HEADER TRANSFERASE 01-MAY-18 6DA0 TITLE CRYSTAL STRUCTURE OF GLUCOKINASE (NFHK) FROM NAEGLERIA FOWLERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOKINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.1.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NAEGLERIA FOWLERI; SOURCE 3 ORGANISM_TAXID: 5763; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: NAFOA.19900.A.B11 KEYWDS SSGCID, STRUCTURAL GENOMICS, NAEGLERIA FOWLERI, GLUCOKINASE, NFHK, KEYWDS 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 04-OCT-23 6DA0 1 HETSYN REVDAT 3 29-JUL-20 6DA0 1 COMPND REMARK HETNAM SITE REVDAT 2 18-DEC-19 6DA0 1 JRNL REVDAT 1 09-MAY-18 6DA0 0 JRNL AUTH J.E.MILANES,J.SURYADI,J.ABENDROTH,W.C.VAN VOORHIS, JRNL AUTH 2 K.F.BARRETT,D.M.DRANOW,I.Q.PHAN,S.L.PATRICK,S.D.ROZEMA, JRNL AUTH 3 M.M.KHALIFA,J.E.GOLDEN,J.C.MORRIS JRNL TITL ENZYMATIC AND STRUCTURAL CHARACTERIZATION OF THENAEGLERIA JRNL TITL 2 FOWLERIGLUCOKINASE. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 63 2019 JRNL REFN ESSN 1098-6596 JRNL PMID 30783001 JRNL DOI 10.1128/AAC.02410-18 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 36357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.540 REMARK 3 FREE R VALUE TEST SET COUNT : 2015 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.2855 - 5.2998 0.97 2555 162 0.1657 0.2051 REMARK 3 2 5.2998 - 4.2076 0.99 2491 147 0.1316 0.1547 REMARK 3 3 4.2076 - 3.6760 1.00 2477 145 0.1269 0.1564 REMARK 3 4 3.6760 - 3.3400 1.00 2473 139 0.1362 0.1480 REMARK 3 5 3.3400 - 3.1007 1.00 2449 145 0.1521 0.1787 REMARK 3 6 3.1007 - 2.9179 1.00 2480 132 0.1584 0.1926 REMARK 3 7 2.9179 - 2.7718 1.00 2426 141 0.1621 0.1936 REMARK 3 8 2.7718 - 2.6511 1.00 2434 144 0.1711 0.2237 REMARK 3 9 2.6511 - 2.5491 1.00 2437 136 0.1642 0.2222 REMARK 3 10 2.5491 - 2.4611 1.00 2428 142 0.1723 0.1929 REMARK 3 11 2.4611 - 2.3842 1.00 2429 147 0.1699 0.2247 REMARK 3 12 2.3842 - 2.3160 1.00 2425 160 0.1777 0.2350 REMARK 3 13 2.3160 - 2.2551 1.00 2429 134 0.1871 0.2314 REMARK 3 14 2.2551 - 2.2000 1.00 2409 141 0.2057 0.2443 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 151 THROUGH 400 ) REMARK 3 ORIGIN FOR THE GROUP (A): 70.7272 50.3758 -2.3221 REMARK 3 T TENSOR REMARK 3 T11: 0.1716 T22: 0.2165 REMARK 3 T33: 0.2163 T12: 0.0273 REMARK 3 T13: 0.0271 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.6873 L22: 0.9208 REMARK 3 L33: 1.1795 L12: 0.5700 REMARK 3 L13: 0.2573 L23: -0.0634 REMARK 3 S TENSOR REMARK 3 S11: -0.0244 S12: 0.1131 S13: -0.1024 REMARK 3 S21: -0.1062 S22: 0.0006 S23: -0.2131 REMARK 3 S31: 0.0860 S32: 0.2584 S33: 0.0254 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 89.0939 57.2271 18.9861 REMARK 3 T TENSOR REMARK 3 T11: 0.1898 T22: 0.3579 REMARK 3 T33: 0.1767 T12: -0.0192 REMARK 3 T13: 0.0108 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 6.8618 L22: 1.5706 REMARK 3 L33: 1.2265 L12: 0.9255 REMARK 3 L13: -0.4061 L23: -0.0220 REMARK 3 S TENSOR REMARK 3 S11: 0.0572 S12: -0.5327 S13: 0.1881 REMARK 3 S21: 0.0492 S22: -0.0763 S23: -0.1178 REMARK 3 S31: -0.0586 S32: 0.2370 S33: 0.0152 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DA0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234241. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36362 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 45.276 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.108 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.57200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, MORDA, PARROT REMARK 200 STARTING MODEL: PDB ENTRIES 5BRH & 1SZ2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13.78 MG/ML NAFOA.19900.A.B11.PW39443 REMARK 280 + 2 MM MAGNESIUM CHLORIDE, AMPPNP, BETA-D-GLUCOSE + MOLECULAR REMARK 280 DIMENSIONS MORPHEUS SCREEN, C8 (12.5% W/V PEG1000, 12.5% W/V REMARK 280 PEG3350, 12.5% V/V MPD, 30 MM SODIUM NITRATE, 0.3 M DISODIUM REMARK 280 HYDROGEN PHOSPHATE, 0.3 M AMMONIUM SULFATE, 100 MM BICINE/TRIZMA REMARK 280 BASE, PH 8.5), CRYOPROTECTION: DIRECT, TRAY 299931C8, PUCK VSZ1- REMARK 280 5, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 101.24000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 101.24000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 34.39500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 101.24000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 101.24000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 34.39500 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 101.24000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 101.24000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 34.39500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 101.24000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 101.24000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 34.39500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 101.24000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 101.24000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 34.39500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 101.24000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 101.24000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 34.39500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 101.24000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 101.24000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 34.39500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 101.24000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 101.24000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 34.39500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 664 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 792 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 GLU A 3 REMARK 465 ARG A 4 REMARK 465 MET A 5 REMARK 465 ILE A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 ARG