HEADER IMMUNE SYSTEM 10-MAY-18 6DDM TITLE CRYSTAL STRUCTURE ANALYSIS OF THE EPITOPE OF AN ANTI-MICA ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-MICA FAB FRAGMENT LIGHT CHAIN CLONE 1D5; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MHC CLASS I POLYPEPTIDE-RELATED SEQUENCE A; COMPND 7 CHAIN: C; COMPND 8 SYNONYM: MHC CLASS I POLYPEPTIDE-RELATED SEQUENCE A,ISOFORM CRA_C, COMPND 9 MICA,STRESS INDUCIBLE CLASS I HOMOLOG,CDNA FLJ60820,HIGHLY SIMILAR TO COMPND 10 HOMO SAPIENS MHC CLASS I POLYPEPTIDE-RELATED SEQUENCE A (MICA),MRNA; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: ANTI-MICA FAB FRAGMENT HEAVY CHAIN CLONE 1D5; COMPND 14 CHAIN: B; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 STRAIN: BALB/C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: 64B4; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBR322; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: MICA, HCG_2001511; SOURCE 15 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PACGP67; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 21 ORGANISM_TAXID: 10090; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 24 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 25 EXPRESSION_SYSTEM_PLASMID: PBR322 KEYWDS FAB FRAGMENT-ANTIGEN COMPLEX, IMMUNOGLOBULIN DOMAIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.L.MATSUMOTO REVDAT 4 11-OCT-23 6DDM 1 REMARK REVDAT 3 23-JAN-19 6DDM 1 JRNL REVDAT 2 05-DEC-18 6DDM 1 JRNL REVDAT 1 24-OCT-18 6DDM 0 JRNL AUTH T.N.LOMBANA,M.L.MATSUMOTO,A.M.BERKLEY,E.TOY,R.COOK,Y.GAN, JRNL AUTH 2 C.DU,P.SCHNIER,W.SANDOVAL,Z.YE,J.M.SCHARTNER,J.KIM,C.SPIESS JRNL TITL HIGH-RESOLUTION GLYCOSYLATION SITE-ENGINEERING METHOD JRNL TITL 2 IDENTIFIES MICA EPITOPE CRITICAL FOR SHEDDING INHIBITION JRNL TITL 3 ACTIVITY OF ANTI-MICA ANTIBODIES. JRNL REF MABS V. 11 75 2019 JRNL REFN ESSN 1942-0870 JRNL PMID 30307368 JRNL DOI 10.1080/19420862.2018.1532767 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 120157 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 6152 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8651 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 385 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3880 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 618 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : -1.75000 REMARK 3 B33 (A**2) : 1.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.79000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.054 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.054 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.755 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4331 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3840 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5977 ; 1.302 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8929 ; 0.863 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 596 ; 6.296 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;34.965 ;24.371 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 651 ;11.366 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;12.958 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 679 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5113 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 966 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 214 REMARK 3 ORIGIN FOR THE GROUP (A): 74.8516 -2.0633 19.2172 