HEADER IMMUNE SYSTEM 02-MAY-18 6DBA TITLE CRYSTAL STRUCTURE OF VHH R303 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NANOBODY VHH R303; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMELUS DROMEDARIUS; SOURCE 3 ORGANISM_TAXID: 9838; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: TG1; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PSJF2H KEYWDS NANOBODY VHH LISTERIA, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.L.BROOKS,M.TORIDE KING,I.HUH REVDAT 6 04-OCT-23 6DBA 1 REMARK REVDAT 5 01-JAN-20 6DBA 1 REMARK REVDAT 4 06-NOV-19 6DBA 1 REMARK REVDAT 3 12-SEP-18 6DBA 1 JRNL REVDAT 2 25-JUL-18 6DBA 1 JRNL REVDAT 1 18-JUL-18 6DBA 0 JRNL AUTH M.T.KING,I.HUH,A.SHENAI,T.M.BROOKS,C.L.BROOKS JRNL TITL STRUCTURAL BASIS OF VHH-MEDIATED NEUTRALIZATION OF THE JRNL TITL 2 FOOD-BORNE PATHOGENLISTERIA MONOCYTOGENES. JRNL REF J. BIOL. CHEM. V. 293 13626 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29976754 JRNL DOI 10.1074/JBC.RA118.003888 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 52498 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2672 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.6081 - 3.4682 0.91 2531 136 0.1593 0.1734 REMARK 3 2 3.4682 - 2.7530 0.99 2687 110 0.1493 0.1781 REMARK 3 3 2.7530 - 2.4051 0.99 2652 160 0.1550 0.1743 REMARK 3 4 2.4051 - 2.1852 1.00 2669 148 0.1519 0.1753 REMARK 3 5 2.1852 - 2.0286 1.00 2660 133 0.1504 0.1546 REMARK 3 6 2.0286 - 1.9090 1.00 2653 139 0.1520 0.1746 REMARK 3 7 1.9090 - 1.8134 1.00 2617 155 0.1548 0.1729 REMARK 3 8 1.8134 - 1.7344 1.00 2633 144 0.1556 0.2268 REMARK 3 9 1.7344 - 1.6677 1.00 2665 155 0.1542 0.1789 REMARK 3 10 1.6677 - 1.6101 1.00 2630 136 0.1556 0.1721 REMARK 3 11 1.6101 - 1.5598 1.00 2601 131 0.1627 0.1641 REMARK 3 12 1.5598 - 1.5152 1.00 2696 130 0.1736 0.2034 REMARK 3 13 1.5152 - 1.4753 1.00 2586 154 0.1759 0.1937 REMARK 3 14 1.4753 - 1.4393 1.00 2625 138 0.1755 0.2161 REMARK 3 15 1.4393 - 1.4066 1.00 2620 169 0.1924 0.2021 REMARK 3 16 1.4066 - 1.3766 1.00 2630 134 0.2111 0.2314 REMARK 3 17 1.3766 - 1.3491 1.00 2637 136 0.2336 0.2501 REMARK 3 18 1.3491 - 1.3236 0.99 2597 137 0.2605 0.2761 REMARK 3 19 1.3236 - 1.3000 0.94 2437 127 0.2648 0.2876 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1994 REMARK 3 ANGLE : 1.591 2706 REMARK 3 CHIRALITY : 0.071 293 REMARK 3 PLANARITY : 0.010 350 REMARK 3 DIHEDRAL : 13.153 698 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3798 -3.7599 -1.4091 REMARK 3 T TENSOR REMARK 3 T11: 0.2666 T22: 0.2541 REMARK 3 T33: 0.2247 T12: -0.0180 REMARK 3 T13: 0.0797 T23: -0.0717 REMARK 3 L TENSOR REMARK 3 L11: 0.7342 L22: 0.0662 REMARK 3 L33: 2.5114 L12: -0.1325 REMARK 3 L13: 1.3057 L23: -0.3244 