A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 MET A 14 REMARK 465 SER A 15 REMARK 465 SER A 16 REMARK 465 SER A 17 REMARK 465 THR A 18 REMARK 465 SER A 19 REMARK 465 SER A 20 REMARK 465 GLU A 21 REMARK 465 GLU A 22 REMARK 465 GLY A 401 REMARK 465 SER A 402 REMARK 465 THR A 403 REMARK 465 THR A 404 REMARK 465 MET A 405 REMARK 465 VAL A 406 REMARK 465 ASP A 407 REMARK 465 GLU A 408 REMARK 465 LYS A 409 REMARK 465 PRO A 410 REMARK 465 LYS A 411 REMARK 465 ALA A 412 REMARK 465 GLY A 413 REMARK 465 LEU A 414 REMARK 465 LYS A 415 REMARK 465 ASP A 416 REMARK 465 VAL A 417 REMARK 465 LEU A 418 REMARK 465 SER A 419 REMARK 465 VAL A 420 REMARK 465 ALA A 421 REMARK 465 ILE A 422 REMARK 465 PRO A 423 REMARK 465 THR A 424 REMARK 465 ALA A 425 REMARK 465 PHE A 426 REMARK 465 PHE A 427 REMARK 465 SER A 428 REMARK 465 VAL A 429 REMARK 465 LEU A 430 REMARK 465 SER A 431 REMARK 465 PHE A 432 REMARK 465 PHE A 433 REMARK 465 THR A 434 REMARK 465 ALA A 435 REMARK 465 LYS A 436 REMARK 465 ASN A 437 REMARK 465 LEU A 438 REMARK 465 TYR A 439 REMARK 465 GLU A 440 REMARK 465 LYS A 441 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 183 CG CD1 CD2 REMARK 470 LYS A 221 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 160 OD1 ASN A 386 2.05 REMARK 500 OE1 GLU A 352 O HOH A 601 2.14 REMARK 500 OH TYR A 138 OD1 ASN A 151 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 70 -49.32 70.84 REMARK 500 ASP A 71 17.97 -145.06 REMARK 500 ASP A 74 -137.97 -103.91 REMARK 500 ASN A 84 21.82 -140.82 REMARK 500 ASP A 133 63.85 -153.32 REMARK 500 TYR A 383 137.00 -172.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NAFOA.19900.A RELATED DB: TARGETTRACK DBREF 6DA0 A -7 441 PDB 6DA0 6DA0 -7 441 SEQRES 1 A 449 MET ALA HIS HIS HIS HIS HIS HIS MET PRO GLU ARG MET SEQRES 2 A 449 ILE SER SER SER SER ARG SER SER MET SER SER SER THR SEQRES 3 A 449 SER SER GLU GLU PRO LEU VAL ILE ASP GLU ASP PHE ILE SEQRES 4 A 449 ASN GLN VAL GLU LYS HIS TYR ARG LYS SER LEU LYS ASN SEQRES 5 A 449 ILE PRO PHE GLN TYR ILE VAL GLY VAL ASP VAL GLY ALA SEQRES 6 A 449 THR ASN THR ARG ILE ALA ILE GLN PHE ILE ILE ASN GLU SEQRES 7 A 449 ASP GLN ASP ASP GLU VAL PHE MET THR LYS PHE PRO CYS SEQRES 8 A 449 ASN THR SER THR HIS LEU ALA ASN TYR LEU ALA ALA TYR SEQRES 9 A 449 GLY LYS ALA MET VAL LYS ALA VAL GLY LYS GLY SER ALA SEQRES 10 A 449 ALA GLY SER ILE ALA LEU ALA GLY PRO VAL THR GLY ASP SEQRES 11 A 449 LYS VAL ARG ILE THR ASN TYR LYS GLU HIS ASP GLN GLU SEQRES 12 A 449 PHE PHE TYR SER GLN LEU PRO ASP THR LEU PHE PRO ALA SEQRES 13 A 449 SER LYS ASN THR PHE LEU ASN ASP LEU GLU ALA SER CYS SEQRES 14 A 449 TYR GLY ILE ILE ASN VAL GLY THR ASN ASN ARG LEU HIS SEQRES 15 A 449 GLU PHE PHE CYS PRO ILE ASP ALA LEU ASN ASN TYR ALA SEQRES 16 A 449 THR SER GLN THR VAL ARG LEU SER ASP THR SER GLU TYR SEQRES 17 A 449 ALA VAL LEU ALA MET GLY THR GLY LEU GLY THR GLY LEU SEQRES 18 A 449 ILE VAL GLY SER ALA GLY GLY LYS PHE ASN VAL ILE PRO