 2273 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3580 5.3690 6.3420 REMARK 3 T TENSOR REMARK 3 T11: 0.0283 T22: 0.6721 REMARK 3 T33: 0.0504 T12: -0.0389 REMARK 3 T13: 0.0081 T23: -0.0832 REMARK 3 L TENSOR REMARK 3 L11: 9.7619 L22: 4.4539 REMARK 3 L33: 8.1672 L12: -1.0999 REMARK 3 L13: 3.6560 L23: -0.4310 REMARK 3 S TENSOR REMARK 3 S11: 0.1393 S12: -1.0370 S13: 0.3212 REMARK 3 S21: 0.2424 S22: -0.0107 S23: -0.2611 REMARK 3 S31: -0.1257 S32: 0.1850 S33: -0.1286 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1959 B 2146 REMARK 3 ORIGIN FOR THE GROUP (A): -20.0810 9.8310 17.1460 REMARK 3 T TENSOR REMARK 3 T11: 0.0159 T22: 0.4356 REMARK 3 T33: 0.0334 T12: 0.0145 REMARK 3 T13: -0.0146 T23: 0.0514 REMARK 3 L TENSOR REMARK 3 L11: 3.0400 L22: 4.6478 REMARK 3 L33: 6.7288 L12: 0.2827 REMARK 3 L13: -0.7378 L23: 2.7383 REMARK 3 S TENSOR REMARK 3 S11: -0.0414 S12: 0.0813 S13: 0.2216 REMARK 3 S21: -0.2001 S22: -0.0912 S23: 0.2164 REMARK 3 S31: -0.1807 S32: 0.2353 S33: 0.1326 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2147 B 2272 REMARK 3 ORIGIN FOR THE GROUP (A): -35.5660 -10.3040 36.6260 REMARK 3 T TENSOR REMARK 3 T11: 0.1582 T22: 0.3322 REMARK 3 T33: 0.2795 T12: -0.0497 REMARK 3 T13: -0.0048 T23: 0.0878 REMARK 3 L TENSOR REMARK 3 L11: 5.8704 L22: 4.3801 REMARK 3 L33: 9.2371 L12: -0.3905 REMARK 3 L13: -1.3612 L23: 0.2964 REMARK 3 S TENSOR REMARK 3 S11: -0.0262 S12: -0.4283 S13: -0.5198 REMARK 3 S21: 0.0878 S22: 0.0019 S23: 0.5432 REMARK 3 S31: 0.4181 S32: -0.5064 S33: 0.0243 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1969 C 2146 REMARK 3 ORIGIN FOR THE GROUP (A): -21.1030 12.0490 -45.7630 REMARK 3 T TENSOR REMARK 3 T11: 0.1329 T22: 0.5443 REMARK 3 T33: 0.2216 T12: 0.1228 REMARK 3 T13: -0.0086 T23: 0.0444 REMARK 3 L TENSOR REMARK 3 L11: 6.8416 L22: 5.0113 REMARK 3 L33: 5.9728 L12: -3.2603 REMARK 3 L13: -3.2154 L23: 2.8362 REMARK 3 S TENSOR REMARK 3 S11: 0.1857 S12: 0.3525 S13: 1.1890 REMARK 3 S21: -0.1303 S22: 0.1179 S23: -0.4817 REMARK 3 S31: -0.8140 S32: -0.6829 S33: -0.3036 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2147 C 2273 REMARK 3 ORIGIN FOR THE GROUP (A): -36.2090 -2.6600 -23.3690 REMARK 3 T TENSOR REMARK 3 T11: 0.0954 T22: 0.5582 REMARK 3 T33: 0.0407 T12: -0.2002 REMARK 3 T13: 0.0007 T23: -0.0403 REMARK 3 L TENSOR REMARK 3 L11: 5.8659 L22: 3.8581 REMARK 3 L33: 9.0341 L12: -1.9363 REMARK 3 L13: -1.6789 L23: 1.5844 REMARK 3 S TENSOR REMARK 3 S11: 0.0837 S12: 0.0343 S13: -0.3072 REMARK 3 S21: -0.0696 S22: 0.0107 S23: 0.2420 REMARK 3 S31: 0.5720 S32: -0.8250 S33: -0.0944 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 6D8Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000234203. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30692 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 18.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.74600 REMARK 200 FOR SHELL : 1.238 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2RGN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 3350, 100MM HEPES PH 7.5, REMARK 280 HANGING DROP, 293K, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.59050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.21550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.89350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 91.21550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.59050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.89350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1957 REMARK 465 GLU A 1958 REMARK 465 PHE A 1959 REMARK 465 GLU A 1960 REMARK 465 GLU A 1961 REMARK 465 ARG A 1962 REMARK 465 LYS A 1963 REMARK 465 SER A 1964 REMARK 465 SER A 1965 REMARK 465 SER A 1966 REMARK 465 GLN A 2175 REMARK 465 ASP A 2176 REMARK 465 ALA A 2177 REMARK 465 GLY A 2178 REMARK 465 LEU A 2179 REMARK 465 LEU A 2180 REMARK 465 PRO A 2181 REMARK 465 ARG A 2274 REMARK 465 ASN A 2275 REMARK 465 GLY B 1957 REMARK 465 GLU B 1958 REMARK 465 ASP B 2176 REMARK 465 ALA B 2177 REMARK 465 GLY B 2178 REMARK 465 LEU B 2179 REMARK 465 LEU B 2180 REMARK 465 PRO B 2181 REMARK 465 GLN B 2273 REMARK 465 ARG B 2274 REMARK 465 ASN B 2275 REMARK 465 GLY C 1957 REMARK 465 GLU C 1958 REMARK 465 PHE C 1959 REMARK 465 GLU C 1960 REMARK 465 GLU C 1961 REMARK 465 ARG C 1962 REMARK 465 LYS C 1963 REMARK 465 SER C 1964 REMARK 465 SER C 1965 REMARK 465 SER C 1966 REMARK 465 LEU C 1967 REMARK 465 LYS C 1968 REMARK 465 ASP C 2176 REMARK 465 ALA C 2177 REMARK 465 GLY C 2178 REMARK 465 LEU C 2179 REMARK 465 LEU C 2180 REMARK 465 PRO C 2181 REMARK 465 ARG C 2274 REMARK 465 ASN C 2275 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A2029 -61.59 -136.14 REMARK 500 THR A2078 -94.06 -103.31 REMARK 500 PRO A2233 0.08 -69.78 REMARK 500 THR A2242 