HEADER HYDROLASE 08-MAY-18 6DD1 TITLE CRYSTAL STRUCTURE OF VIM-2 COMPLEXED WITH COMPOUND 14 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE CLASS B VIM-2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BLAVIM-2,METALLO BETA-LACTAMASE,METALLO-BETA LACTAMASE COMPND 5 PROTEIN,METALLO-BETA-LACTAMASE VIM-2,VIM-2,VIM-2 BETA-LACTAMASE,VIM-2 COMPND 6 CLASS B METALLO B-LACTAMASE,VIM-2 METALLO BETA-LACTAMASE,VIM-2 TYPE COMPND 7 METALLO-BETA-LACTAMASE; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: BLAVIM-2, BLA VIM-2, BLA-VIM-2, BLASVIM-2, BLAVIM2, VIM-2, SOURCE 5 VIM-2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS BETA-LACTAMASE, CARBAPENEMASE, PHOSPHONATE, INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR O.A.PEMBERTON,Y.CHEN REVDAT 5 11-OCT-23 6DD1 1 LINK REVDAT 4 18-DEC-19 6DD1 1 REMARK REVDAT 3 09-OCT-19 6DD1 1 JRNL REVDAT 2 02-OCT-19 6DD1 1 JRNL REVDAT 1 08-MAY-19 6DD1 0 JRNL AUTH O.A.PEMBERTON,P.JAISHANKAR,A.AKHTAR,J.L.ADAMS,L.N.SHAW, JRNL AUTH 2 A.R.RENSLO,Y.CHEN JRNL TITL HETEROARYL PHOSPHONATES AS NONCOVALENT INHIBITORS OF BOTH JRNL TITL 2 SERINE- AND METALLOCARBAPENEMASES. JRNL REF J.MED.CHEM. V. 62 8480 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 31483651 JRNL DOI 10.1021/ACS.JMEDCHEM.9B00728 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.080 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 45246 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.660 REMARK 3 FREE R VALUE TEST SET COUNT : 4138 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.3915 - 5.2742 1.00 2860 114 0.1525 0.1779 REMARK 3 2 5.2742 - 4.1895 1.00 2834 149 0.1046 0.1801 REMARK 3 3 4.1895 - 3.6608 1.00 2846 120 0.1059 0.1564 REMARK 3 4 3.6608 - 3.3265 1.00 2825 152 0.1046 0.1353 REMARK 3 5 3.3265 - 3.0883 1.00 2813 94 0.1161 0.1563 REMARK 3 6 3.0883 - 2.9064 1.00 2862 164 0.1269 0.2421 REMARK 3 7 2.9064 - 2.7609 1.00 2870 120 0.1300 0.2050 REMARK 3 8 2.7609 - 2.6408 1.00 2780 140 0.1276 0.2111 REMARK 3 9 2.6408 - 2.5392 1.00 2886 83 0.1283 0.1966 REMARK 3 10 2.5392 - 2.4516 1.00 2837 146 0.1395 0.1956 REMARK 3 11 2.4516 - 2.3750 1.00 2809 177 0.1347 0.2297 REMARK 3 12 2.3750 - 2.3071 1.00 2751 159 0.1428 0.2036 REMARK 3 13 2.3071 - 2.2464 1.00 2829 177 0.1481 0.2032 REMARK 3 14 2.2464 - 2.1916 1.00 2768 179 0.1498 0.2339 REMARK 3 15 2.1916 - 2.1418 1.00 2810 171 0.1562 0.2130 REMARK 3 16 2.1418 - 2.0962 1.00 2788 115 0.1531 0.2063 REMARK 3 17 2.0962 - 2.0543 1.00 2886 104 0.1578 0.2234 REMARK 3 18 2.0543 - 2.0155 1.00 2851 154 0.1698 0.2666 REMARK 3 19 2.0155 - 1.9795 1.00 2836 100 0.1725 0.2281 REMARK 3 20 1.9795 - 1.9460 1.00 2869 109 0.1907 0.2200 REMARK 3 21 1.9460 - 1.9146 1.00 2750 150 0.2062 0.2795 REMARK 3 22 1.9146 - 1.8851 0.99 2861 136 0.2045 0.2909 REMARK 3 23 1.8851 - 1.8574 0.99 2790 139 0.2163 0.2713 REMARK 3 24 1.8574 - 1.8313 0.99 2809 139 0.2166 0.2886 REMARK 3 25 1.8313 - 1.8065 0.99 2875 100 0.2344 0.3144 REMARK 3 26 1.8065 - 1.7831 0.99 2807 153 0.2462 0.2930 REMARK 3 27 1.7831 - 1.7608 0.99 2708 193 0.2528 0.3375 REMARK 3 28 1.7608 - 1.7396 0.99 2815 135 0.2463 0.3095 REMARK 3 29 1.7396 - 1.7193 0.99 2815 132 0.2486 0.2850 REMARK 3 30 1.7193 - 1.7000 0.99 2798 134 0.2599 0.3245 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DD1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234407. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 7.2.1 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45248 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 33.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.18600 REMARK 200 R SYM (I) : 0.18600 REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.94700 REMARK 200 R SYM FOR SHELL (I) : 0.05400 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.1 REMARK 200 STARTING MODEL: 1KO3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE, 20% (W/V) PEG REMARK 280 3350, 1 MM TCEP, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.24000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.60000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.24000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.60000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 23 REMARK 465 PRO A 24 REMARK 465 VAL A 25 REMARK 465 ASP A 26 REMARK 465 SER A 27 REMARK 465 SER A 28 REMARK 465 GLY A 29 REMARK 465 SER A 297 REMARK 465 VAL A 298 REMARK 465 VAL A 299 REMARK 465 GLU A 300 REMARK 465 GLY B 23 REMARK 465 PRO B 24 REMARK 465 VAL B 25 REMARK 465 ASP B 26 REMARK 465 SER B 27 REMARK 465 SER B 28 REMARK 465 GLY B 29 REMARK 465 SER B 297 REMARK 465 VAL B 298 REMARK 465 VAL B 299 REMARK 465 GLU B 300 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 741 O HOH A 762 1.96 REMARK 500 O HOH B 603 O HOH B 675 2.06 REMARK 500 O HOH A 759 O HOH A 772 2.07 REMARK 500 O HOH A 598 O HOH A 671 2.09 REMARK 500 O HOH A 659 O HOH A 761 2.12 REMARK 500 O HOH B 503 O HOH B 538 2.12 REMARK 500 O HOH A 548 O HOH A 687 2.12 REMARK 500 O HOH B 721 O HOH B 741 2.13 REMARK 500 O HOH B 745 O HOH B 787 2.13 REMARK 500 O HOH A 523 O HOH A 546 2.14 REMARK 500 O HOH B 560 O HOH B 753 2.14 REMARK 500 O HOH B 763 O HOH B 766 2.14 REMARK 500 O HOH B 697 O HOH B 729 2.15 REMARK 500 O HOH A 617 O HOH A 754 2.16 REMARK 500 O HOH A 723 O HOH A 779 2.18 REMARK 500 O HOH A 643 O HOH A 750 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 685 O HOH B 621 3545 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 146.59 72.64 REMARK 500 TRP A 87 73.85 70.47 REMARK 500 ALA A 195 -105.30 -149.38 REMARK 500 ASP B 84 144.05 75.48 REMARK 500 TRP B 87 67.02 72.46 REMARK 500 ALA B 195 -105.74 -151.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 788 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 789 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A 790 DISTANCE = 8.15 ANGSTROMS REMARK 525 HOH B 792 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH B 793 DISTANCE = 6.92 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HIS A 118 ND1 98.3 REMARK 620 3 HIS A 196 NE2 103.8 113.6 REMARK 620 4 M3Q A 403 O04 112.4 110.0 117.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD2 REMARK 620 2 CYS A 221 SG 82.9 REMARK 620 3 HIS A 263 NE2 85.9 110.2 REMARK 620 4 M3Q A 403 O03 81.8 135.1 110.4 REMARK 620 5 M3Q A 404 O01 164.8 111.9 91.7 85.