HEADER OXIDOREDUCTASE 02-MAY-18 6DAV TITLE CRYSTAL STRUCTURE OF HUMAN DHFR COMPLEXED WITH NADP AND TITLE 2 N10FORMYLTETRAHYDROFOLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.5.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DHFR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURE-GUIDED DRUG DISCOVERY CONSORTIUM, DIHYDROFOLATE REDUCTASE, KEYWDS 2 HDHFR, NADP, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.J.MAYCLIN,D.M.DRANOW,D.D.LORIMER REVDAT 2 13-MAR-24 6DAV 1 REMARK REVDAT 1 16-MAY-18 6DAV 0 JRNL AUTH S.J.MAYCLIN,D.M.DRANOW,C.WALPOLE,D.D.LORIMER JRNL TITL CRYSTAL STRUCTURE OF HUMAN DHFR COMPLEXED WITH NADP AND JRNL TITL 2 N10FORMYLTETRAHYDROFOLATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 50797 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.6426 - 3.7342 0.97 3560 165 0.1359 0.1755 REMARK 3 2 3.7342 - 2.9643 0.92 3433 151 0.1421 0.1677 REMARK 3 3 2.9643 - 2.5897 0.92 3402 149 0.1650 0.2030 REMARK 3 4 2.5897 - 2.3530 0.92 3384 163 0.1736 0.2110 REMARK 3 5 2.3530 - 2.1844 0.93 3440 148 0.1777 0.2336 REMARK 3 6 2.1844 - 2.0556 0.94 3480 133 0.1836 0.2519 REMARK 3 7 2.0556 - 1.9527 0.94 3483 136 0.1785 0.2230 REMARK 3 8 1.9527 - 1.8677 0.95 3538 137 0.1867 0.2201 REMARK 3 9 1.8677 - 1.7958 0.95 3545 139 0.1870 0.2425 REMARK 3 10 1.7958 - 1.7338 0.95 3513 152 0.2065 0.2566 REMARK 3 11 1.7338 - 1.6796 0.95 3480 133 0.2195 0.3076 REMARK 3 12 1.6796 - 1.6316 0.94 3550 126 0.2298 0.3251 REMARK 3 13 1.6316 - 1.5886 0.94 3499 150 0.2553 0.2678 REMARK 3 14 1.5886 - 1.5499 0.94 3462 146 0.2647 0.2769 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0216 11.1841 22.9352 REMARK 3 T TENSOR REMARK 3 T11: 0.1258 T22: 0.1586 REMARK 3 T33: 0.1438 T12: -0.0217 REMARK 3 T13: 0.0159 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 6.0313 L22: 4.3523 REMARK 3 L33: 2.8644 L12: -1.7708 REMARK 3 L13: 1.6342 L23: -0.1325 REMARK 3 S TENSOR REMARK 3 S11: -0.1174 S12: 0.0072 S13: 0.0159 REMARK 3 S21: 0.0816 S22: 0.1356 S23: 0.1213 REMARK 3 S31: 0.0577 S32: 0.2348 S33: 0.0071 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0391 2.3441 14.4184 REMARK 3 T TENSOR REMARK 3 T11: 0.2930 T22: 0.1714 REMARK 3 T33: 0.2681 T12: -0.0135 REMARK 3 T13: 0.0046 T23: -0.0447 REMARK 3 L TENSOR REMARK 3 L11: 6.2076 L22: 5.8998 REMARK 3 L33: 7.4793 L12: -1.3074 REMARK 3 L13: 3.0929 L23: -6.3104 REMARK 3 S TENSOR REMARK 3 S11: 0.1076 S12: 0.1857 S13: -0.5417 