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: 0.3884 S13: -0.3897 REMARK 3 S21: -0.3114 S22: -0.0146 S23: -0.2658 REMARK 3 S31: 0.4060 S32: 0.6170 S33: -0.1003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8327 -2.8951 14.3912 REMARK 3 T TENSOR REMARK 3 T11: 0.1102 T22: 0.2004 REMARK 3 T33: 0.1589 T12: -0.0176 REMARK 3 T13: 0.0120 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.1556 L22: 1.3353 REMARK 3 L33: 3.9995 L12: 0.0969 REMARK 3 L13: 0.4567 L23: -0.6511 REMARK 3 S TENSOR REMARK 3 S11: -0.0769 S12: -0.1065 S13: -0.0149 REMARK 3 S21: 0.1215 S22: -0.1135 S23: -0.3315 REMARK 3 S31: -0.2123 S32: 0.2770 S33: 0.0939 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6364 1.7613 6.6646 REMARK 3 T TENSOR REMARK 3 T11: 0.1012 T22: 0.1095 REMARK 3 T33: 0.0980 T12: -0.0058 REMARK 3 T13: 0.0197 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 2.1783 L22: 1.2742 REMARK 3 L33: 2.6061 L12: -0.6073 REMARK 3 L13: 0.5993 L23: -0.4710 REMARK 3 S TENSOR REMARK 3 S11: 0.0134 S12: -0.0272 S13: -0.0066 REMARK 3 S21: -0.0496 S22: 0.0428 S23: 0.0263 REMARK 3 S31: -0.0205 S32: -0.0958 S33: -0.0587 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6570 5.7894 16.1110 REMARK 3 T TENSOR REMARK 3 T11: 0.1601 T22: 0.1635 REMARK 3 T33: 0.1585 T12: 0.0112 REMARK 3 T13: 0.0134 T23: -0.0545 REMARK 3 L TENSOR REMARK 3 L11: 3.0800 L22: 2.5483 REMARK 3 L33: 1.9304 L12: 0.3798 REMARK 3 L13: 0.3997 L23: -0.1243 REMARK 3 S TENSOR REMARK 3 S11: -0.0845 S12: -0.4223 S13: 0.1536 REMARK 3 S21: 0.0763 S22: 0.0326 S23: -0.0797 REMARK 3 S31: -0.3239 S32: 0.0179 S33: 0.0322 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8878 1.5023 13.9576 REMARK 3 T TENSOR REMARK 3 T11: 0.1303 T22: 0.1489 REMARK 3 T33: 0.1621 T12: -0.0111 REMARK 3 T13: 0.0114 T23: -0.0339 REMARK 3 L TENSOR REMARK 3 L11: 1.4949 L22: 1.5196 REMARK 3 L33: 2.4831 L12: 0.0903 REMARK 3 L13: 0.3081 L23: -0.4348 REMARK 3 S TENSOR REMARK 3 S11: 0.0230 S12: -0.0895 S13: 0.0852 REMARK 3 S21: 0.0917 S22: 0.0395 S23: -0.2223 REMARK 3 S31: -0.2312 S32: 0.1178 S33: -0.0710 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8002 -3.2269 6.6710 REMARK 3 T TENSOR REMARK 3 T11: 0.1155 T22: 0.1083 REMARK 3 T33: 0.1093 T12: -0.0026 REMARK 3 T13: 0.0122 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 1.4827 L22: 1.1305 REMARK 3 L33: 2.3310 L12: -0.1778 REMARK 3 L13: 0.9268 L23: -0.8326 REMARK 3 S TENSOR REMARK 3 S11: 0.0741 S12: 0.0140 S13: -0.0326 REMARK 3 S21: -0.0141 S22: -0.0290 S23: 0.0157 REMARK 3 S31: 0.0100 S32: 0.0487 S33: -0.0683 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5121 -4.9215 38.1815 REMARK 3 T TENSOR REMARK 3 T11: 0.3002 T22: 0.2866 REMARK 3 T33: 0.2033 T12: -0.0644 REMARK 3 T13: -0.0229 T23: 0.0509 REMARK 