HEADER IMMUNE SYSTEM 10-MAY-18 6DDV TITLE CRYSTAL STRUCTURE ANALYSIS OF THE EPITOPE OF AN ANTI-MICA ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-MICA FAB FRAGMENT HEAVY CHAIN CLONE 6E1; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MHC CLASS I CHAIN-RELATED PROTEIN A; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: ANTI-MICA FAB FRAGMENT LIGHT CHAIN CLONE 6E1; COMPND 12 CHAIN: A; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 STRAIN: BALB/C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: 64B4; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBR322; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: MICA; SOURCE 15 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PACGP67; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 21 ORGANISM_TAXID: 10090; SOURCE 22 STRAIN: BALB/C; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 25 EXPRESSION_SYSTEM_STRAIN: 64B4; SOURCE 26 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 27 EXPRESSION_SYSTEM_PLASMID: PBR322 KEYWDS FAB FRAGMENT-ANTIGEN COMPLEX, IMMUNOGLOBULIN DOMAIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.L.MATSUMOTO REVDAT 4 11-OCT-23 6DDV 1 REMARK REVDAT 3 23-JAN-19 6DDV 1 JRNL REVDAT 2 05-DEC-18 6DDV 1 JRNL REVDAT 1 24-OCT-18 6DDV 0 JRNL AUTH T.N.LOMBANA,M.L.MATSUMOTO,A.M.BERKLEY,E.TOY,R.COOK,Y.GAN, JRNL AUTH 2 C.DU,P.SCHNIER,W.SANDOVAL,Z.YE,J.M.SCHARTNER,J.KIM,C.SPIESS JRNL TITL HIGH-RESOLUTION GLYCOSYLATION SITE-ENGINEERING METHOD JRNL TITL 2 IDENTIFIES MICA EPITOPE CRITICAL FOR SHEDDING INHIBITION JRNL TITL 3 ACTIVITY OF ANTI-MICA ANTIBODIES. JRNL REF MABS V. 11 75 2019 JRNL REFN ESSN 1942-0870 JRNL PMID 30307368 JRNL DOI 10.1080/19420862.2018.1532767 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 75.9 REMARK 3 NUMBER OF REFLECTIONS : 24785 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1353 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 476 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 19.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.4220 REMARK 3 BIN FREE R VALUE SET COUNT : 24 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4026 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 61 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.05000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : -2.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.358 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.256 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.237 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.247 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4153 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3714 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5667 ; 1.128 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8581 ; 0.836 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 534 ; 6.362 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;33.443 ;24.233 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 624 ;13.314 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;11.608 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 636 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4740 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 950 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 214 REMARK 3 ORIGIN FOR THE GROUP (A): 2.3030 12.6573 47.8304 REMARK 3 T TENSOR REMARK 3 T11: 0.1517 T22: 0.0875 REMARK 3 T33: 0.0153 T12: -0.0138 REMARK 3 T13: 0.0102 