REMARK 3 S21: -0.4156 S22: 0.0655 S23: 0.1185 REMARK 3 S31: 0.7954 S32: 0.0508 S33: -0.2156 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2015 12.1973 7.9925 REMARK 3 T TENSOR REMARK 3 T11: 0.1744 T22: 0.1595 REMARK 3 T33: 0.1204 T12: -0.0223 REMARK 3 T13: 0.0274 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 4.6941 L22: 3.4830 REMARK 3 L33: 3.9282 L12: 0.4335 REMARK 3 L13: 1.4598 L23: -0.0124 REMARK 3 S TENSOR REMARK 3 S11: -0.0611 S12: 0.2019 S13: -0.1422 REMARK 3 S21: -0.2659 S22: 0.0638 S23: -0.0252 REMARK 3 S31: 0.2067 S32: 0.0747 S33: -0.0107 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9952 22.7829 7.0979 REMARK 3 T TENSOR REMARK 3 T11: 0.3129 T22: 0.2922 REMARK 3 T33: 0.2521 T12: -0.0580 REMARK 3 T13: 0.0018 T23: 0.0711 REMARK 3 L TENSOR REMARK 3 L11: 8.7752 L22: 1.0318 REMARK 3 L33: 2.1487 L12: 1.1864 REMARK 3 L13: -1.6790 L23: -1.4886 REMARK 3 S TENSOR REMARK 3 S11: -0.0469 S12: 0.1944 S13: 0.4320 REMARK 3 S21: -0.2649 S22: 0.1328 S23: -0.2795 REMARK 3 S31: -0.2627 S32: 0.6558 S33: -0.1416 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4955 22.0998 2.0169 REMARK 3 T TENSOR REMARK 3 T11: 0.3228 T22: 0.2486 REMARK 3 T33: 0.2676 T12: -0.0365 REMARK 3 T13: -0.0227 T23: 0.0616 REMARK 3 L TENSOR REMARK 3 L11: 2.9151 L22: 4.1950 REMARK 3 L33: 2.3802 L12: 2.5671 REMARK 3 L13: 1.6908 L23: 0.8254 REMARK 3 S TENSOR REMARK 3 S11: -0.2314 S12: 0.2966 S13: 0.2338 REMARK 3 S21: -0.4681 S22: 0.1766 S23: 0.3865 REMARK 3 S31: -0.0391 S32: -0.0327 S33: 0.0672 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0675 20.0995 17.1198 REMARK 3 T TENSOR REMARK 3 T11: 0.1426 T22: 0.1617 REMARK 3 T33: 0.2755 T12: -0.0303 REMARK 3 T13: 0.0120 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 3.2990 L22: 8.9763 REMARK 3 L33: 9.3996 L12: 1.1702 REMARK 3 L13: 2.7101 L23: 4.4559 REMARK 3 S TENSOR REMARK 3 S11: -0.1781 S12: -0.0195 S13: 0.5632 REMARK 3 S21: -0.2910 S22: 0.0370 S23: 0.7620 REMARK 3 S31: -0.3534 S32: 0.0016 S33: 0.0543 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3962 14.3568 19.0543 REMARK 3 T TENSOR REMARK 3 T11: 0.1546 T22: 0.1725 REMARK 3 T33: 0.2942 T12: -0.0437 REMARK 3 T13: -0.0147 T23: 0.0353 REMARK 3 L TENSOR REMARK 3 L11: 5.9662 L22: 5.8090 REMARK 3 L33: 7.0423 L12: -4.1042 REMARK 3 L13: 2.6490 L23: -1.7803 REMARK 3 S TENSOR REMARK 3 S11: -0.0050 S12: 0.2379 S13: 0.5091 REMARK 3 S21: -0.1972 S22: -0.1440 S23: 0.1161 REMARK 