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 407 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 170 NE2 REMARK 620 2 HIS A 285 ND1 44.3 REMARK 620 3 ACT A 405 OXT 106.5 88.5 REMARK 620 4 ACT A 406 O 133.3 95.4 91.9 REMARK 620 5 ACT A 406 OXT 90.5 87.8 151.2 60.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 116 NE2 REMARK 620 2 HIS B 118 ND1 99.6 REMARK 620 3 HIS B 196 NE2 102.4 111.2 REMARK 620 4 M3Q B 403 O01 110.7 104.9 125.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 120 OD2 REMARK 620 2 CYS B 221 SG 82.5 REMARK 620 3 HIS B 263 NE2 88.2 106.5 REMARK 620 4 M3Q B 403 O03 78.6 135.8 112.3 REMARK 620 5 M3Q B 404 O03 164.9 110.1 95.8 86.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 407 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 170 NE2 REMARK 620 2 HIS B 285 ND1 42.1 REMARK 620 3 ACT B 405 O 39.7 2.4 REMARK 620 4 ACT B 405 OXT 41.9 2.1 3.1 REMARK 620 5 ACT B 406 OXT 40.7 4.0 3.7 5.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue M3Q A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue M3Q A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue M3Q B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue M3Q B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 407 DBREF 6DD1 A 25 300 UNP Q9K2N0 Q9K2N0_PSEAI 27 266 DBREF 6DD1 B 25 300 UNP Q9K2N0 Q9K2N0_PSEAI 27 266 SEQADV 6DD1 GLY A 23 UNP Q9K2N0 EXPRESSION TAG SEQADV 6DD1 PRO A 24 UNP Q9K2N0 EXPRESSION TAG SEQADV 6DD1 GLY B 23 UNP Q9K2N0 EXPRESSION TAG SEQADV 6DD1 PRO B 24 UNP Q9K2N0 EXPRESSION TAG SEQRES 1 A 242 GLY PRO VAL ASP SER SER GLY GLU TYR PRO THR VAL SER SEQRES 2 A 242 GLU ILE PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA SEQRES 3 A 242 ASP GLY VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP SEQRES 4 A 242 GLY ALA VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP SEQRES 5 A 242 GLY ASP GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA SEQRES 6 A 242 LYS ASN THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN SEQRES 7 A 242 ILE GLY LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE SEQRES 8 A 242 HIS ASP ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA SEQRES 9 A 242 ALA GLY VAL ALA THR TYR ALA SER PRO SER THR ARG ARG SEQRES 10 A 242 LEU ALA GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER SEQRES 11 A 242 LEU GLU GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE SEQRES 12 A 242 GLY PRO VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER SEQRES 13 A 242 THR ASP ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL SEQRES 14 A 242 LEU TYR GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SEQRES 15 A 242 SER ALA GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP SEQRES 16 A 242 PRO THR SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU SEQRES 17 A 242 ALA GLN PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY SEQRES 18 A 242 LEU ASP LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA SEQRES 19 A 242 HIS THR ASN ARG SER VAL VAL GLU SEQRES 1 B 242 GLY PRO VAL ASP SER SER GLY GLU TYR PRO THR VAL SER SEQRES 2 B 242 GLU ILE PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA SEQRES 3 B 242 ASP GLY VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP SEQRES 4 B 242 GLY ALA VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP SEQRES 5 B 242 GLY ASP GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA SEQRES 6 B 242 LYS ASN THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN SEQRES 7 B 242 ILE GLY LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE SEQRES 8 B 242 HIS ASP ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA SEQRES 9 B 242 ALA GLY VAL ALA THR TYR ALA SER PRO SER THR ARG ARG SEQRES 10 B 242 LEU ALA GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER SEQRES 11 B 242 LEU GLU GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE SEQRES 12 B 242 GLY PRO VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER SEQRES 13 B 242 THR ASP ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL SEQRES 14 B 242 LEU TYR GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SEQRES 15 B 242 SER ALA GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP SEQRES 16 B 242 PRO THR SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU SEQRES 17 B 242 ALA GLN PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY SEQRES 18 B 242 LEU ASP LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA SEQRES 19 B 242 HIS THR ASN ARG SER VAL VAL GLU HET ZN A 401 1 HET ZN A 402 1 HET M3Q A 403 15 HET M3Q A 404 15 HET ACT A 405 4 HET ACT A 406 4 HET ZN A 407 1 HET ZN B 401 1 HET ZN B 402 1 HET M3Q B 403 15 HET M3Q B 404 15 HET ACT B 405 4 HET ACT B 406 4 HET ZN B 407 1 HETNAM ZN ZINC ION HETNAM M3Q [(QUINOLIN-8-YL)METHYL]PHOSPHONIC ACID HETNAM ACT ACETATE ION FORMUL 3 ZN 6(ZN 2+) FORMUL 5 M3Q 4(C10 H10 N O3 P) FORMUL 7 ACT 4(C2 H3 O2 1-) FORMUL 17 HOH *583(H2 O) HELIX 1 AA1 THR A 33 ILE A 37 5 5 HELIX 2 AA2 GLY A 88 ILE A 104 1 16 HELIX 3 AA3 HIS A 118 GLY A 123 1 6 HELIX 4 AA4 GLY A 124 ALA A 131 1 8 HELIX 5 AA5 SER A 139 GLY A 150 1 12 HELIX 6 AA6 CYS A 221 ILE A 223 5 3 HELIX 7 AA7 GLU A 241 TYR A 253 1 13 HELIX 8 AA8 LEU A 280 ASN A 295 1 16 HELIX 9 AA9 THR B 33 ILE B 37 5 5 HELIX 10 AB1 GLY B 88 ILE B 104 1 16 HELIX 11 AB2 HIS B 118 GLY B 123 1 6 HELIX 12 AB3 GLY B 124 ALA B 131 1 8 HELIX 13 AB4 SER B 139 GLY B 150 1 12 HELIX 14 AB5 CYS B 221 ILE B 223 5 3 HELIX 15 AB6 GLU B 241 TYR B 253 1 13 HELIX 16 AB7 LEU B 280 ASN B 295 1 16 SHEET 1 AA1 7 VAL A 42 ALA A 49 0 SHEET 2 AA1 7 VAL A 52 PHE A 61 -1 O ILE A 56 N ARG A 43 SHEET 3 AA1 7 ALA A 64 ASP A 76 -1 O ILE A 73 N TRP A 53 SHEET 4 AA1 7 GLU A 79 ILE A 83 -1 O GLU A 79 N ASP A 76 SHEET 5 AA1 7 VAL A 109 VAL A 113 1 O ARG A 111 N LEU A 82 SHEET 6 AA1 7 ALA A 135 ALA A 138 1 O ALA A 135 N ALA A 112 SHEET 7 AA1 7 HIS A 170 SER A 171 1 O HIS A 170 N THR A 136 SHEET 1 AA2 5 ASP A 180 PHE A 184 0 SHEET 2 AA2 5 VAL A 187 TYR A 191 -1 O LEU A 189 N VAL A 182 SHEET 3 AA2 5 VAL A 202 VAL A 205 -1 O TYR A 204 N GLU A 188 SHEET 4 AA2 5 VAL A 216 GLY A 220 -1 O TYR A 218 N VAL A 203 SHEET 5 AA2 5 PHE A 258 PRO A 261 1 O PHE A 258 N LEU A 217 SHEET 1 AA3 7 ARG B 43 ALA B 49 0 SHEET 2 AA3 7 VAL B 52 PHE B 61 -1 O ILE B 56 N ARG B 43 SHEET 3 AA3 7 ALA B 64 ASP B 76 -1 O ILE B 73 N TRP B 53 SHEET 4 AA3 7 GLU B 79 ILE B 83 -1 O GLU B 79 N ASP B 76 SHEET 5 AA3 7 VAL B 109 VAL B 113 1 O ARG B 111 N LEU B 82 SHEET 6 AA3 7 ALA B 135 ALA B 138 1 O TYR B 137 N ALA B 112 SHEET 7 AA3 7 HIS B 170 SER B 171 1 O HIS B 170 N THR B 136 SHEET 