REMARK 3 T TENSOR REMARK 3 T11: 0.0388 T22: 0.0556 REMARK 3 T33: 0.0127 T12: -0.0041 REMARK 3 T13: -0.0108 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 0.4624 L22: 0.5312 REMARK 3 L33: 0.4295 L12: 0.3802 REMARK 3 L13: 0.3457 L23: 0.3051 REMARK 3 S TENSOR REMARK 3 S11: 0.0383 S12: -0.0258 S13: 0.0219 REMARK 3 S21: -0.0461 S22: -0.0361 S23: 0.0411 REMARK 3 S31: 0.0558 S32: -0.0747 S33: -0.0022 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 204 C 297 REMARK 3 ORIGIN FOR THE GROUP (A): 114.2970 18.0556 36.3747 REMARK 3 T TENSOR REMARK 3 T11: 0.0350 T22: 0.0764 REMARK 3 T33: 0.0119 T12: 0.0176 REMARK 3 T13: -0.0009 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 2.9720 L22: 1.3050 REMARK 3 L33: 1.1877 L12: 1.1927 REMARK 3 L13: -1.0505 L23: -0.4553 REMARK 3 S TENSOR REMARK 3 S11: 0.0202 S12: -0.1718 S13: -0.1006 REMARK 3 S21: 0.0283 S22: 0.0125 S23: -0.0063 REMARK 3 S31: -0.0277 S32: 0.1019 S33: -0.0327 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 216 REMARK 3 ORIGIN FOR THE GROUP (A): 91.8976 -9.1348 17.1848 REMARK 3 T TENSOR REMARK 3 T11: 0.0312 T22: 0.0351 REMARK 3 T33: 0.0383 T12: 0.0106 REMARK 3 T13: 0.0225 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 0.6721 L22: 0.5471 REMARK 3 L33: 0.4550 L12: 0.3638 REMARK 3 L13: 0.3246 L23: 0.3132 REMARK 3 S TENSOR REMARK 3 S11: 0.0212 S12: 0.0947 S13: -0.0189 REMARK 3 S21: -0.0854 S22: 0.0218 S23: -0.0950 REMARK 3 S31: -0.0124 S32: 0.0205 S33: -0.0431 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6DDM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234424. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 126363 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1F3D, 4M1G, 1HYR, 1NZ8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, PH 4.6, 25% PEG REMARK 280 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.08850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU C 215 REMARK 465 ALA C 216 REMARK 465 SER C 217 REMARK 465 GLU C 218 REMARK 465 GLY C 219 REMARK 465 ASN C 220 REMARK 465 GLU B 1 REMARK 465 LYS B 129 REMARK 465 SER B 130 REMARK 465 THR B 131 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 GLN A 147 CG CD OE1 NE2 REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 ASN C 210 CG OD1 ND2 REMARK 470 ARG C 233 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 274 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 278 CG CD OE1 NE2 REMARK 470 GLN B 3 CG CD OE1 NE2 REMARK 470 MET B 58 CG SD CE REMARK 470 LYS B 64 CG CD CE NZ REMARK 470 GLU B 85 CG CD OE1 OE2 REMARK 470 GLN B 192 CG CD OE1 NE2 REMARK 470 LYS B 201 CG CD CE NZ REMARK 470 ASN B 204 CG OD1 ND2 REMARK 470 LYS B 206 CG CD CE NZ REMARK 470 LYS B 214 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 51 -43.53 72.86 REMARK 500 ALA A 84 170.86 179.77 REMARK 500 VAL B 55 66.15 65.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 412 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH B 545 DISTANCE = 6.30 ANGSTROMS DBREF 6DDM A 1 214 PDB 6DDM 6DDM 1 214 DBREF 6DDM C 204 297 UNP Q96QC4 Q96QC4_HUMAN 204 297 DBREF 6DDM B 1 216 PDB 6DDM 6DDM 1 216 SEQRES 1 A 215 GLU ILE ILE LEU THR GLN SER PRO THR THR MET ALA ALA SEQRES 2 A 215 SER PRO GLY GLU LYS ILE THR ILE THR CYS SER ALA SER SEQRES 3 A 215 SER SER ILE SER SER HIS TYR LEU HIS TRP TYR GLN GLN SEQRES 4 A 215 LYS SER GLY PHE SER PRO LYS LEU LEU ILE TYR ARG THR