3 S31: -0.2353 S32: 0.0542 S33: 0.1999 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7438 11.8964 30.9502 REMARK 3 T TENSOR REMARK 3 T11: 0.2305 T22: 0.3030 REMARK 3 T33: 0.1946 T12: 0.0303 REMARK 3 T13: 0.0097 T23: -0.0292 REMARK 3 L TENSOR REMARK 3 L11: 3.7541 L22: 3.4595 REMARK 3 L33: 4.6001 L12: 1.9571 REMARK 3 L13: -1.7679 L23: -3.8910 REMARK 3 S TENSOR REMARK 3 S11: 0.1060 S12: -0.4440 S13: -0.0861 REMARK 3 S21: 0.4776 S22: -0.0868 S23: -0.1224 REMARK 3 S31: -0.0698 S32: 0.2091 S33: -0.0060 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5748 18.4041 25.6760 REMARK 3 T TENSOR REMARK 3 T11: 0.1792 T22: 0.2826 REMARK 3 T33: 0.2707 T12: 0.0501 REMARK 3 T13: 0.0338 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 3.9698 L22: 9.1364 REMARK 3 L33: 8.9239 L12: 3.5634 REMARK 3 L13: 3.4773 L23: 0.6805 REMARK 3 S TENSOR REMARK 3 S11: -0.2378 S12: -0.6842 S13: 0.4238 REMARK 3 S21: 0.3012 S22: -0.0243 S23: 0.4663 REMARK 3 S31: -0.0625 S32: -0.7595 S33: 0.2074 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1879 4.5729 22.0911 REMARK 3 T TENSOR REMARK 3 T11: 0.2153 T22: 0.1804 REMARK 3 T33: 0.2442 T12: -0.0480 REMARK 3 T13: 0.0101 T23: 0.0378 REMARK 3 L TENSOR REMARK 3 L11: 6.6889 L22: 3.9227 REMARK 3 L33: 3.2243 L12: -3.2045 REMARK 3 L13: 2.7710 L23: -1.3362 REMARK 3 S TENSOR REMARK 3 S11: -0.0364 S12: -0.2370 S13: -0.3252 REMARK 3 S21: -0.1698 S22: 0.2075 S23: 0.4141 REMARK 3 S31: 0.2096 S32: -0.2728 S33: -0.2114 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.5374 29.7770 44.3435 REMARK 3 T TENSOR REMARK 3 T11: 0.1422 T22: 0.1377 REMARK 3 T33: 0.1205 T12: 0.0275 REMARK 3 T13: 0.0253 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 5.7476 L22: 2.5934 REMARK 3 L33: 4.4054 L12: -0.5686 REMARK 3 L13: 1.9438 L23: 0.1432 REMARK 3 S TENSOR REMARK 3 S11: -0.0392 S12: -0.0876 S13: -0.0217 REMARK 3 S21: -0.0206 S22: 0.1691 S23: 0.0955 REMARK 3 S31: 0.1068 S32: 0.2026 S33: -0.1156 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0469 17.5778 48.6084 REMARK 3 T TENSOR REMARK 3 T11: 0.3152 T22: 0.1894 REMARK 3 T33: 0.2089 T12: 0.0644 REMARK 3 T13: -0.0434 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.6966 L22: 1.9553 REMARK 3 L33: 2.9943 L12: -0.1313 REMARK 3 L13: 0.2601 L23: -1.4198 REMARK 3 S TENSOR REMARK 3 S11: 0.0206 S12: -0.1484 S13: -0.2070 REMARK 3 S21: -0.0116 S22: 0.1305 S23: 0.0046 REMARK 3 S31: 0.7517 S32: 0.2911 S33: -0.1326 