1 AA4 5 ASP B 180 PHE B 184 0 SHEET 2 AA4 5 VAL B 187 TYR B 191 -1 O LEU B 189 N VAL B 182 SHEET 3 AA4 5 VAL B 202 VAL B 205 -1 O VAL B 202 N PHE B 190 SHEET 4 AA4 5 VAL B 216 GLY B 220 -1 O TYR B 218 N VAL B 203 SHEET 5 AA4 5 PHE B 258 PRO B 261 1 O PHE B 258 N LEU B 217 LINK NE2 HIS A 116 ZN ZN A 401 1555 1555 2.10 LINK ND1 HIS A 118 ZN ZN A 401 1555 1555 1.97 LINK OD2 ASP A 120 ZN ZN A 402 1555 1555 2.46 LINK NE2 HIS A 170 ZN ZN A 407 1555 1555 2.02 LINK NE2 HIS A 196 ZN ZN A 401 1555 1555 2.07 LINK SG CYS A 221 ZN ZN A 402 1555 1555 2.33 LINK NE2 HIS A 263 ZN ZN A 402 1555 1555 2.04 LINK ND1 HIS A 285 ZN ZN A 407 1555 4556 2.12 LINK ZN ZN A 401 O04 M3Q A 403 1555 1555 2.17 LINK ZN ZN A 402 O03 M3Q A 403 1555 1555 2.14 LINK ZN ZN A 402 O01 M3Q A 404 1555 1555 2.47 LINK OXT ACT A 405 ZN ZN A 407 1555 1555 1.85 LINK O ACT A 406 ZN ZN A 407 1555 1555 1.94 LINK OXT ACT A 406 ZN ZN A 407 1555 1555 2.52 LINK NE2 HIS B 116 ZN ZN B 401 1555 1555 2.08 LINK ND1 HIS B 118 ZN ZN B 401 1555 1555 1.99 LINK OD2 ASP B 120 ZN ZN B 402 1555 1555 2.44 LINK NE2 HIS B 170 ZN ZN B 407 1555 4455 2.09 LINK NE2 HIS B 196 ZN ZN B 401 1555 1555 2.02 LINK SG CYS B 221 ZN ZN B 402 1555 1555 2.25 LINK NE2 HIS B 263 ZN ZN B 402 1555 1555 1.99 LINK ND1 HIS B 285 ZN ZN B 407 1555 1555 2.04 LINK ZN ZN B 401 O01 M3Q B 403 1555 1555 2.02 LINK ZN ZN B 402 O03 M3Q B 403 1555 1555 2.14 LINK ZN ZN B 402 O03 M3Q B 404 1555 1555 2.60 LINK O ACT B 405 ZN ZN B 407 1555 1555 2.08 LINK OXT ACT B 405 ZN ZN B 407 1555 1555 2.67 LINK OXT ACT B 406 ZN ZN B 407 1555 1555 1.92 SITE 1 AC1 4 HIS A 116 HIS A 118 HIS A 196 M3Q A 403 SITE 1 AC2 5 ASP A 120 CYS A 221 HIS A 263 M3Q A 403 SITE 2 AC2 5 M3Q A 404 SITE 1 AC3 12 PHE A 61 TRP A 87 HIS A 116 HIS A 118 SITE 2 AC3 12 ASP A 120 HIS A 196 ASN A 233 HIS A 263 SITE 3 AC3 12 ZN A 401 ZN A 402 M3Q A 404 HOH A 646 SITE 1 AC4 11 TYR A 67 HIS A 196 ARG A 228 GLY A 232 SITE 2 AC4 11 ASN A 233 HIS A 263 ZN A 402 M3Q A 403 SITE 3 AC4 11 HOH A 557 HOH A 561 ASP B 62 SITE 1 AC5 10 ALA A 135 THR A 136 THR A 169 HIS A 170 SITE 2 AC5 10 ASP A 281 HIS A 285 ASN A 288 ACT A 406 SITE 3 AC5 10 ZN A 407 HOH A 520 SITE 1 AC6 6 ALA A 135 HIS A 170 HIS A 285 ASN A 288 SITE 2 AC6 6 ACT A 405 ZN A 407 SITE 1 AC7 4 HIS A 170 HIS A 285 ACT A 405 ACT A 406 SITE 1 AC8 4 HIS B 116 HIS B 118 HIS B 196 M3Q B 403 SITE 1 AC9 5 ASP B 120 CYS B 221 HIS B 263 M3Q B 403 SITE 2 AC9 5 M3Q B 404 SITE 1 AD1 12 PHE B 61 TRP B 87 HIS B 116 HIS B 118 SITE 2 AD1 12 ASP B 120 HIS B 196 ASN B 233 HIS B 263 SITE 3 AD1 12 ZN B 401 ZN B 402 M3Q B 404 HOH B 624 SITE 1 AD2 11 ASP A 62 TYR B 67 HIS B 196 ARG B 228 SITE 2 AD2 11 GLY B 232 ASN B 233 HIS B 263 ZN B 402 SITE 3 AD2 11 M3Q B 403 HOH B 529 HOH B 546 SITE 1 AD3 7 ALA B 135 HIS B 170 HIS B 285 ASN B 288 SITE 2 AD3 7 ACT B 406 ZN B 407 HOH B 515 SITE 1 AD4 8 ALA B 135 THR B 169 HIS B 170 HIS B 285 SITE 2 AD4 8 ASN B 288 ACT B 405 ZN B 407 HOH B 512 SITE 1 AD5 4 HIS B 170 HIS B 285 ACT B 405 ACT B 406 CRYST1 102.480 79.200 77.880 90.00 138.63 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009758 0.000000 0.011080 0.00000 SCALE2 0.000000 0.012626 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019428 0.00000