99.16 -68.81 REMARK 500 ASN A2272 -79.51 -88.75 REMARK 500 PHE B2029 -64.22 -140.46 REMARK 500 THR B2078 -92.30 -96.37 REMARK 500 PHE C2029 -56.32 -126.16 REMARK 500 THR C2078 -91.32 -106.50 REMARK 500 REMARK 500 REMARK: NULL DBREF 6D8Z A 1960 2275 UNP O75962 TRIO_HUMAN 1960 2275 DBREF 6D8Z B 1960 2275 UNP O75962 TRIO_HUMAN 1960 2275 DBREF 6D8Z C 1960 2275 UNP O75962 TRIO_HUMAN 1960 2275 SEQADV 6D8Z GLY A 1957 UNP O75962 CLONING ARTIFACT SEQADV 6D8Z GLU A 1958 UNP O75962 CLONING ARTIFACT SEQADV 6D8Z PHE A 1959 UNP O75962 CLONING ARTIFACT SEQADV 6D8Z GLY B 1957 UNP O75962 CLONING ARTIFACT SEQADV 6D8Z GLU B 1958 UNP O75962 CLONING ARTIFACT SEQADV 6D8Z PHE B 1959 UNP O75962 CLONING ARTIFACT SEQADV 6D8Z GLY C 1957 UNP O75962 CLONING ARTIFACT SEQADV 6D8Z GLU C 1958 UNP O75962 CLONING ARTIFACT SEQADV 6D8Z PHE C 1959 UNP O75962 CLONING ARTIFACT SEQRES 1 A 319 GLY GLU PHE GLU GLU ARG LYS SER SER SER LEU LYS ARG SEQRES 2 A 319 ARG HIS TYR VAL LEU GLN GLU LEU VAL GLU THR GLU ARG SEQRES 3 A 319 ASP TYR VAL ARG ASP LEU GLY TYR VAL VAL GLU GLY TYR SEQRES 4 A 319 MET ALA LEU MET LYS GLU ASP GLY VAL PRO ASP ASP MET SEQRES 5 A 319 LYS GLY LYS ASP LYS ILE VAL PHE GLY ASN ILE HIS GLN SEQRES 6 A 319 ILE TYR ASP TRP HIS ARG ASP PHE PHE LEU GLY GLU LEU SEQRES 7 A 319 GLU LYS CYS LEU GLU ASP PRO GLU LYS LEU GLY SER LEU SEQRES 8 A 319 PHE VAL LYS HIS GLU ARG ARG LEU HIS MET TYR ILE ALA SEQRES 9 A 319 TYR CYS GLN ASN LYS PRO LYS SER GLU HIS ILE VAL SER SEQRES 10 A 319 GLU TYR ILE ASP THR PHE PHE GLU ASP LEU LYS GLN ARG SEQRES 11 A 319 LEU GLY HIS ARG LEU GLN LEU THR ASP LEU LEU ILE LYS SEQRES 12 A 319 PRO VAL GLN ARG ILE MET LYS TYR GLN LEU LEU LEU LYS SEQRES 13 A 319 ASP PHE LEU LYS TYR SER LYS LYS ALA SER LEU ASP THR SEQRES 14 A 319 SER GLU LEU GLU ARG ALA VAL GLU VAL MET CYS ILE VAL SEQRES 15 A 319 PRO ARG ARG CYS ASN ASP MET MET ASN VAL GLY ARG LEU SEQRES 16 A 319 GLN GLY PHE ASP GLY LYS ILE VAL ALA GLN GLY LYS LEU SEQRES 17 A 319 LEU LEU GLN ASP THR PHE LEU VAL THR ASP GLN ASP ALA SEQRES 18 A 319 GLY LEU LEU PRO ARG CYS ARG GLU ARG ARG ILE PHE LEU SEQRES 19 A 319 PHE GLU GLN ILE VAL ILE PHE SER GLU PRO LEU ASP LYS SEQRES 20 A 319 LYS LYS GLY PHE SER MET PRO GLY PHE LEU PHE LYS ASN SEQRES 21 A 319 SER ILE LYS VAL SER CYS LEU CYS LEU GLU GLU ASN VAL SEQRES 22 A 319 GLU ASN ASP PRO CYS LYS PHE ALA LEU THR SER ARG THR SEQRES 23 A 