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 61 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.5325 19.4735 59.0212 REMARK 3 T TENSOR REMARK 3 T11: 0.2347 T22: 0.1696 REMARK 3 T33: 0.2069 T12: -0.0314 REMARK 3 T13: 0.0157 T23: 0.0652 REMARK 3 L TENSOR REMARK 3 L11: 4.0022 L22: 3.6543 REMARK 3 L33: 6.6641 L12: 0.1302 REMARK 3 L13: 0.6723 L23: -0.5207 REMARK 3 S TENSOR REMARK 3 S11: 0.0866 S12: -0.2620 S13: -0.2573 REMARK 3 S21: -0.0064 S22: 0.1071 S23: 0.3833 REMARK 3 S31: 0.2852 S32: -0.4057 S33: -0.1715 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0711 14.6488 59.4735 REMARK 3 T TENSOR REMARK 3 T11: 0.3153 T22: 0.2795 REMARK 3 T33: 0.2188 T12: 0.0443 REMARK 3 T13: 0.0027 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 2.7323 L22: 3.0965 REMARK 3 L33: 3.1682 L12: -2.2271 REMARK 3 L13: 1.5525 L23: 0.3990 REMARK 3 S TENSOR REMARK 3 S11: 0.3514 S12: -0.0002 S13: -0.2476 REMARK 3 S21: -0.3216 S22: -0.1482 S23: 0.2436 REMARK 3 S31: 0.9534 S32: 0.3915 S33: -0.0414 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 119 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9246 29.6898 44.9781 REMARK 3 T TENSOR REMARK 3 T11: 0.1689 T22: 0.2361 REMARK 3 T33: 0.1952 T12: -0.0211 REMARK 3 T13: 0.0141 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 2.7303 L22: 2.2292 REMARK 3 L33: 4.1667 L12: -1.5018 REMARK 3 L13: -0.6333 L23: 0.1828 REMARK 3 S TENSOR REMARK 3 S11: 0.0190 S12: -0.2415 S13: 0.1365 REMARK 3 S21: 0.1225 S22: 0.0659 S23: -0.1992 REMARK 3 S31: 0.0544 S32: 0.6693 S33: -0.0568 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DAV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234256. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979490 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50838 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 2.309 REMARK 200 R MERGE (I) : 0.03100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.34 REMARK 200 R MERGE FOR SHELL (I) : 0.39500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: WIZARD 3/4 H10 (296175H10): 100 MM REMARK 280 TRIS BASE/ HYDROCHLORIC ACID PH 8.5, 30% (W/V) PEG3350, 30% (V/V) REMARK 280 2-PROPANOL, PROTEIN CONC. 28.74 MG/ML, PROTEIN BATCH ID XP819, REMARK 280 10 MM NADP, 3.75 MM BSI108214, SEEDED FROM 293949G10, REMARK 280 CRYOPROTECTED WITH 20% EG, PUCK IZS6-6, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 ARG B 29 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 45 CG CD OE1 OE2 REMARK 470 GLU B 151 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 111 -94.53 -97.84 REMARK 500 ASP B 111 -92.84 -96.