3 L TENSOR REMARK 3 L11: 6.7303 L22: 0.1566 REMARK 3 L33: 5.8097 L12: 0.7872 REMARK 3 L13: 6.1331 L23: 0.8370 REMARK 3 S TENSOR REMARK 3 S11: 0.1664 S12: -0.9560 S13: -0.4087 REMARK 3 S21: 0.4414 S22: -0.1079 S23: 0.0351 REMARK 3 S31: 0.4624 S32: -0.9790 S33: -0.1647 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.6327 -2.4486 23.3686 REMARK 3 T TENSOR REMARK 3 T11: 0.1265 T22: 0.2129 REMARK 3 T33: 0.1630 T12: 0.0034 REMARK 3 T13: 0.0022 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 1.2819 L22: 0.9455 REMARK 3 L33: 5.7412 L12: 0.0355 REMARK 3 L13: 1.0780 L23: 0.6179 REMARK 3 S TENSOR REMARK 3 S11: -0.0186 S12: -0.0625 S13: -0.1350 REMARK 3 S21: 0.0492 S22: -0.1509 S23: 0.0870 REMARK 3 S31: -0.2132 S32: -0.3686 S33: 0.1051 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 26 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2333 2.4045 36.0044 REMARK 3 T TENSOR REMARK 3 T11: 0.1320 T22: 0.1181 REMARK 3 T33: 0.1261 T12: 0.0127 REMARK 3 T13: -0.0296 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 3.0393 L22: 2.4591 REMARK 3 L33: 1.8627 L12: 0.3271 REMARK 3 L13: 1.1982 L23: -0.2372 REMARK 3 S TENSOR REMARK 3 S11: 0.0232 S12: -0.2544 S13: 0.0180 REMARK 3 S21: 0.1981 S22: -0.0024 S23: -0.1190 REMARK 3 S31: -0.1385 S32: -0.1870 S33: -0.0216 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 40 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7044 3.1755 27.2747 REMARK 3 T TENSOR REMARK 3 T11: 0.1116 T22: 0.1257 REMARK 3 T33: 0.1678 T12: -0.0091 REMARK 3 T13: -0.0162 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 2.5639 L22: 2.8704 REMARK 3 L33: 3.8413 L12: 0.8208 REMARK 3 L13: 0.9474 L23: 0.6699 REMARK 3 S TENSOR REMARK 3 S11: -0.1124 S12: 0.2796 S13: -0.0914 REMARK 3 S21: -0.1491 S22: 0.0219 S23: -0.1237 REMARK 3 S31: -0.1595 S32: 0.2885 S33: 0.0714 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 61 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7960 6.7285 21.5416 REMARK 3 T TENSOR REMARK 3 T11: 0.2020 T22: 0.1438 REMARK 3 T33: 0.1697 T12: -0.0159 REMARK 3 T13: -0.0231 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 3.5213 L22: 2.9516 REMARK 3 L33: 3.0111 L12: -0.8397 REMARK 3 L13: 0.6230 L23: 1.5589 REMARK 3 S TENSOR REMARK 3 S11: -0.2659 S12: 0.0616 S13: 0.3368 REMARK 3 S21: -0.0891 S22: 0.0872 S23: -0.1396 REMARK 3 S31: -0.4839 S32: 0.3692 S33: 0.2029 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 74 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0286 4.8593 31.0548 REMARK 3 T TENSOR REMARK 3 T11: 0.1869 T22: 0.2505 REMARK 3 T33: 0.1588 T12: 0.0516 REMARK 3 T13: 0.0131 T23: -0.0492 REMARK 3 L TENSOR REMARK 3 L11: 1.6972 L22: 1.1507 REMARK 3 L33: 5.4772 L12: 0.3681 REMARK 3 L13: -0.6062 