SEQRES 19 A 449 LEU GLU ALA GLY HIS VAL HIS ILE ALA THR PRO GLY VAL SEQRES 20 A 449 ASN SER GLU HIS PHE LYS GLU GLU ARG GLU ARG ILE GLU SEQRES 21 A 449 PHE LEU SER GLN LYS ILE TYR GLY GLY ALA TYR PRO ILE SEQRES 22 A 449 GLU TYR GLU ASP ILE CYS SER GLY ARG GLY LEU GLU PHE SEQRES 23 A 449 CYS TYR GLU PHE GLU ILE ARG ASN ASP PRO ASN ALA VAL SEQRES 24 A 449 ARG LYS THR ALA SER GLN ILE ALA GLU SER TYR SER THR SEQRES 25 A 449 ASP THR TYR ALA ARG GLN ALA MET ILE THR HIS TYR ARG SEQRES 26 A 449 TYR LEU MET LYS ALA ALA GLN ASN ILE ALA VAL LEU ILE SEQRES 27 A 449 PRO THR CYS ARG GLY VAL PHE PHE ALA GLY ASP ASN GLN SEQRES 28 A 449 VAL PHE ASN GLU ASP PHE PHE LYS GLU HIS LEU SER ILE SEQRES 29 A 449 LEU GLN LYS GLU LEU PHE GLN THR HIS GLN LYS LYS HIS SEQRES 30 A 449 TRP LEU THR ASP LEU LYS PRO TYR ARG GLN MET LYS GLU SEQRES 31 A 449 TYR ASN PHE ASN VAL LYS GLY CYS LEU GLN LYS ALA ARG SEQRES 32 A 449 GLU LEU ALA GLN LEU GLY SER THR THR MET VAL ASP GLU SEQRES 33 A 449 LYS PRO LYS ALA GLY LEU LYS ASP VAL LEU SER VAL ALA SEQRES 34 A 449 ILE PRO THR ALA PHE PHE SER VAL LEU SER PHE PHE THR SEQRES 35 A 449 ALA LYS ASN LEU TYR GLU LYS HET BGC A 500 12 HET ANP A 501 31 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 BGC C6 H12 O6 FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 HOH *357(H2 O) HELIX 1 AA1 ASP A 27 LEU A 42 1 16 HELIX 2 AA2 THR A 85 GLY A 105 1 21 HELIX 3 AA3 LYS A 130 ASP A 133 5 4 HELIX 4 AA4 SER A 139 LEU A 141 5 3 HELIX 5 AA5 ASP A 156 ASN A 170 1 15 HELIX 6 AA6 ARG A 172 PHE A 176 1 5 HELIX 7 AA7 GLU A 228 VAL A 232 5 5 HELIX 8 AA8 HIS A 243 GLY A 260 1 18 HELIX 9 AA9 GLU A 266 ILE A 270 5 5 HELIX 10 AB1 SER A 272 ILE A 284 1 13 HELIX 11 AB2 THR A 294 TYR A 302 1 9 HELIX 12 AB3 ASP A 305 ILE A 330 1 26 HELIX 13 AB4 GLY A 340 ASN A 346 1 7 HELIX 14 AB5 ASN A 346 HIS A 353 1 8 HELIX 15 AB6 HIS A 353 THR A 364 1 12 HELIX 16 AB7 LYS A 367 LEU A 371 5 5 HELIX 17 AB8 ASN A 384 GLN A 399 1 16 SHEET 1 AA1 5 GLN A 72 PRO A 82 0 SHEET 2 AA1 5 ASN A 59 ILE A 68 -1 N ILE A 64 O PHE A 77 SHEET 3 AA1 5 PHE A 47 VAL A 55 -1 N GLN A 48 O ILE A 67 SHEET 4 AA1 5 ALA A 110 LEU A 115 1 O ALA A 114 N VAL A 55 SHEET 5 AA1 5 ASN A 151 ASN A 155 1 O LEU A 154 N ILE A 113 SHEET 1 AA2 3 VAL A 119 THR A 120 0 SHEET 2 AA2 3 LYS A 123 ARG A 125 -1 O LYS A 123 N THR A 120 SHEET 3 AA2 3 GLU A 135 PHE A 137 -1 O PHE A 136 N VAL A 124 SHEET 1 AA3 6 PHE A 177 PRO A 179 0 SHEET 2 AA3 6 LYS A 375 GLN A 379 -1 O ARG A 378 N CYS A 178 SHEET 3 AA3 6 CYS A 333 ALA A 339 1 N PHE A 338 O TYR A 377 SHEET 4 AA3 6 GLU A 199 MET A 205 1 N LEU A 203 O ALA A 339 SHEET 5 AA3 6 LEU A 209 SER A 217 -1 O ILE A 214 N TYR A 200 SHEET 6 AA3 6 LYS A 221 LEU A 227 -1 O ASN A 223 N VAL A 215 CRYST1 202.480 202.480 68.790 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004939 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004939 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014537 0.00000