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G3V A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G3V B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 204 DBREF 6DAV A 1 187 UNP P00374 DYR_HUMAN 1 187 DBREF 6DAV B 1 187 UNP P00374 DYR_HUMAN 1 187 SEQRES 1 A 187 MET VAL GLY SER LEU ASN CYS ILE VAL ALA VAL SER GLN SEQRES 2 A 187 ASN MET GLY ILE GLY LYS ASN GLY ASP LEU PRO TRP PRO SEQRES 3 A 187 PRO LEU ARG ASN GLU PHE ARG TYR PHE GLN ARG MET THR SEQRES 4 A 187 THR THR SER SER VAL GLU GLY LYS GLN ASN LEU VAL ILE SEQRES 5 A 187 MET GLY LYS LYS THR TRP PHE SER ILE PRO GLU LYS ASN SEQRES 6 A 187 ARG PRO LEU LYS GLY ARG ILE ASN LEU VAL LEU SER ARG SEQRES 7 A 187 GLU LEU LYS GLU PRO PRO GLN GLY ALA HIS PHE LEU SER SEQRES 8 A 187 ARG SER LEU ASP ASP ALA LEU LYS LEU THR GLU GLN PRO SEQRES 9 A 187 GLU LEU ALA ASN LYS VAL ASP MET VAL TRP ILE VAL GLY SEQRES 10 A 187 GLY SER SER VAL TYR LYS GLU ALA MET ASN HIS PRO GLY SEQRES 11 A 187 HIS LEU LYS LEU PHE VAL THR ARG ILE MET GLN ASP PHE SEQRES 12 A 187 GLU SER ASP THR PHE PHE PRO GLU ILE ASP LEU GLU LYS SEQRES 13 A 187 TYR LYS LEU LEU PRO GLU TYR PRO GLY VAL LEU SER ASP SEQRES 14 A 187 VAL GLN GLU GLU LYS GLY ILE LYS TYR LYS PHE GLU VAL SEQRES 15 A 187 TYR GLU LYS ASN ASP SEQRES 1 B 187 MET VAL GLY SER LEU ASN CYS ILE VAL ALA VAL SER GLN SEQRES 2 B 187 ASN MET GLY ILE GLY LYS ASN GLY ASP LEU PRO TRP PRO SEQRES 3 B 187 PRO LEU ARG ASN GLU PHE ARG TYR PHE GLN ARG MET THR SEQRES 4 B 187 THR THR SER SER VAL GLU GLY LYS GLN ASN LEU VAL ILE SEQRES 5 B 187 MET GLY LYS LYS THR TRP PHE SER ILE PRO GLU LYS ASN SEQRES 6 B 187 ARG PRO LEU LYS GLY ARG ILE ASN LEU VAL LEU SER ARG SEQRES 7 B 187 GLU LEU LYS GLU PRO PRO GLN GLY ALA HIS PHE LEU SER SEQRES 8 B 187 ARG SER LEU ASP ASP ALA LEU LYS LEU THR GLU GLN PRO SEQRES 9 B 187 GLU LEU ALA ASN LYS VAL ASP MET VAL TRP ILE VAL GLY SEQRES 10 B 187 GLY SER SER VAL TYR LYS GLU ALA MET ASN HIS PRO GLY SEQRES 11 B 187 HIS LEU LYS LEU PHE VAL THR ARG ILE MET GLN ASP PHE SEQRES 12 B 187 GLU SER ASP THR PHE PHE PRO GLU ILE ASP LEU GLU LYS SEQRES 13 B 187 TYR LYS LEU LEU PRO GLU TYR PRO GLY VAL LEU SER ASP SEQRES 14 B 187 VAL GLN GLU GLU LYS GLY ILE LYS TYR LYS PHE GLU VAL SEQRES 15 B 187 TYR GLU LYS ASN ASP HET NAP A 