L23: -0.1591 REMARK 3 S TENSOR REMARK 3 S11: -0.0335 S12: -0.1596 S13: 0.1267 REMARK 3 S21: 0.1107 S22: -0.0591 S23: 0.2173 REMARK 3 S31: -0.4017 S32: -0.7359 S33: 0.0857 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8316 -2.5613 13.6537 REMARK 3 T TENSOR REMARK 3 T11: 0.1470 T22: 0.2312 REMARK 3 T33: 0.1826 T12: 0.0162 REMARK 3 T13: 0.0383 T23: -0.0579 REMARK 3 L TENSOR REMARK 3 L11: 2.7086 L22: 3.3881 REMARK 3 L33: 1.6795 L12: -2.3650 REMARK 3 L13: 0.1484 L23: 0.7156 REMARK 3 S TENSOR REMARK 3 S11: 0.0334 S12: 0.5259 S13: 0.0543 REMARK 3 S21: -0.1826 S22: -0.0098 S23: -0.2907 REMARK 3 S31: -0.2504 S32: 0.1895 S33: -0.1166 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 92 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6041 -2.6432 30.6679 REMARK 3 T TENSOR REMARK 3 T11: 0.1333 T22: 0.0944 REMARK 3 T33: 0.1889 T12: 0.0036 REMARK 3 T13: -0.0357 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.2503 L22: 0.9706 REMARK 3 L33: 2.2413 L12: 0.0827 REMARK 3 L13: 0.7786 L23: 0.4424 REMARK 3 S TENSOR REMARK 3 S11: 0.1499 S12: -0.0136 S13: -0.2165 REMARK 3 S21: 0.1675 S22: -0.0397 S23: -0.2298 REMARK 3 S31: 0.1206 S32: -0.0623 S33: -0.0801 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 1392 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DBA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234307. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : ACCEL/BRUKER DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR (DCM), FEATURING REMARK 200 INDIRECTLY CRYO-COOLED FIRST REMARK 200 CRYSTAL AND SAGITTALLY FOCUSING REMARK 200 SECOND CRYSTAL REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR: ULTRA REMARK 200 -LOW EXPANSION (ULE) TITANIUM REMARK 200 SILIICATE FLAT MIRROR WITH PT, REMARK 200 UNCOATED, AND PD STRIPS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52542 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.34900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3STB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 28.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, 25% PEG 8000, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 15.59650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 124 REMARK 465 SER A 125 REMARK 465 GLU A 126 REMARK 465 GLN A 127 REMARK 465 LYS A 128 REMARK 465 LEU A 129 REMARK 465 ILE A 130 REMARK 465 SER A 131 REMARK 465 GLU A 132 REMARK 465 GLU A 133 REMARK 465 ASP A 134 REMARK 465 LEU A 135 REMARK 465 ASN A 136 REMARK 465 HIS A 137 REMARK 465 HIS A 138 REMARK 465 HIS A 139 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 GLY B 124 REMARK 465 SER B 125 REMARK 465 GLU B 126 REMARK 465 GLN B 127 REMARK 465 LYS B 128 REMARK 465 LEU B 129 REMARK 465 ILE B 