SEQRES 5 A 215 SER ASN LEU ALA SER GLY VAL PRO ALA ARG PHE SER GLY SEQRES 6 A 215 SER GLY SER GLY THR SER TYR SER LEU THR ILE GLY THR SEQRES 7 A 215 MET GLU ALA GLU ASP VAL ALA THR TYR TYR CYS GLN GLN SEQRES 8 A 215 GLY SER SER LEU PRO LEU THR PHE GLY ALA GLY THR LYS SEQRES 9 A 215 LEU GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 A 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 A 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 A 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 A 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 A 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 A 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 A 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 A 215 SER PHE ASN ARG GLY GLU CYS SEQRES 1 C 94 THR VAL PRO PRO MET VAL ASN VAL THR ARG SER GLU ALA SEQRES 2 C 94 SER GLU GLY ASN ILE THR VAL THR CYS ARG ALA SER SER SEQRES 3 C 94 PHE TYR PRO ARG ASN ILE ILE LEU THR TRP ARG GLN ASP SEQRES 4 C 94 GLY VAL SER LEU SER HIS ASP THR GLN GLN TRP GLY ASP SEQRES 5 C 94 VAL LEU PRO ASP GLY ASN GLY THR TYR GLN THR TRP VAL SEQRES 6 C 94 ALA THR ARG ILE CYS ARG GLY GLU GLU GLN ARG PHE THR SEQRES 7 C 94 CYS TYR MET GLU HIS SER GLY ASN HIS SER THR HIS PRO SEQRES 8 C 94 VAL PRO SER SEQRES 1 B 220 GLU ILE GLN LEU GLN GLN SER GLY PRO GLU LEU VAL LYS SEQRES 2 B 220 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 B 220 TYR ALA PHE THR SER GLN ASN ILE TYR TRP VAL LYS GLN SEQRES 4 B 220 SER HIS GLY LYS SER LEU GLU TRP ILE GLY TYR ILE GLU SEQRES 5 B 220 PRO TYR ASN VAL VAL PRO MET TYR ASN PRO LYS PHE LYS SEQRES 6 B 220 GLY LYS ALA THR LEU THR VAL ASP LYS SER SER SER SER SEQRES 7 B 220 ALA TYR ILE HIS LEU ASN SER LEU THR SER GLU ASP SER SEQRES 8 B 220 ALA ILE TYR TYR CYS ALA ARG SER GLY SER SER ASN PHE SEQRES 9 B 220 ASP TYR TRP GLY GLN GLY THR THR LEU THR VAL SER SER SEQRES 10 B 220 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 11 B 220 SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY SEQRES 12 B 220 CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SEQRES 13 B 220 SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR SEQRES 14 B 220 PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SEQRES 15 B 220 SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR SEQRES 16 B 220 GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN SEQRES 17 B 220 THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS FORMUL 4 HOH *618(H2 O) HELIX 1 AA1 SER A 29 HIS A 31 5 3 HELIX 2 AA2 GLU A 79 VAL A 83 5 5 HELIX 3 AA3 SER A 121 LYS A 126 1 6 HELIX 4 AA4 LYS A 183 LYS A 188 1 6 HELIX 5 AA5 SER C 247 GLN C 251 5 5 HELIX 6 AA6 GLU C 276 GLN C 278 5 3 HELIX 7 AA7 ALA B 28 GLN B 32 5 5 HELIX 8 AA8 PRO B 61 LYS B 64 5 4 HELIX 9 AA9 THR B 83 SER B 87 5 5 HELIX 10 AB1 SER B 156 ALA B 158 5 3 HELIX 11 AB2 SER B 187 LEU B 189 5 3 HELIX 12 AB3 LYS B 201 ASN B 204 5 4 SHEET 1 AA1 3 LEU A 4 SER A 7 0 SHEET 2 AA1 3 ILE A 19 ILE A 28 -1 O SER A 24 N THR A 5 SHEET 3 AA1 3 PHE A 62 ILE A 75 -1 O TYR A 71 N CYS A 23 SHEET 1 AA2 6 THR A 10 ALA A 13 0 SHEET 2 AA2 6 THR A 102 ILE A 106 1 O GLU A 105 N MET A 11 SHEET 3 AA2 6 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 104 SHEET 4 AA2 6 LEU A 33 GLN A 38 -1 N GLN A 38 O THR A 85 SHEET 5 AA2 6 LYS A 45 TYR A 49 -1 O ILE A 48 N TRP A 35 SHEET 6 AA2 6 ASN A 53 LEU A 54 -1 O ASN A 53 N TYR A 49 SHEET 1 AA3 4 THR A 10 