319 GLY ASP VAL VAL GLU THR PHE ILE LEU HIS SER SER SER SEQRES 24 A 319 PRO SER VAL ARG GLN THR TRP ILE HIS GLU ILE ASN GLN SEQRES 25 A 319 ILE LEU GLU ASN GLN ARG ASN SEQRES 1 B 319 GLY GLU PHE GLU GLU ARG LYS SER SER SER LEU LYS ARG SEQRES 2 B 319 ARG HIS TYR VAL LEU GLN GLU LEU VAL GLU THR GLU ARG SEQRES 3 B 319 ASP TYR VAL ARG ASP LEU GLY TYR VAL VAL GLU GLY TYR SEQRES 4 B 319 MET ALA LEU MET LYS GLU ASP GLY VAL PRO ASP ASP MET SEQRES 5 B 319 LYS GLY LYS ASP LYS ILE VAL PHE GLY ASN ILE HIS GLN SEQRES 6 B 319 ILE TYR ASP TRP HIS ARG ASP PHE PHE LEU GLY GLU LEU SEQRES 7 B 319 GLU LYS CYS LEU GLU ASP PRO GLU LYS LEU GLY SER LEU SEQRES 8 B 319 PHE VAL LYS HIS GLU ARG ARG LEU HIS MET TYR ILE ALA SEQRES 9 B 319 TYR CYS GLN ASN LYS PRO LYS SER GLU HIS ILE VAL SER SEQRES 10 B 319 GLU TYR ILE ASP THR PHE PHE GLU ASP LEU LYS GLN ARG SEQRES 11 B 319 LEU GLY HIS ARG LEU GLN LEU THR ASP LEU LEU ILE LYS SEQRES 12 B 319 PRO VAL GLN ARG ILE MET LYS TYR GLN LEU LEU LEU LYS SEQRES 13 B 319 ASP PHE LEU LYS TYR SER LYS LYS ALA SER LEU ASP THR SEQRES 14 B 319 SER GLU LEU GLU ARG ALA VAL GLU VAL MET CYS ILE VAL SEQRES 15 B 319 PRO ARG ARG CYS ASN ASP MET MET ASN VAL GLY ARG LEU SEQRES 16 B 319 GLN GLY PHE ASP GLY LYS ILE VAL ALA GLN GLY LYS LEU SEQRES 17 B 319 LEU LEU GLN ASP THR PHE LEU VAL THR ASP GLN ASP ALA SEQRES 18 B 319 GLY LEU LEU PRO ARG CYS ARG GLU ARG ARG ILE PHE LEU SEQRES 19 B 319 PHE GLU GLN ILE VAL ILE PHE SER GLU PRO LEU ASP LYS SEQRES 20 B 319 LYS LYS GLY PHE SER MET PRO GLY PHE LEU PHE LYS ASN SEQRES 21 B 319 SER ILE LYS VAL SER CYS LEU CYS LEU GLU GLU ASN VAL SEQRES 22 B 319 GLU ASN ASP PRO CYS LYS PHE ALA LEU THR SER ARG THR SEQRES 23 B 319 GLY ASP VAL VAL GLU THR PHE ILE LEU HIS SER SER SER SEQRES 24 B 319 PRO SER VAL ARG GLN THR TRP ILE HIS GLU ILE ASN GLN SEQRES 25 B 319 ILE LEU GLU ASN GLN ARG ASN SEQRES 1 C 319 GLY GLU PHE GLU GLU ARG LYS SER SER SER LEU LYS ARG SEQRES 2 C 319 ARG HIS TYR VAL LEU GLN GLU LEU VAL GLU THR GLU ARG SEQRES 3 C 319 ASP TYR VAL ARG ASP LEU GLY TYR VAL VAL GLU GLY TYR SEQRES 4 C 319 MET ALA LEU MET LYS GLU ASP GLY VAL PRO ASP ASP MET SEQRES 5 C 319 LYS GLY LYS ASP LYS ILE VAL PHE GLY ASN ILE HIS GLN SEQRES 6 C 319 ILE TYR ASP TRP HIS ARG ASP PHE PHE LEU GLY GLU LEU SEQRES 7 C 319 GLU LYS CYS LEU GLU ASP PRO GLU LYS LEU GLY SER LEU SEQRES 8 C 319 PHE VAL LYS HIS GLU ARG ARG LEU