130 REMARK 465 SER B 131 REMARK 465 GLU B 132 REMARK 465 GLU B 133 REMARK 465 ASP B 134 REMARK 465 LEU B 135 REMARK 465 ASN B 136 REMARK 465 HIS B 137 REMARK 465 HIS B 138 REMARK 465 HIS B 139 REMARK 465 HIS B 140 REMARK 465 HIS B 141 REMARK 465 HIS B 142 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H2 GLN B 1 O HOH B 201 1.21 REMARK 500 O HOH B 204 O HOH B 271 1.80 REMARK 500 O HOH A 326 O HOH A 335 1.85 REMARK 500 O HOH A 332 O HOH A 349 1.87 REMARK 500 O HOH A 356 O HOH A 379 1.88 REMARK 500 O HOH B 284 O HOH B 340 1.92 REMARK 500 O HOH A 317 O HOH A 345 1.92 REMARK 500 O HOH B 317 O HOH B 333 1.94 REMARK 500 O HOH A 348 O HOH A 353 1.98 REMARK 500 O HOH A 351 O HOH A 381 1.98 REMARK 500 N GLN B 1 O HOH B 201 1.98 REMARK 500 O HOH A 231 O HOH A 233 1.99 REMARK 500 O HOH A 224 O HOH A 234 2.03 REMARK 500 O HOH B 339 O HOH B 365 2.06 REMARK 500 O HOH A 241 O HOH A 351 2.09 REMARK 500 O HOH A 210 O HOH A 306 2.10 REMARK 500 O HOH A 329 O HOH B 355 2.11 REMARK 500 OD1 ASN B 52 O HOH B 202 2.12 REMARK 500 O HOH B 285 O HOH B 352 2.15 REMARK 500 OE1 GLU A 44 O HOH A 201 2.18 REMARK 500 OG SER B 7 OG SER B 21 2.19 REMARK 500 OE1 GLU A 5 O HOH A 202 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 202 O HOH A 256 2645 1.96 REMARK 500 O HOH A 342 O HOH B 364 2546 1.99 REMARK 500 O HOH A 330 O HOH A 376 2555 1.99 REMARK 500 O HOH A 358 O HOH A 359 1545 2.06 REMARK 500 O HOH A 311 O HOH B 351 1655 2.10 REMARK 500 O HOH A 331 O HOH B 336 1655 2.14 REMARK 500 O HOH A 244 O HOH A 245 2555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 45 CG - CD - NE ANGL. DEV. = -14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 56 10.91 -144.86 REMARK 500 ALA A 92 167.66 179.63 REMARK 500 ASP B 66 -25.92 81.80 REMARK 500 REMARK 500 REMARK: NULL DBREF 6DBA A 1 142 PDB 6DBA 6DBA 1 142 DBREF 6DBA B 1 142 PDB 6DBA 6DBA 1 142 SEQRES 1 A 142 GLN VAL LYS LEU GLU GLU SER GLY GLY GLY SER VAL GLN SEQRES 2 A 142 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 142 HIS THR TYR SER THR TYR CYS MET GLY TRP PHE ARG GLN SEQRES 4 A 142 VAL PRO GLY LYS GLU ARG GLU GLY VAL ALA ARG ILE ASN SEQRES 5 A 142 VAL GLY GLY SER SER THR TRP TYR ALA ASP SER VAL ARG SEQRES 6 A 142 ASP ARG PHE THR ILE SER GLN ASP ASN ALA LYS ASN THR SEQRES 7 A 142 VAL TYR LEU GLN MET ASN SER LEU LYS LEU GLU ASP THR SEQRES 8 A 142 ALA ILE TYR TYR CYS THR LEU HIS ARG PHE CYS ASN THR SEQRES 9 A 142 TRP SER LEU GLY THR LEU ASN VAL TRP GLY GLN GLY THR SEQRES 10 A 142 GLN VAL THR VAL SER SER GLY SER GLU GLN LYS LEU ILE SEQRES 11 A 142 SER GLU GLU ASP LEU ASN HIS HIS HIS HIS HIS HIS SEQRES 1 B 142 GLN VAL LYS LEU GLU GLU SER GLY GLY GLY SER VAL GLN SEQRES 2 B 142 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 