201 48 HET G3V A 202 34 HET EDO A 203 4 HET NAP B 201 48 HET G3V B 202 34 HET EDO B 203 4 HET EDO B 204 4 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM G3V N-(4-{[(2,4-DIAMINOPTERIDIN-6-YL) HETNAM 2 G3V METHYL](HYDROXYMETHYL)AMINO}BENZENE-1-CARBONYL)-L- HETNAM 3 G3V GLUTAMIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 G3V 2(C20 H22 N8 O6) FORMUL 5 EDO 3(C2 H6 O2) FORMUL 10 HOH *328(H2 O) HELIX 1 AA1 LEU A 28 THR A 41 1 14 HELIX 2 AA2 LYS A 55 ILE A 61 1 7 HELIX 3 AA3 PRO A 62 ARG A 66 5 5 HELIX 4 AA4 SER A 93 GLU A 102 1 10 HELIX 5 AA5 GLN A 103 ASN A 108 1 6 HELIX 6 AA6 GLY A 118 ASN A 127 1 10 HELIX 7 AA7 LEU B 28 THR B 41 1 14 HELIX 8 AA8 LYS B 55 PHE B 59 1 5 HELIX 9 AA9 SER B 60 ILE B 61 5 2 HELIX 10 AB1 PRO B 62 ARG B 66 5 5 HELIX 11 AB2 SER B 93 GLU B 102 1 10 HELIX 12 AB3 GLN B 103 ASN B 108 1 6 HELIX 13 AB4 GLY B 118 ASN B 127 1 10 SHEET 1 AA1 8 PHE A 89 SER A 91 0 SHEET 2 AA1 8 ARG A 71 LEU A 76 1 N VAL A 75 O PHE A 89 SHEET 3 AA1 8 GLN A 48 GLY A 54 1 N VAL A 51 O ILE A 72 SHEET 4 AA1 8 VAL A 110 ILE A 115 1 O TRP A 114 N LEU A 50 SHEET 5 AA1 8 LEU A 5 SER A 12 1 N ASN A 6 O ILE A 115 SHEET 6 AA1 8 HIS A 131 ILE A 139 1 O PHE A 135 N CYS A 7 SHEET 7 AA1 8 ILE A 176 ASN A 186 -1 O LYS A 179 N ARG A 138 SHEET 8 AA1 8 LYS A 158 LEU A 159 -1 N LYS A 158 O GLU A 184 SHEET 1 AA2 8 PHE A 89 SER A 91 0 SHEET 2 AA2 8 ARG A 71 LEU A 76 1 N VAL A 75 O PHE A 89 SHEET 3 AA2 8 GLN A 48 GLY A 54 1 N VAL A 51 O ILE A 72 SHEET 4 AA2 8 VAL A 110 ILE A 115 1 O TRP A 114 N LEU A 50 SHEET 5 AA2 8 LEU A 5 SER A 12 1 N ASN A 6 O ILE A 115 SHEET 6 AA2 8 HIS A 131 ILE A 139 1 O PHE A 135 N CYS A 7 SHEET 7 AA2 8 ILE A 176 ASN A 186 -1 O LYS A 179 N ARG A 138 SHEET 8 AA2 8 GLN A 171 GLU A 173 -1 N GLN A 171 O TYR A 178 SHEET 1 AA3 2 GLY A 16 GLY A 18 0 SHEET 2 AA3 2 THR A 147 PHE A 148 -1 O THR A 147 N ILE A 17 SHEET 1 AA4 8 PHE B 89 SER B 91 0 SHEET 2 AA4 8 ARG B 71 LEU B 76 1 N VAL B 75 O PHE B 89 SHEET 3 AA4 8 GLN B 48 GLY B 54 1 N VAL B 51 O ILE B 72 SHEET 4 AA4 8 VAL B 110 ILE B 115 1 O TRP B 114 N LEU B 50 SHEET 5 AA4 8 LEU B 5 VAL B 11 1 N ASN B 6 O ILE B 115 SHEET 6 AA4 8 HIS B 131 ILE B 139 1 O PHE B 135 N CYS B 7 SHEET 7 AA4 8 ILE B 176 ASN B 186 -1 O LYS B 179 N ARG B 138 SHEET 8 AA4 8 LYS B 158 LEU B 159 -1 N LYS B 158 O GLU B 184 SHEET 1 AA5 8 PHE B 89 SER B 91 0 SHEET 2 AA5 8 ARG B 71 LEU B 76 1 N VAL B 75 O PHE B 89 SHEET 3 AA5 8 GLN B 48 GLY B 54 1 