HIS MET TYR ILE ALA SEQRES 9 C 319 TYR CYS GLN ASN LYS PRO LYS SER GLU HIS ILE VAL SER SEQRES 10 C 319 GLU TYR ILE ASP THR PHE PHE GLU ASP LEU LYS GLN ARG SEQRES 11 C 319 LEU GLY HIS ARG LEU GLN LEU THR ASP LEU LEU ILE LYS SEQRES 12 C 319 PRO VAL GLN ARG ILE MET LYS TYR GLN LEU LEU LEU LYS SEQRES 13 C 319 ASP PHE LEU LYS TYR SER LYS LYS ALA SER LEU ASP THR SEQRES 14 C 319 SER GLU LEU GLU ARG ALA VAL GLU VAL MET CYS ILE VAL SEQRES 15 C 319 PRO ARG ARG CYS ASN ASP MET MET ASN VAL GLY ARG LEU SEQRES 16 C 319 GLN GLY PHE ASP GLY LYS ILE VAL ALA GLN GLY LYS LEU SEQRES 17 C 319 LEU LEU GLN ASP THR PHE LEU VAL THR ASP GLN ASP ALA SEQRES 18 C 319 GLY LEU LEU PRO ARG CYS ARG GLU ARG ARG ILE PHE LEU SEQRES 19 C 319 PHE GLU GLN ILE VAL ILE PHE SER GLU PRO LEU ASP LYS SEQRES 20 C 319 LYS LYS GLY PHE SER MET PRO GLY PHE LEU PHE LYS ASN SEQRES 21 C 319 SER ILE LYS VAL SER CYS LEU CYS LEU GLU GLU ASN VAL SEQRES 22 C 319 GLU ASN ASP PRO CYS LYS PHE ALA LEU THR SER ARG THR SEQRES 23 C 319 GLY ASP VAL VAL GLU THR PHE ILE LEU HIS SER SER SER SEQRES 24 C 319 PRO SER VAL ARG GLN THR TRP ILE HIS GLU ILE ASN GLN SEQRES 25 C 319 ILE LEU GLU ASN GLN ARG ASN FORMUL 4 HOH *26(H2 O) HELIX 1 AA1 LEU A 1967 GLU A 1993 1 27 HELIX 2 AA2 GLY A 1994 GLY A 2003 1 10 HELIX 3 AA3 PRO A 2005 LYS A 2009 5 5 HELIX 4 AA4 LYS A 2011 GLY A 2017 1 7 HELIX 5 AA5 ASN A 2018 PHE A 2029 1 12 HELIX 6 AA6 PHE A 2029 LYS A 2036 1 8 HELIX 7 AA7 CYS A 2037 GLU A 2039 5 3 HELIX 8 AA8 ASP A 2040 PRO A 2041 5 2 HELIX 9 AA9 GLU A 2042 HIS A 2051 1 10 HELIX 10 AB1 ARG A 2053 LEU A 2055 5 3 HELIX 11 AB2 HIS A 2056 ILE A 2076 1 21 HELIX 12 AB3 THR A 2078 GLY A 2088 1 11 HELIX 13 AB4 GLN A 2092 ALA A 2121 1 30 HELIX 14 AB5 THR A 2125 GLY A 2149 1 25 HELIX 15 AB6 ILE A 2158 GLY A 2162 5 5 HELIX 16 AB7 SER A 2255 GLU A 2271 1 17 HELIX 17 AB8 SER B 1964 GLU B 1993 1 30 HELIX 18 AB9 GLY B 1994 ASP B 2002 1 9 HELIX 19 AC1 LYS B 2011 GLY B 2017 1 7 HELIX 20 AC2 ASN B 2018 PHE B 2029 1 12 HELIX 21 AC3 PHE B 2029 LYS B 2036 1 8 HELIX 22 AC4 CYS B 2037 GLU B 2039 5 3 HELIX 23 AC5 ASP B 2040 PRO B 2041 5 2 HELIX 24 AC6 GLU B 2042 HIS B 2051 1 10 HELIX 25 AC7 ARG B 2053 LEU B 2055 5 3 HELIX 26 AC8 HIS B 2056 ILE B 2076 1 21 HELIX 27 AC9 THR B 2078 GLY B 2088 1 11 HELIX 28 AD1 GLN B 2092 ILE B 2098 1 7 HELIX 29 AD2 ILE B 2098 ALA B 2121 1 24 HELIX 30 AD3 THR B 2125 ARG B 2150 1 26 