142 HIS THR TYR SER THR TYR CYS MET GLY TRP PHE ARG GLN SEQRES 4 B 142 VAL PRO GLY LYS GLU ARG GLU GLY VAL ALA ARG ILE ASN SEQRES 5 B 142 VAL GLY GLY SER SER THR TRP TYR ALA ASP SER VAL ARG SEQRES 6 B 142 ASP ARG PHE THR ILE SER GLN ASP ASN ALA LYS ASN THR SEQRES 7 B 142 VAL TYR LEU GLN MET ASN SER LEU LYS LEU GLU ASP THR SEQRES 8 B 142 ALA ILE TYR TYR CYS THR LEU HIS ARG PHE CYS ASN THR SEQRES 9 B 142 TRP SER LEU GLY THR LEU ASN VAL TRP GLY GLN GLY THR SEQRES 10 B 142 GLN VAL THR VAL SER SER GLY SER GLU GLN LYS LEU ILE SEQRES 11 B 142 SER GLU GLU ASP LEU ASN HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *358(H2 O) HELIX 1 AA1 LYS A 87 THR A 91 5 5 HELIX 2 AA2 PHE A 101 SER A 106 1 6 HELIX 3 AA3 ASP B 62 ARG B 65 5 4 HELIX 4 AA4 LYS B 87 THR B 91 5 5 HELIX 5 AA5 PHE B 101 SER B 106 1 6 SHEET 1 AA1 4 LYS A 3 SER A 7 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O SER A 25 N LYS A 3 SHEET 3 AA1 4 THR A 78 MET A 83 -1 O MET A 83 N LEU A 18 SHEET 4 AA1 4 PHE A 68 ASP A 73 -1 N ASP A 73 O THR A 78 SHEET 1 AA2 6 GLY A 10 GLN A 13 0 SHEET 2 AA2 6 THR A 117 SER A 122 1 O THR A 120 N VAL A 12 SHEET 3 AA2 6 ALA A 92 HIS A 99 -1 N TYR A 94 O THR A 117 SHEET 4 AA2 6 TYR A 32 GLN A 39 -1 N CYS A 33 O HIS A 99 SHEET 5 AA2 6 GLU A 46 VAL A 53 -1 O GLU A 46 N ARG A 38 SHEET 6 AA2 6 THR A 58 TYR A 60 -1 O TRP A 59 N ARG A 50 SHEET 1 AA3 4 GLY A 10 GLN A 13 0 SHEET 2 AA3 4 THR A 117 SER A 122 1 O THR A 120 N VAL A 12 SHEET 3 AA3 4 ALA A 92 HIS A 99 -1 N TYR A 94 O THR A 117 SHEET 4 AA3 4 VAL A 112 TRP A 113 -1 O VAL A 112 N LEU A 98 SHEET 1 AA4 4 LYS B 3 SER B 7 0 SHEET 2 AA4 4 LEU B 18 SER B 25 -1 O ALA B 23 N GLU B 5 SHEET 3 AA4 4 THR B 78 MET B 83 -1 O MET B 83 N LEU B 18 SHEET 4 AA4 4 PHE B 68 ASP B 73 -1 N THR B 69 O GLN B 82 SHEET 1 AA5 6 GLY B 10 GLN B 13 0 SHEET 2 AA5 6 THR B 117 SER B 122 1 O SER B 122 N VAL B 12 SHEET 3 AA5 6 ALA B 92 HIS B 99 -1 N TYR B 94 O THR B 117 SHEET 4 AA5 6 TYR B 32 GLN B 39 -1 N CYS B 33 O HIS B 99 SHEET 5 AA5 6 GLU B 46 VAL B 53 -1 O GLU B 46 N ARG B 38 SHEET 6 AA5 6 THR B 58 TYR B 60 -1 O TRP B 59 N ARG B 50 SHEET 1 AA6 4 GLY B 10 GLN B 13 0 SHEET 2 AA6 4 THR B 117 SER B 122 1 O SER B 122 N VAL B 12 SHEET 3 AA6 4 ALA B 92 HIS B 99 -1 N TYR B 94 O THR B 117 SHEET 4 AA6 4 VAL B 112 TRP B 113 -1 O VAL B 112 N LEU B 98 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.05 SSBOND 2 CYS A 33 CYS A 102 1555 1555 2.16 SSBOND 3 CYS B 22 CYS B 96 1555 1555 2.06 SSBOND 4 CYS B 33 CYS B 102 1555 1555 2.14 CRYST1 46.442 31.193 74.751 90.00 93.81 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021532 0.000000 0.001434 0.00000 SCALE2 0.000000 0.032059 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013407 0.00000