N VAL B 51 O ILE B 72 SHEET 4 AA5 8 VAL B 110 ILE B 115 1 O TRP B 114 N LEU B 50 SHEET 5 AA5 8 LEU B 5 VAL B 11 1 N ASN B 6 O ILE B 115 SHEET 6 AA5 8 HIS B 131 ILE B 139 1 O PHE B 135 N CYS B 7 SHEET 7 AA5 8 ILE B 176 ASN B 186 -1 O LYS B 179 N ARG B 138 SHEET 8 AA5 8 GLN B 171 GLU B 173 -1 N GLN B 171 O TYR B 178 SHEET 1 AA6 2 GLY B 16 GLY B 18 0 SHEET 2 AA6 2 THR B 147 PHE B 148 -1 O THR B 147 N ILE B 17 CISPEP 1 ARG A 66 PRO A 67 0 -7.35 CISPEP 2 GLY A 117 GLY A 118 0 5.03 CISPEP 3 ARG B 66 PRO B 67 0 -7.33 CISPEP 4 GLY B 117 GLY B 118 0 4.54 SITE 1 AC1 36 VAL A 9 ALA A 10 ILE A 17 GLY A 18 SITE 2 AC1 36 GLY A 21 ASP A 22 LEU A 23 GLY A 54 SITE 3 AC1 36 LYS A 55 LYS A 56 THR A 57 SER A 60 SITE 4 AC1 36 LEU A 76 SER A 77 ARG A 78 GLU A 79 SITE 5 AC1 36 ARG A 92 SER A 93 VAL A 116 GLY A 118 SITE 6 AC1 36 SER A 119 SER A 120 VAL A 121 TYR A 122 SITE 7 AC1 36 GLU A 124 THR A 147 G3V A 202 HOH A 307 SITE 8 AC1 36 HOH A 316 HOH A 319 HOH A 325 HOH A 337 SITE 9 AC1 36 HOH A 343 HOH A 347 HOH A 357 HOH A 364 SITE 1 AC2 19 ILE A 8 VAL A 9 ALA A 10 LEU A 23 SITE 2 AC2 19 GLU A 31 PHE A 32 PHE A 35 GLN A 36 SITE 3 AC2 19 SER A 60 ILE A 61 ASN A 65 LEU A 68 SITE 4 AC2 19 ARG A 71 VAL A 116 THR A 137 NAP A 201 SITE 5 AC2 19 HOH A 338 HOH A 346 HOH A 390 SITE 1 AC3 6 LEU A 160 VAL A 166 SER A 168 PHE A 180 SITE 2 AC3 6 GLU A 181 VAL A 182 SITE 1 AC4 34 VAL B 9 ALA B 10 ILE B 17 GLY B 18 SITE 2 AC4 34 GLY B 21 ASP B 22 LEU B 23 GLY B 54 SITE 3 AC4 34 LYS B 55 LYS B 56 THR B 57 SER B 60 SITE 4 AC4 34 LEU B 76 SER B 77 ARG B 78 GLU B 79 SITE 5 AC4 34 ARG B 92 SER B 93 VAL B 116 GLY B 118 SITE 6 AC4 34 SER B 119 SER B 120 VAL B 121 TYR B 122 SITE 7 AC4 34 GLU B 124 THR B 147 G3V B 202 HOH B 309 SITE 8 AC4 34 HOH B 318 HOH B 322 HOH B 328 HOH B 349 SITE 9 AC4 34 HOH B 357 HOH B 382 SITE 1 AC5 17 ILE B 8 VAL B 9 ALA B 10 LEU B 23 SITE 2 AC5 17 GLU B 31 PHE B 32 PHE B 35 GLN B 36 SITE 3 AC5 17 SER B 60 ASN B 65 LEU B 68 ARG B 71 SITE 4 AC5 17 VAL B 116 NAP B 201 HOH B 351 HOH B 388 SITE 5 AC5 17 HOH B 408 SITE 1 AC6 5 LEU B 160 VAL B 166 PHE B 180 GLU B 181 SITE 2 AC6 5 VAL B 182 SITE 1 AC7 7 LEU B 80 LYS B 81 GLU B 82 PRO B 83 SITE 2 AC7 7 PRO B 84 HOH B 308 HOH B 383 CRYST1 37.090 42.740 72.290 91.05 101.88 120.00 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026961 0.015569 0.007977 0.00000 SCALE2 0.000000 0.027018 0.003902 0.00000 SCALE3 0.000000 0.000000 0.014282 0.00000