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.4274 L22: 0.3893 REMARK 3 L33: 1.9069 L12: -0.3779 REMARK 3 L13: 1.2423 L23: -0.2702 REMARK 3 S TENSOR REMARK 3 S11: -0.0721 S12: -0.0530 S13: 0.0602 REMARK 3 S21: -0.0200 S22: 0.0007 S23: -0.0703 REMARK 3 S31: -0.1685 S32: -0.0044 S33: 0.0715 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 204 C 297 REMARK 3 ORIGIN FOR THE GROUP (A): -8.8537 13.4335 7.4635 REMARK 3 T TENSOR REMARK 3 T11: 0.2281 T22: 0.0885 REMARK 3 T33: 0.0081 T12: 0.0155 REMARK 3 T13: -0.0212 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 2.2884 L22: 0.9834 REMARK 3 L33: 2.6518 L12: -0.6133 REMARK 3 L13: 0.0620 L23: 0.5605 REMARK 3 S TENSOR REMARK 3 S11: -0.1455 S12: 0.0436 S13: 0.0852 REMARK 3 S21: -0.0525 S22: 0.0448 S23: -0.0225 REMARK 3 S31: -0.2191 S32: -0.0550 S33: 0.1007 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): -0.8210 -4.8276 50.2054 REMARK 3 T TENSOR REMARK 3 T11: 0.1395 T22: 0.1230 REMARK 3 T33: 0.0072 T12: 0.0098 REMARK 3 T13: 0.0114 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.0601 L22: 0.5041 REMARK 3 L33: 1.7841 L12: -0.0191 REMARK 3 L13: 0.9086 L23: -0.2478 REMARK 3 S TENSOR REMARK 3 S11: 0.1169 S12: -0.0463 S13: -0.0517 REMARK 3 S21: 0.0689 S22: -0.0632 S23: 0.0282 REMARK 3 S31: 0.2337 S32: 0.0374 S33: -0.0537 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6DDV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234449. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26155 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 76.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 18.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.20 REMARK 200 R MERGE FOR SHELL (I) : 0.31600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 4J8R, 1F3D, 1NZ8, 6DDM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRI-SODIUM CITRATE, 15% REMARK 280 ISOPROPANOL, 15% PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.25250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.86100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.88800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.86100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.25250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.88800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN B 1 REMARK 465 SER B 215 REMARK 465 CYS B 216 REMARK 465 ASP B 217 REMARK 465 GLU A 213 REMARK 465 CYS A 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 5 CG CD OE1 NE2 REMARK 470 LYS B 13 CG CD CE NZ REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 ARG B 105 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 214 CG CD CE NZ REMARK 470 ARG C 213 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 249 CG OD1 OD2 REMARK 470 GLN C 252 CG CD OE1 NE2 REMARK 470 ARG C 274 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 278 CG CD OE1 NE2 REMARK 470 ASN C 289 CG OD1 ND2 REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 ARG A 77 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 ASN A 152 CG OD1 ND2 REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 LYS A 190 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 28 96.31 -68.01 REMARK 500 SER B 130 53.30 -116.46 REMARK 500 ASP B 144 63.23 62.15 REMARK 500 HIS C 286 117.78 -162.26 REMARK 500 LYS A 50 59.41 34.36 REMARK 500 VAL A 51 -56.10 76.26 REMARK 500 ASN A 138 71.73 58.76 REMARK 500 ASN A 152 15.22 58.49 REMARK 500 REMARK 500 REMARK: NULL DBREF 6DDV B 1 217 PDB 6DDV 