HELIX 31 AD4 ILE B 2158 GLY B 2162 5 5 HELIX 32 AD5 SER B 2255 GLU B 2271 1 17 HELIX 33 AD6 ARG C 1970 GLU C 1993 1 24 HELIX 34 AD7 GLY C 1994 GLY C 2003 1 10 HELIX 35 AD8 PRO C 2005 LYS C 2009 5 5 HELIX 36 AD9 LYS C 2011 GLY C 2017 1 7 HELIX 37 AE1 ASN C 2018 PHE C 2029 1 12 HELIX 38 AE2 PHE C 2029 CYS C 2037 1 9 HELIX 39 AE3 LEU C 2038 GLU C 2039 5 2 HELIX 40 AE4 ASP C 2040 PRO C 2041 5 2 HELIX 41 AE5 GLU C 2042 HIS C 2051 1 10 HELIX 42 AE6 ARG C 2053 LEU C 2055 5 3 HELIX 43 AE7 HIS C 2056 ILE C 2076 1 21 HELIX 44 AE8 THR C 2078 GLY C 2088 1 11 HELIX 45 AE9 GLN C 2092 ILE C 2098 1 7 HELIX 46 AF1 ILE C 2098 ALA C 2121 1 24 HELIX 47 AF2 THR C 2125 GLY C 2149 1 25 HELIX 48 AF3 ILE C 2158 GLY C 2162 5 5 HELIX 49 AF4 SER C 2255 GLU C 2271 1 17 SHEET 1 AA1 8 LEU A2151 GLN A2152 0 SHEET 2 AA1 8 PHE A2212 LYS A2219 1 O PHE A2212 N GLN A2152 SHEET 3 AA1 8 ILE A2194 PRO A2200 -1 N GLU A2199 O LEU A2213 SHEET 4 AA1 8 ARG A2184 PHE A2191 -1 N ARG A2187 O SER A2198 SHEET 5 AA1 8 LEU A2164 THR A2173 -1 N LEU A2165 O LEU A2190 SHEET 6 AA1 8 VAL A2245 HIS A2252 -1 O HIS A2252 N LEU A2171 SHEET 7 AA1 8 LYS A2235 THR A2242 -1 N PHE A2236 O LEU A2251 SHEET 8 AA1 8 LEU A2223 GLU A2226 -1 N GLU A2226 O ALA A2237 SHEET 1 AA2 8 LEU B2151 GLN B2152 0 SHEET 2 AA2 8 PHE B2212 LYS B2219 1 O PHE B2212 N GLN B2152 SHEET 3 AA2 8 ILE B2194 PRO B2200 -1 N GLU B2199 O LEU B2213 SHEET 4 AA2 8 ARG B2184 PHE B2191 -1 N ARG B2187 O SER B2198 SHEET 5 AA2 8 LEU B2164 ASP B2174 -1 N LEU B2165 O LEU B2190 SHEET 6 AA2 8 VAL B2245 HIS B2252 -1 O HIS B2252 N LEU B2171 SHEET 7 AA2 8 LYS B2235 THR B2242 -1 N PHE B2236 O LEU B2251 SHEET 8 AA2 8 LEU B2223 GLU B2226 -1 N GLU B2226 O ALA B2237 SHEET 1 AA3 8 LEU C2151 GLN C2152 0 SHEET 2 AA3 8 PHE C2212 LYS C2219 1 O PHE C2212 N GLN C2152 SHEET 3 AA3 8 ILE C2194 PRO C2200 -1 N PHE C2197 O ASN C2216 SHEET 4 AA3 8 ARG C2184 PHE C2191 -1 N ARG C2187 O SER C2198 SHEET 5 AA3 8 LEU C2164 ASP C2174 -1 N LEU C2165 O LEU C2190 SHEET 6 AA3 8 VAL C2245 HIS C2252 -1 O ILE C2250 N THR C2173 SHEET 7 AA3 8 LYS C2235 THR C2242 -1 N PHE C2236 O LEU C2251 SHEET 8 AA3 8 LEU C2223 GLU C2226 -1 N CYS C2224 O THR C2239 CRYST1 59.181 95.787 182.431 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016897 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010440 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005482 0.00000