ALA A 13 0 SHEET 2 AA3 4 THR A 102 ILE A 106 1 O GLU A 105 N MET A 11 SHEET 3 AA3 4 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 104 SHEET 4 AA3 4 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 AA4 4 SER A 114 PHE A 118 0 SHEET 2 AA4 4 THR A 129 PHE A 139 -1 O LEU A 135 N PHE A 116 SHEET 3 AA4 4 TYR A 173 SER A 182 -1 O LEU A 175 N LEU A 136 SHEET 4 AA4 4 SER A 159 VAL A 163 -1 N GLN A 160 O THR A 178 SHEET 1 AA5 4 ALA A 153 LEU A 154 0 SHEET 2 AA5 4 LYS A 145 VAL A 150 -1 N VAL A 150 O ALA A 153 SHEET 3 AA5 4 VAL A 191 THR A 197 -1 O GLU A 195 N GLN A 147 SHEET 4 AA5 4 VAL A 205 ASN A 210 -1 O VAL A 205 N VAL A 196 SHEET 1 AA6 4 MET C 208 ARG C 213 0 SHEET 2 AA6 4 THR C 222 PHE C 230 -1 O ARG C 226 N ASN C 210 SHEET 3 AA6 4 TYR C 264 ARG C 271 -1 O VAL C 268 N CYS C 225 SHEET 4 AA6 4 GLN C 252 TRP C 253 -1 N GLN C 252 O ALA C 269 SHEET 1 AA7 4 MET C 208 ARG C 213 0 SHEET 2 AA7 4 THR C 222 PHE C 230 -1 O ARG C 226 N ASN C 210 SHEET 3 AA7 4 TYR C 264 ARG C 271 -1 O VAL C 268 N CYS C 225 SHEET 4 AA7 4 LEU C 257 PRO C 258 -1 N LEU C 257 O GLN C 265 SHEET 1 AA8 4 VAL C 244 SER C 245 0 SHEET 2 AA8 4 ILE C 236 GLN C 241 -1 N GLN C 241 O VAL C 244 SHEET 3 AA8 4 PHE C 280 HIS C 286 -1 O TYR C 283 N THR C 238 SHEET 4 AA8 4 ASN C 289 PRO C 294 -1 O HIS C 293 N CYS C 282 SHEET 1 AA9 4 GLN B 3 GLN B 6 0 SHEET 2 AA9 4 VAL B 18 SER B 25 -1 O LYS B 23 N GLN B 5 SHEET 3 AA9 4 SER B 77 LEU B 82 -1 O LEU B 82 N VAL B 18 SHEET 4 AA9 4 ALA B 67 ASP B 72 -1 N THR B 70 O TYR B 79 SHEET 1 AB1 6 GLU B 10 VAL B 12 0 SHEET 2 AB1 6 THR B 107 VAL B 111 1 O THR B 110 N GLU B 10 SHEET 3 AB1 6 ALA B 88 ARG B 94 -1 N ALA B 88 O LEU B 109 SHEET 4 AB1 6 ILE B 34 GLN B 39 -1 N TYR B 35 O ALA B 93 SHEET 5 AB1 6 LEU B 45 GLU B 52 -1 O GLU B 46 N LYS B 38 SHEET 6 AB1 6 VAL B 56 TYR B 59 -1 O MET B 58 N TYR B 50 SHEET 1 AB2 4 GLU B 10 VAL B 12 0 SHEET 2 AB2 4 THR B 107 VAL B 111 1 O THR B 110 N GLU B 10 SHEET 3 AB2 4 ALA B 88 ARG B 94 -1 N ALA B 88 O LEU B 109 SHEET 4 AB2 4 TYR B 102 TRP B 103 -1 O TYR B 102 N ARG B 94 SHEET 1 AB3 4 SER B 120 LEU B 124 0 SHEET 2 AB3 4 THR B 135 TYR B 145 -1 O LEU B 141 N PHE B 122 SHEET 3 AB3 4 TYR B 176 PRO B 185 -1 O LEU B 178 N VAL B 142 SHEET 4 AB3 4 VAL B 163 THR B 165 -1 N HIS B 164 O VAL B 181 SHEET 1 AB4 4 SER B 120 LEU B 124 0 SHEET 2 AB4 4 THR B 135 TYR B 145 -1 O LEU B 141 N PHE B 122 SHEET 3 AB4 4 TYR B 176 PRO B 185 -1 O LEU B 178 N VAL B 142 SHEET 4 AB4 4 VAL B 169 LEU B 170 -1 N VAL B 169 O SER B 177 SHEET 1 AB5 3 THR B 151 TRP B 154 0 SHEET 2 AB5 3 ILE B 195 HIS B 200 -1 O ASN B 197 N SER B 153 SHEET 3 AB5 3 THR B 205 LYS B 210 -1 O VAL B 207 N VAL B 198 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.08 SSBOND 2 CYS A 134 CYS A 194 1555 1555 2.04 SSBOND 3 CYS A 214 CYS B 216 1555 1555 2.05 SSBOND 4 CYS C 225 CYS C 282 1555 1555 2.05 SSBOND 5 CYS B 22 CYS B 92 1555 1555 2.02 SSBOND 6 CYS B 140 CYS B 196 1555 1555 2.02 CISPEP 1 SER A 7 PRO A 8 0 -5.29 CISPEP 2 SER A 7 PRO A 8 0 -7.84 CISPEP 3 LEU A 94 PRO A 95 0 -0.65 CISPEP 4 TYR A 140 PRO A 141 0 1.93 CISPEP 5 TYR C 231 PRO C 232 0 2.40 CISPEP 6 PHE B 146 PRO B 147 0 -7.14 CISPEP 7 GLU B 148 PRO B 149 0 2.09 CRYST1 58.690 50.177 88.633 90.00 90.85 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017039 0.000000 0.000252 0.00000 SCALE2 0.000000 0.019929 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011284 0.00000