6DDV 1 217 DBREF 6DDV C 204 297 UNP H9CTV0 H9CTV0_HUMAN 204 297 DBREF 6DDV A 1 214 PDB 6DDV 6DDV 1 214 SEQADV 6DDV SER C 273 UNP H9CTV0 CYS 273 ENGINEERED MUTATION SEQRES 1 B 226 GLN GLY GLN MET GLN GLN SER GLY ALA GLU LEU VAL LYS SEQRES 2 B 226 PRO GLY ALA SER VAL LYS LEU SER CYS LYS THR SER GLY SEQRES 3 B 226 PHE THR PHE SER ASP ASN TYR ILE SER TRP LEU LYS GLN SEQRES 4 B 226 LYS PRO GLY GLN SER LEU GLU TRP ILE ALA TRP ILE TYR SEQRES 5 B 226 ALA GLY THR GLY GLY SER SER TYR ASN GLN LYS PHE ARG SEQRES 6 B 226 ASP LYS ALA GLN LEU THR VAL ASP THR SER SER ARG THR SEQRES 7 B 226 ALA TYR MET GLN LEU SER SER LEU THR THR GLU ASP SER SEQRES 8 B 226 ALA ILE TYR TYR CYS ALA ARG HIS ASP TYR TYR GLY THR SEQRES 9 B 226 SER GLY ALA TRP PHE ALA TYR TRP GLY ARG GLY THR LEU SEQRES 10 B 226 VAL THR VAL SER ALA ALA SER THR LYS GLY PRO SER VAL SEQRES 11 B 226 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 B 226 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 B 226 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 B 226 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 B 226 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 B 226 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 B 226 HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU SEQRES 18 B 226 PRO LYS SER CYS ASP SEQRES 1 C 94 THR VAL PRO PRO MET VAL ASN VAL THR ARG SER GLU ALA SEQRES 2 C 94 SER GLU GLY ASN ILE THR VAL THR CYS ARG ALA SER SER SEQRES 3 C 94 PHE TYR PRO ARG ASN ILE ILE LEU THR TRP ARG GLN ASP SEQRES 4 C 94 GLY VAL SER LEU SER HIS ASP THR GLN GLN TRP GLY ASP SEQRES 5 C 94 VAL LEU PRO ASP GLY ASN GLY THR TYR GLN THR TRP VAL SEQRES 6 C 94 ALA THR ARG ILE SER ARG GLY GLU GLU GLN ARG PHE THR SEQRES 7 C 94 CYS TYR MET GLU HIS SER GLY ASN HIS SER THR HIS PRO SEQRES 8 C 94 VAL PRO SER SEQRES 1 A 219 ASP VAL LEU MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 A 219 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 A 219 GLN HIS ILE VAL HIS SER ASN GLU ASN THR TYR LEU GLU SEQRES 4 A 219 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 A 219 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 A 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 A 219 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 A 219 TYR CYS PHE GLN GLY SER HIS VAL PRO TRP THR PHE GLY SEQRES 9 A 219 GLY GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 A 219 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 A 219 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 A 219 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 A 219 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 A 219 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 A 219 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 A 219 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 A 219 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS FORMUL 4 HOH *61(H2 O) HELIX 1 AA1 THR B 28 SER B 30 5 3 HELIX 2 AA2 GLN B 61 ARG B 64 5 4 HELIX 3 AA3 THR B 83 SER B 87 5 5 HELIX 4 AA4 SER B 127 LYS B 129 5 3 HELIX 5 AA5 SER B 156 ALA B 158 5 3 HELIX 6 AA6 SER B 187 GLY B 190 5 4 HELIX 7 AA7 LYS B 201 ASN B 204 5 4 HELIX 8 AA8 SER C 247 GLN C 251 5 5 HELIX 9 AA9 GLU C 276 GLN C 278 5 3 HELIX 10 AB1 GLU A 79 LEU A 83 5 5 HELIX 11 AB2 SER A 121 SER A 127 1 7 HELIX 12 AB3 LYS A 183 LYS A 188 1 6 SHEET 1 AA1 4 GLN B 3 GLN B 6 0 SHEET 2 AA1 4 VAL B 18 SER B 25 -1 O LYS B 23 N GLN B 5 SHEET 3 AA1 4 THR B 77 LEU B 82 -1 O MET B 80 N LEU B 20 SHEET 4 AA1 4 ALA B 67 ASP B 72 -1 N ASP B 72 O THR B 77 SHEET 1 AA2 6 GLU B 10 VAL B 12 0 SHEET 2 AA2 6 THR B 107 VAL B 111 1 O THR B 110 N GLU B 10 SHEET 3 AA2 6 ALA B 88 ASP B 96 -1 N ALA B 88 O VAL B 109 SHEET 4 AA2 6 ASN B 32 GLN B 39 -1 N GLN B 39 O ILE B 89 SHEET 5 AA2 6 LEU B 45 TYR B 52 -1 O ILE B 51 N ILE B 34 SHEET 6 AA2 6 SER B 57 TYR B 59 -1 O SER B 58 N TRP B 50 SHEET 1 AA3 4 GLU B 10 VAL B 12 0 SHEET 2 AA3 4 THR B 107 VAL B 111 1 O THR B 110 N GLU B 10 SHEET 3 AA3 4 ALA B 88 ASP B 96 -1 N ALA B 88 O VAL B 109 SHEET 4 AA3 4 TYR B 102 TRP B 103 -1 O TYR B 102 N ARG B 94 SHEET 1 AA4 4 SER B 120 LEU B 124 0 SHEET 2 AA4 4 THR B 135 TYR B 145 -1 O LYS B 143 N SER B 120 SHEET 3 AA4 4 TYR B 176 PRO B 185 -1 O TYR B 176 N TYR B 145 SHEET 4 AA4 4 VAL B 163 THR B 165 -1 N HIS B 164 O VAL B 181 SHEET 1 AA5 4 THR B 131 SER B 132 0 SHEET 2 AA5 4 THR B 135 TYR B 145 -1 O THR B 135 N SER B 132 SHEET 3 AA5 4 TYR B 176 PRO B 185 -1 O TYR B 176 N TYR B 145 SHEET 4 AA5 4 VAL B 169 LEU B 170 -1 N VAL B 169 O SER B 177 SHEET 1 AA6 3 THR B 151 TRP B 154 0 SHEET 2 AA6 3 ILE B 195 HIS B 200 -1 O ASN B 197 N SER B 153 SHEET 3 AA6 3 THR B 205 LYS B 210 -1 O VAL B 207 N VAL B 198 SHEET 1 AA7 4 MET C 208 SER C 217 0 SHEET 2 AA7 4 ASN C 220 PHE C 230 -1 O THR C 222 N SER C 214 SHEET 3 AA7 4 TYR C 264 SER C 273 -1 O THR C 266 N ALA C 227 SHEET 4 AA7 4 GLN C 252 PRO C 258 -1 N GLY C 254 O TRP C 267 SHEET 1 AA8 4 VAL C 244 SER C 245 0 SHEET 2 AA8 4 ILE C 236 GLN C 241 -1 N GLN C 241 O VAL C 244 SHEET 3 AA8 4 PHE C 280 HIS C 286 -1 O TYR C 283 N THR C 238 SHEET 4 AA8 4 ASN C 289 PRO C 294 -1 O SER C 291 N MET C 284 SHEET 1 AA9 4 MET A 4 THR A 7 0 SHEET 2 AA9 4 ALA A 19 SER A 25 -1 O ARG A 24 N THR A 5 SHEET 3 AA9 4 ASP A 70 ILE A 75 -1 O ILE A 75 N ALA A 19 SHEET 4 AA9 4 PHE A 62 SER A 67 -1 N SER A 63 O LYS A 74 SHEET 1 AB1 6 SER A 10 VAL A 13 0 SHEET 2 AB1 6 THR A 102 ILE A 106 1 O LYS A 103 N LEU A 11 SHEET 3 AB1 6 GLY A 84 GLN A 90 -1 N GLY A 84 O LEU A 104 SHEET 4 AB1 6 LEU A 33 GLN A 38 -1 N GLN A 38 O VAL A 85 SHEET 5 AB1 6 LYS A 45 TYR A 49 -1 O LYS A 45 N LEU A 37 SHEET 6 AB1 6 ASN A 53 ARG A 54 -1 O ASN A 53 N TYR A 49 SHEET 1 AB2 4 SER A 10 VAL A 13 0 SHEET 2 AB2 4 THR A 102 ILE A 106 1 O LYS A 103 N LEU A 11 SHEET 3 AB2 4 GLY A 84 GLN A 90 -1 N GLY A 84 O LEU A 104 SHEET 4 AB2 4 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 AB3 4 SER A 114 PHE A 118 0 SHEET 2 AB3 4 THR A 129 PHE A 139 -1 O VAL A 133 N PHE A 118 SHEET 3 AB3 4 TYR A 173 SER A 182 -1 O LEU A 179 N VAL A 132 SHEET 4 AB3 4 SER A 159 VAL A 163 -1 N GLN A 160 O THR A 178 SHEET 1 AB4 4 ALA A 153 LEU A 154 0 SHEET 2 AB4 4 LYS A 145 VAL A 150 -1 N VAL A 150 O ALA A 153 SHEET 3 AB4 4 VAL A 191 THR A 197 -1 O GLU A 195 N GLN A 147 SHEET 4 AB4 4 VAL A 205 ASN A 210 -1 O LYS A 207 N CYS A 194 SSBOND 1 CYS B 22 CYS B 92 1555 1555 2.05 SSBOND 2 CYS B 140 CYS B 196 1555 1555 2.04 SSBOND 3 CYS C 225 CYS C 282 1555 1555 2.05 SSBOND 4 CYS A 23 CYS A 88 1555 1555 2.04 SSBOND 5 CYS A 134 CYS A 194 1555 1555 2.03 CISPEP 1 PHE B 146 PRO B 147 0 -6.38 CISPEP 2 GLU B 148 PRO B 149 0 2.48 CISPEP 3 TYR C 231 PRO C 232 0 0.50 CISPEP 4 THR A 7 PRO A 8 0 -4.05 CISPEP 5 VAL A 94 PRO A 95 0 -6.92 CISPEP 6 TYR A 140 PRO A 141 0 6.28 CRYST1 66.505 89.776 89.722 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015036 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011139 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011146 0.00000